Rh6CG514600

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
67279488 .. 67280187
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG514600.1

Sequence Viewer

Length: 270 bp
ATGAAGGGTTGTGTTTTTGGTAGTTGTCCTCATCTTGAGTCACTTGATTTGCGACAGTGTTTGAATCTGACATTGGAGGGAAATCTGGGTAGAAGTTGCGTCGAACGAATTCAAAAGGTAAGGCTTCCCTTGGATTCCATCGAGGACATAGACCCATCATATAATATGAATGGAGCTCTGGTCACTGAAGGCATCTTGGATTCCATGTCTGCTGGTATTCTGGTCTACATGCATGGCCTTGGTGGACCTAATTGGCTGCTGACTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

4.85

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 207
AgsI TTSAA 2 cut(s) 64, 113
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 178
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 146, 163
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmsI GCATC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 129, 238
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
BseDI CCNNGG 2 cut(s) 129, 238
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 178
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 178
BspANI GGCC 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 129, 238
BssT1I CCWWGG 2 cut(s) 129, 238
Bst4CI ACNGT 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 62, 183
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 88
CviAII CATG 3 cut(s) 205, 229, 233
CviJI RGCY 4 cut(s) 124, 176, 237, 256
CviKI_1 RGCY 4 cut(s) 124, 176, 237, 256
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 129, 238
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 129, 238
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 129, 238
FaeI CATG 3 cut(s) 208, 232, 236
FaiI YATR 7 cut(s) 149, 160, 162, 167, 206, 230, 234
FatI CATG 3 cut(s) 204, 228, 232
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 208, 232, 236
HinfI GANTC 4 cut(s) 38, 64, 134, 200
Hpy166II GTNNAC 2 cut(s) 226, 245
Hpy188I TCNGA 2 cut(s) 69, 269
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 2 cut(s) 226, 245
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 232
Hsp92II CATG 3 cut(s) 208, 232, 236
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 71, 164, 198, 206
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 39, 181
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 108, 250
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 39, 70, 136
Mph1103I ATGCAT 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 108
NlaIII CATG 3 cut(s) 208, 232, 236
NmuCI GTSAC 2 cut(s) 39, 181
NsiI ATGCAT 1 cut(s) 234
NspI RCATGY 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 64, 134, 200
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 178
SatI GCNGC 1 cut(s) 257
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 120, 178, 250
SfaNI GCATC 1 cut(s) 201
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 2 cut(s) 108, 250
SstI GAGCTC 1 cut(s) 178
StyI CCWWGG 2 cut(s) 129, 238
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 102, 141
TasI AATT 2 cut(s) 108, 250
TfiI GAWTC 3 cut(s) 64, 134, 200
TscAI CASTG 2 cut(s) 62, 190
TseFI GTSAC 2 cut(s) 39, 181
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 2 cut(s) 39, 181
TspDTI ATGAA 2 cut(s) 17, 182
TspRI CASTG 2 cut(s) 62, 190
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.