Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000586

Physical Location & Seq

Genomic Coordinates Reverse (-)

83361457 .. 83362094

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGTCACTCATTCACATCATACATAGTTCTACTGGACCCAAACGCCTCAGGTACGTTAGTGACTTCTTTTAGAATAACAGATGAAGGATTTCGTGAAGTGGCTTCAAAATTTCCGCTGTTGGAGGACCTTGACCTTTCGATACATGAGGATATCTCACATGAAACTCTTGCATTAGTTGGACGCTCATGCCCTCTTCTGAAATCATTGAAATTTAACAAAAGGTGGTTTGATGAAGGCCGATATAACAACCGGTACAAGCTTGAGCGGAATGACTGTGTACTTGCTATAGCAGGGACGAAGCATGGTTTACACCACCTCATGCTTTTTAGGAATACACTGACTAATAAAGGTTTTTGTGCCATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATATGCGCCAGTGTTTTAATCTTAGATTGGGAGGAAAGGTGGGAAGAAGATGTGCTGAGCAAATTAAAGAACTGCAGCTTCCCCATAATTCTGTCGATGACATTGACCCATCATATCAATTTGTCTTTGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

177

Amino Acids

20.24

Weight (kDa)

6.44

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52480 AT5G52480
fragaria_vesca	FvH4_2g31840 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09561 FvH4_3g09610 FvH4_3g09610 FvH4_3g09620 FvH4_3g38210 FvH4_3g38220 FvH4_3g38230 FvH4_3g38230
malus_domestica	MD05G1276400.v1.1
pyrus_communis	pycom05g25740
rosa_chinensis	RchiOBHm_Chr5g0015221 RchiOBHm_Chr5g0015271 RchiOBHm_Chr5g0015281 RchiOBHm_Chr5g0015311 RchiOBHm_Chr6g0310961 RchiOBHm_Chr6g0310971
rosa_laevigata	RLG00000010445 RLG00000032177 RLG00000032184 RLG00000032187 RLG00000032191
rosa_multiflora	Rmu_co8003450.1_g000001 Rmu_co8369503.1_g000001 Rmu_sc0000658.1_g000011 Rmu_sc0002209.1_g000022 Rmu_sc0012235.1_g000015
rosa_roxburghii	Rroxscaffold_1G00061150 Rroxscaffold_1G00061160 Rroxscaffold_1G00061190 Rroxscaffold_1G00061220 Rroxscaffold_1G00061350 Rroxscaffold_7G00158130 Rroxscaffold_7G00158140
rosa_rugosa	Rorug05G0024700 Rorug05G0025500 Rorug05G0025700 Rorug05G0025800 Rorug05G0025900 Rorug05G0026300 Rorug05G0026400 Rorug05G0026600.1 Rorug06G0384500 Rorug06G0384600 Rorug06G0384700
rosa_samantha	Rh5BG117300 Rh5BG117900 Rh5BG118100 Rh5BG118500 Rh5BG118700 Rh5BG118800 Rh5BG118900 Rh5CG128400 Rh5CG129000 Rh5CG129200 Rh5CG129400 Rh5DG116400 Rh5DG117200 Rh5DG117500 Rh5DG117700 Rh5DG117800 Rh6AG498200 Rh6AG498300 Rh6CG514500 Rh6CG514600 Rh6CG514700 Rh6DG501000 Rh6DG501100 Rh6DG501200
rosa_wichuraiana	Rw5G010300 Rw5G010330 Rw5G010350 Rw5G010360 Rw6G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	268
AciI	CCGC	2 cut(s)	116, 268
AcsI	RAATTY	2 cut(s)	110, 212
AfaI	GTAC	3 cut(s)	55, 257, 282
AgeI	ACCGGT	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	108, 211
AluBI	AGCT	2 cut(s)	262, 475
AluI	AGCT	2 cut(s)	262, 475
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	2 cut(s)	110, 212
AsiGI	ACCGGT	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	37, 127
AvaII	GGWCC	2 cut(s)	37, 127
AxyI	CCTNAGG	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	45, 78
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	365, 514
BclI	TGATCA	1 cut(s)	526
BfmI	CTRYAG	2 cut(s)	288, 470
BisI	GCNGC	1 cut(s)	473
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	37, 127
BmgT120I	GGNCC	2 cut(s)	37, 127
BmiI	GGNNCC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	284, 407
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	39, 406
Bse21I	CCTNAGG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	63, 444
BseNI	ACTGG	2 cut(s)	39, 406
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	526
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	116, 268
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	62, 445
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	474
BsrBI	CCGCTC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	39, 406
BssAI	RCCGGY	1 cut(s)	252
BssMI	GATC	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	49, 419, 453
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	1 cut(s)	529
BstMBI	GATC	1 cut(s)	526
BstSFI	CTRYAG	2 cut(s)	288, 470
BstV1I	GCAGC	1 cut(s)	484
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	338, 413
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	37, 127
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	54, 256, 281
CspAI	ACCGGT	1 cut(s)	252
CviAII	CATG	5 cut(s)	146, 161, 189, 305, 322
CviJI	RGCY	4 cut(s)	104, 240, 262, 475
CviKI_1	RGCY	4 cut(s)	104, 240, 262, 475
CviQI	GTAC	3 cut(s)	54, 256, 281
DdeI	CTNAG	3 cut(s)	49, 419, 453
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	37, 127
Eco81I	CCTNAGG	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	154
FaeI	CATG	5 cut(s)	149, 164, 192, 308, 325
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	5 cut(s)	145, 160, 188, 304, 321
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	473
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	5 cut(s)	149, 164, 192, 308, 325
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	4, 389
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	281, 311
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	95, 368, 386
Hpy8I	GTNNAC	2 cut(s)	281, 311
HpyAV	CCTTC	2 cut(s)	80, 230
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	173, 472
HpyF3I	CTNAG	3 cut(s)	49, 419, 453
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	149, 164, 192, 308, 325
HspAI	GCGC	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	526
LpnPI	CCDG	5 cut(s)	20, 36, 266, 279, 419
Lsp1109I	GCAGC	1 cut(s)	484
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	5, 61, 390
MalI	GATC	1 cut(s)	528
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	1 cut(s)	526
MboII	GAAGA	3 cut(s)	188, 453, 456
MluCI	AATT	5 cut(s)	110, 212, 459, 484, 515
MlyI	GAGTC	2 cut(s)	13, 398
MmeI	TCCRAC	2 cut(s)	102, 160
MnlI	CCTC	7 cut(s)	58, 118, 142, 204, 329, 390, 422
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	3 cut(s)	216, 414, 462
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	5 cut(s)	149, 164, 192, 308, 325
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	5, 61, 390
PdmI	GAANNNNTTC	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	2 cut(s)	12, 397
PpsI	GAGTC	2 cut(s)	12, 397
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 127
PspPPI	RGGWCCY	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	474
RsaI	GTAC	3 cut(s)	55, 257, 282
RsaNI	GTAC	3 cut(s)	54, 256, 281
SaqAI	TTAA	3 cut(s)	216, 414, 462
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	2 cut(s)	37, 127
SchI	GAGTC	2 cut(s)	13, 398
SfcI	CTRYAG	2 cut(s)	288, 470
SinI	GGWCC	2 cut(s)	37, 127
SmlI	CTYRAG	2 cut(s)	263, 386
SmoI	CTYRAG	2 cut(s)	263, 386
Sse9I	AATT	5 cut(s)	110, 212, 459, 484, 515
SsiI	CCGC	2 cut(s)	116, 268
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	140, 492
TasI	AATT	5 cut(s)	110, 212, 459, 484, 515
TatI	WGTACW	1 cut(s)	280
Tru1I	TTAA	3 cut(s)	216, 414, 462
Tru9I	TTAA	3 cut(s)	216, 414, 462
TscAI	CASTG	2 cut(s)	345, 413
TseFI	GTSAC	3 cut(s)	5, 61, 390
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	3 cut(s)	5, 61, 390
TspDTI	ATGAA	3 cut(s)	99, 177, 249
TspRI	CASTG	2 cut(s)	345, 413
VpaK11BI	GGWCC	2 cut(s)	37, 127
XapI	RAATTY	2 cut(s)	110, 212
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.