Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000658.1

Orthogroup ID

OG0000586

Physical Location & Seq

Genomic Coordinates Reverse (-)

36272 .. 39110

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000658.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgtggagcaagattgacatgcgaaacgatggtgagattaactatgacttggaggagatgtgccgccacgccgttgatctgagtcccggtaatcttgttgatattaacatcgagtatttcggcaccgatgagctgcttgaatacatcactgaaagtaatcattatcaacgtattcttaaagcttactggaaaagaaatcaagtaacttttcatgggattttagattacgatgcagaggcacttgctatagcaggaaccatgcatggtttacgacacctccagttttctgggaataagttgacagatgatggcttgagaagtattcttgattgttgtcctgatcttggctcacttgatctgcgccattgtttcattcttaatatggagggagatttgagaagaatatgtgatgaacgaattgagaaattgtggcttccccatgattccactgagggcaaagaatttgttgctagatctgaagcttattgctttaaatggacagaactcccagacgatgttacagcattgatactgtcacagctgggagggattgacatcctcacctccgctcagaagatggtcgatatcaatgttgagagctttggaaccaatgagctccttaaatatcatatcgctgagagttctactggactcaaacgcctcaggttagtgacttcttttagaataacagatgaaggattttgtgaagtggcttcaaaatttccgctgttggaggaccttgacctttcaatacatgaggatatctcacatgaaactctagcattggttggacgctcatgccctcttctgaaatcattgaaatttaacaaaaggtggtttgatgaaggccgatataataaccggtacaagcttgagcggaatgactgtgcacttgctatagcagggacgatgcatggtttacaccacctcatgctttttaggaatacactgactaataaaggtttgtgtgccattcttgatggttgtcctcatcttgagtcgctagatatgtgccagtgttttaatcttagattggggggaaaggtgggaagaagttgcgctgaacaaattaaagaactgcggcttccccatgaatctgtcgatgacattgacccatcatatcaatttgtctttgatcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

380

Amino Acids

43.5

Weight (kDa)

5.16

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52480 AT5G52480
fragaria_vesca	FvH4_2g31840 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09561 FvH4_3g09610 FvH4_3g09610 FvH4_3g09620 FvH4_3g38210 FvH4_3g38220 FvH4_3g38230 FvH4_3g38230
malus_domestica	MD05G1276400.v1.1
pyrus_communis	pycom05g25740
rosa_chinensis	RchiOBHm_Chr5g0015221 RchiOBHm_Chr5g0015271 RchiOBHm_Chr5g0015281 RchiOBHm_Chr5g0015311 RchiOBHm_Chr6g0310961 RchiOBHm_Chr6g0310971
rosa_laevigata	RLG00000010445 RLG00000032177 RLG00000032184 RLG00000032187 RLG00000032191
rosa_multiflora	Rmu_co8003450.1_g000001 Rmu_co8369503.1_g000001 Rmu_sc0000658.1_g000011 Rmu_sc0002209.1_g000022 Rmu_sc0012235.1_g000015
rosa_roxburghii	Rroxscaffold_1G00061150 Rroxscaffold_1G00061160 Rroxscaffold_1G00061190 Rroxscaffold_1G00061220 Rroxscaffold_1G00061350 Rroxscaffold_7G00158130 Rroxscaffold_7G00158140
rosa_rugosa	Rorug05G0024700 Rorug05G0025500 Rorug05G0025700 Rorug05G0025800 Rorug05G0025900 Rorug05G0026300 Rorug05G0026400 Rorug05G0026600.1 Rorug06G0384500 Rorug06G0384600 Rorug06G0384700
rosa_samantha	Rh5BG117300 Rh5BG117900 Rh5BG118100 Rh5BG118500 Rh5BG118700 Rh5BG118800 Rh5BG118900 Rh5CG128400 Rh5CG129000 Rh5CG129200 Rh5CG129400 Rh5DG116400 Rh5DG117200 Rh5DG117500 Rh5DG117700 Rh5DG117800 Rh6AG498200 Rh6AG498300 Rh6CG514500 Rh6CG514600 Rh6CG514700 Rh6DG501000 Rh6DG501100 Rh6DG501200
rosa_wichuraiana	Rw5G010300 Rw5G010330 Rw5G010350 Rw5G010360 Rw6G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	2 cut(s)	569, 877
AciI	CCGC	5 cut(s)	64, 567, 725, 877, 1081
AcsI	RAATTY	3 cut(s)	461, 719, 821
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgeI	ACCGGT	1 cut(s)	861
AgsI	TTSAA	4 cut(s)	140, 717, 750, 820
AluBI	AGCT	7 cut(s)	133, 182, 482, 541, 600, 616, 871
AluI	AGCT	7 cut(s)	133, 182, 482, 541, 600, 616, 871
Alw21I	GWGCWC	2 cut(s)	618, 892
Alw44I	GTGCAC	1 cut(s)	888
AoxI	GGCC	1 cut(s)	847
ApaLI	GTGCAC	1 cut(s)	888
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	3 cut(s)	461, 719, 821
AsiGI	ACCGGT	1 cut(s)	861
AspLEI	GCGC	2 cut(s)	363, 1061
AspS9I	GGNCC	1 cut(s)	736
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	44, 553
AvaII	GGWCC	1 cut(s)	736
AxyI	CCTNAGG	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	618, 892
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	5 cut(s)	23, 302, 571, 974, 1123
BceAI	ACGGC	1 cut(s)	56
BclI	TGATCA	1 cut(s)	1135
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	3 cut(s)	471, 779, 1004
BfmI	CTRYAG	2 cut(s)	246, 897
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	3 cut(s)	64, 134, 1082
BlsI	GCNGC	3 cut(s)	65, 135, 1083
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	3 cut(s)	124, 256, 607
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	220, 900
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	3 cut(s)	334, 893, 1016
BpuMI	CCSGG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	554
BsaWI	WCCGGW	1 cut(s)	861
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	861
Bse1I	ACTGG	4 cut(s)	191, 280, 652, 1015
Bse21I	CCTNAGG	1 cut(s)	662
Bse8I	GATNNNNATC	1 cut(s)	554
BseGI	GGATG	1 cut(s)	555
BseJI	GATNNNNATC	1 cut(s)	554
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	5 cut(s)	71, 441, 584, 627, 676
BseNI	ACTGG	4 cut(s)	191, 280, 652, 1015
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	849
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	861
BsiHKAI	GWGCWC	2 cut(s)	618, 892
BsiSI	CCGG	2 cut(s)	87, 862
BslFI	GGGAC	2 cut(s)	69, 919
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	69, 919
BsnI	GGCC	1 cut(s)	849
Bsp1286I	GDGCHC	2 cut(s)	618, 892
Bsp143I	GATC	5 cut(s)	76, 340, 355, 473, 1135
BspACI	CCGC	5 cut(s)	64, 567, 725, 877, 1081
BspANI	GGCC	1 cut(s)	849
BspCNI	CTCAG	5 cut(s)	72, 442, 583, 628, 675
BspLI	GGNNCC	3 cut(s)	124, 256, 607
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	2 cut(s)	569, 877
BsrFI	RCCGGY	1 cut(s)	861
BsrI	ACTGG	4 cut(s)	191, 280, 652, 1015
BssAI	RCCGGY	1 cut(s)	861
BssMI	GATC	5 cut(s)	76, 340, 355, 473, 1135
Bst4CI	ACNGT	2 cut(s)	534, 887
Bst6I	CTCTTC	1 cut(s)	810
BstDEI	CTNAG	6 cut(s)	80, 450, 570, 636, 662, 1028
BstF5I	GGATG	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	363, 1061
BstKTI	GATC	5 cut(s)	79, 343, 358, 476, 1138
BstMBI	GATC	5 cut(s)	76, 340, 355, 473, 1135
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	246, 897
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	473
Bsu36I	CCTNAGG	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	849
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	4 cut(s)	147, 447, 947, 1022
CfoI	GCGC	2 cut(s)	363, 1061
Cfr10I	RCCGGY	1 cut(s)	861
Cfr13I	GGNCC	1 cut(s)	736
CseI	GACGC	1 cut(s)	801
Csp6I	GTAC	1 cut(s)	865
CspAI	ACCGGT	1 cut(s)	861
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	6 cut(s)	80, 450, 570, 636, 662, 1028
DpnI	GATC	5 cut(s)	78, 342, 357, 475, 1137
DpnII	GATC	5 cut(s)	76, 340, 355, 473, 1135
DraI	TTTAAA	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	810
EarI	CTCTTC	1 cut(s)	810
Ecl136II	GAGCTC	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	618
Eco32I	GATATC	2 cut(s)	586, 763
Eco47I	GGWCC	1 cut(s)	736
Eco53kI	GAGCTC	1 cut(s)	616
Eco57I	CTGAAG	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	616
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRV	GATATC	2 cut(s)	586, 763
EcoT22I	ATGCAT	2 cut(s)	264, 915
EcoT38I	GRGCYC	1 cut(s)	618
FaqI	GGGAC	2 cut(s)	69, 919
FbaI	TGATCA	1 cut(s)	1135
Fnu4HI	GCNGC	3 cut(s)	64, 134, 1082
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	3 cut(s)	64, 134, 1082
FspBI	CTAG	3 cut(s)	471, 779, 1004
GlaI	GCGC	2 cut(s)	362, 1060
GluI	GCNGC	3 cut(s)	64, 134, 1082
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	849
HapII	CCGG	2 cut(s)	87, 862
HgaI	GACGC	1 cut(s)	801
HhaI	GCGC	2 cut(s)	363, 1061
Hin6I	GCGC	2 cut(s)	361, 1059
HinP1I	GCGC	2 cut(s)	361, 1059
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	3 cut(s)	180, 480, 869
HinfI	GANTC	5 cut(s)	82, 443, 651, 998, 1094
HpaII	CCGG	2 cut(s)	87, 862
HphI	GGTGA	2 cut(s)	44, 553
Hpy166II	GTNNAC	4 cut(s)	269, 300, 890, 920
Hpy188I	TCNGA	4 cut(s)	81, 478, 573, 810
Hpy188III	TCNNGA	4 cut(s)	326, 338, 977, 995
Hpy8I	GTNNAC	4 cut(s)	269, 300, 890, 920
HpyAV	CCTTC	2 cut(s)	689, 839
HpyCH4III	ACNGT	2 cut(s)	534, 887
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	233, 262, 890, 913
HpyF3I	CTNAG	6 cut(s)	80, 450, 570, 636, 662, 1028
HpySE526I	ACGT	1 cut(s)	169
HspAI	GCGC	2 cut(s)	361, 1059
Ksp22I	TGATCA	1 cut(s)	1135
Kzo9I	GATC	5 cut(s)	76, 340, 355, 473, 1135
LmnI	GCTCC	2 cut(s)	6, 621
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	2 cut(s)	220, 900
MaeI	CTAG	3 cut(s)	471, 779, 1004
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	4 cut(s)	202, 517, 534, 670
MalI	GATC	5 cut(s)	78, 342, 357, 475, 1137
MbiI	CCGCTC	2 cut(s)	569, 877
MboI	GATC	5 cut(s)	76, 340, 355, 473, 1135
MboII	GAAGA	4 cut(s)	411, 586, 797, 1062
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	618, 892
MluCI	AATT	7 cut(s)	417, 425, 461, 719, 821, 1068, 1124
MlyI	GAGTC	3 cut(s)	91, 645, 1007
MmeI	TCCRAC	2 cut(s)	711, 769
Mph1103I	ATGCAT	2 cut(s)	264, 915
MseI	TTAA	9 cut(s)	39, 105, 177, 378, 492, 621, 825, 1023, 1071
MspA1I	CMGCKG	2 cut(s)	541, 727
MspI	CCGG	2 cut(s)	87, 862
MspR9I	CCNGG	1 cut(s)	87
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	5 cut(s)	76, 340, 355, 473, 1135
NlaIV	GGNNCC	3 cut(s)	124, 256, 607
NmuCI	GTSAC	2 cut(s)	534, 670
NsiI	ATGCAT	2 cut(s)	264, 915
NspI	RCATGY	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	443, 1094
PinAI	ACCGGT	1 cut(s)	861
PkrI	GCNGC	3 cut(s)	65, 135, 1083
PleI	GAGTC	3 cut(s)	90, 645, 1006
PpsI	GAGTC	3 cut(s)	90, 645, 1006
PpuMI	RGGWCCY	1 cut(s)	736
Psp124BI	GAGCTC	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	124, 256, 607
PspPI	GGNCC	1 cut(s)	736
PspPPI	RGGWCCY	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
SacI	GAGCTC	1 cut(s)	618
SaqAI	TTAA	9 cut(s)	39, 105, 177, 378, 492, 621, 825, 1023, 1071
SatI	GCNGC	3 cut(s)	64, 134, 1082
Sau3AI	GATC	5 cut(s)	76, 340, 355, 473, 1135
Sau96I	GGNCC	1 cut(s)	736
SchI	GAGTC	3 cut(s)	91, 645, 1007
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	618, 892
SfaNI	GCATC	2 cut(s)	220, 900
SfcI	CTRYAG	2 cut(s)	246, 897
SinI	GGWCC	1 cut(s)	736
SmlI	CTYRAG	3 cut(s)	313, 872, 995
SmoI	CTYRAG	3 cut(s)	313, 872, 995
Sse9I	AATT	7 cut(s)	417, 425, 461, 719, 821, 1068, 1124
SsiI	CCGC	5 cut(s)	64, 567, 725, 877, 1081
SspMI	CTAG	3 cut(s)	471, 779, 1004
SstI	GAGCTC	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	534, 887
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	111, 582, 1101
TasI	AATT	7 cut(s)	417, 425, 461, 719, 821, 1068, 1124
TauI	GCSGC	2 cut(s)	66, 1084
TfiI	GAWTC	2 cut(s)	443, 1094
Tru1I	TTAA	9 cut(s)	39, 105, 177, 378, 492, 621, 825, 1023, 1071
Tru9I	TTAA	9 cut(s)	39, 105, 177, 378, 492, 621, 825, 1023, 1071
TscAI	CASTG	4 cut(s)	154, 454, 954, 1022
TseFI	GTSAC	2 cut(s)	534, 670
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	2 cut(s)	534, 670
TspDTI	ATGAA	7 cut(s)	200, 361, 426, 708, 786, 858, 1107
TspRI	CASTG	4 cut(s)	154, 454, 954, 1022
VneI	GTGCAC	1 cut(s)	888
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	461, 719, 821
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	3 cut(s)	471, 779, 1004
Zsp2I	ATGCAT	2 cut(s)	264, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.