RLG00000032184

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000586
Physical Location & Seq
Forward (+)
11882563 .. 11886041
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032184

Sequence Viewer

Length: 1080 bp
ATGGCTTCGAAACTGTGGTTGTTGGAGGAACTTGACATTTCATTGTGCACTGGTATCTCACATGAAGCTGTAATAATGGTTGGGCGCTCTTGCCCTCTTTTGAAGTCATTCAAATTCAACAAGGAGTGGTGCAGATTCTCTGATGATGAGTCTGACTCTGACTCTGATGAGTATGGGTCTGACTTTGATGATAGTGATGACGATTATTTACATGCTCCCTTTGGTCATGCTCCTGTTAGAAAAGATGACAATGCAGATGCACTTGCTATAGCAGGAACGATGCAAGATTTACACCACCTCCAGCTTTATGGGAATAAGCTTACAAATGATGGCTTGAGAAAAATTCTTGATTGTTGTCCTCATCTTGAGTCACTTGATCTGCGCCTTTGCTTCAATCTCAATATGGGGATAGATTTAGAAACAAGATGTGCTGAACGGATTAAAAGGTTGTGGCTTCCCCATGATTCCATAGAGGGAAAAGAATTTACAGCTAGATCAGATGGGTACTGCTTCAAATTTATTGAACTCCCAGACAATGTTACTATGTCGATACTGTCACGGCTTGGAACAATTGATATCCTGGAGAGTGCTCAGAAGGTATGCATGAAGTGGCGCAAAATCTACAAGGAACTGAAGTGGAACACCATAGACATGTGCAATGATAGTGCTCCCGACATTACCTTCGACTTAGATAAGATGTGCCACCATGTTGTTGATCTTAGTTGTGGTAATTTGGTCCATGTGAATGTTGAGGACTTTATCTCGGATGAGCTCCTAGAGTATATCACTGATAGTTCGAGTGGAATCAGACGCCTGCGACTTGTGTGTTCTTATTACATATCAGATGAGGGATTGATTGAAGTTGCATCAAGACTTCTGCTGTTAGAGGACCTTGACATCTCATTATGCGGAAATTTGTCTCATAAGCCTGTGAAAGTGCTTGGGCACTCTTGCCCTCTTTTGAAATCATTCAAATTGAATAAACAATGGCACAAATATTCAGACAACTTCTTTGAAGAGATTATTGACGATGAAGGTCCTTGGAGTAAAGATGACGATGCACTTGCTATTGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

360

Amino Acids

40.97

Weight (kDa)

4.74

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 909
AcsI RAATTY 5 cut(s) 113, 342, 482, 515, 913
AcuI CTGAAG 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 811
AfaI GTAC 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 651
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 5 cut(s) 68, 304, 319, 491, 772
AluI AGCT 5 cut(s) 68, 304, 319, 491, 772
Alw21I GWGCWC 4 cut(s) 50, 592, 670, 774
Alw26I GTCTC 1 cut(s) 924
Alw44I GTGCAC 1 cut(s) 46
ApaLI GTGCAC 1 cut(s) 46
ApoI RAATTY 5 cut(s) 113, 342, 482, 515, 913
ArsI GACNNNNNNTTYG 4 cut(s) 665, 697, 995, 1027
Asp700I GAANNNNTTC 2 cut(s) 107, 968
AspLEI GCGC 3 cut(s) 87, 384, 615
AspS9I GGNCC 3 cut(s) 736, 889, 1037
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 3 cut(s) 736, 889, 1037
BaeGI GKGCMC 2 cut(s) 50, 948
BanII GRGCYC 1 cut(s) 774
Bbv12I GWGCWC 4 cut(s) 50, 592, 670, 774
BccI CCATC 2 cut(s) 323, 494
BceAI ACGGC 1 cut(s) 575
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 1 cut(s) 581
BcoDI GTCTC 1 cut(s) 924
BfaI CTAG 2 cut(s) 492, 776
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 581
Bme18I GGWCC 3 cut(s) 736, 889, 1037
BmgT120I GGNCC 3 cut(s) 736, 889, 1037
BmrFI CCNGG 1 cut(s) 581
BmsI GCATC 4 cut(s) 247, 270, 875, 1048
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 2 cut(s) 284, 602
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 2 cut(s) 355, 386
BsaHI GRCGYC 1 cut(s) 811
BsaJI CCNNGG 1 cut(s) 1040
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bse1I ACTGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 1040
BseGI GGATG 1 cut(s) 772
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 1 cut(s) 55
BseSI GKGCMC 2 cut(s) 50, 948
BsgI GTGCAG 1 cut(s) 151
BsiHKAI GWGCWC 4 cut(s) 50, 592, 670, 774
BsmAI GTCTC 1 cut(s) 924
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 5 cut(s) 50, 592, 670, 774, 948
Bsp143I GATC 3 cut(s) 376, 494, 715
BspACI CCGC 1 cut(s) 909
BspCNI CTCAG 1 cut(s) 604
BspT104I TTCGAA 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 1040
BssMI GATC 3 cut(s) 376, 494, 715
BssNI GRCGYC 1 cut(s) 811
BssT1I CCWWGG 1 cut(s) 1040
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 2 cut(s) 15, 555
Bst6I CTCTTC 1 cut(s) 1011
BstACI GRCGYC 1 cut(s) 811
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 3 cut(s) 591, 688, 719
BstF5I GGATG 1 cut(s) 772
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 3 cut(s) 87, 384, 615
BstKTI GATC 3 cut(s) 379, 497, 718
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 3 cut(s) 376, 494, 715
BstNI CCWGG 1 cut(s) 581
BstNSI RCATGY 2 cut(s) 215, 655
BstSCI CCNGG 1 cut(s) 579
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 2 cut(s) 50, 948
BstXI CCANNNNNNTGG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 772
BtsIMutI CAGTG 2 cut(s) 48, 786
Cac8I GCNNGC 1 cut(s) 815
CfoI GCGC 3 cut(s) 87, 384, 615
Cfr13I GGNCC 3 cut(s) 736, 889, 1037
CseI GACGC 1 cut(s) 819
Csp6I GTAC 1 cut(s) 505
CviAII CATG 8 cut(s) 62, 212, 227, 461, 604, 652, 707, 740
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 3 cut(s) 591, 688, 719
DpnI GATC 3 cut(s) 378, 496, 717
DpnII GATC 3 cut(s) 376, 494, 715
Eam1104I CTCTTC 1 cut(s) 1011
EarI CTCTTC 1 cut(s) 1011
Ecl136II GAGCTC 1 cut(s) 772
Eco130I CCWWGG 1 cut(s) 1040
Eco24I GRGCYC 1 cut(s) 774
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 3 cut(s) 736, 889, 1037
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 772
EcoO109I RGGNCCY 2 cut(s) 889, 1037
EcoRII CCWGG 1 cut(s) 579
EcoRV GATATC 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 1040
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 1040
FaeI CATG 8 cut(s) 65, 215, 230, 464, 607, 655, 710, 743
FatI CATG 8 cut(s) 61, 211, 226, 460, 603, 651, 706, 739
FokI GGATG 1 cut(s) 779
FriOI GRGCYC 1 cut(s) 774
FspBI CTAG 2 cut(s) 492, 776
GlaI GCGC 3 cut(s) 86, 383, 614
GsuI CTGGAG 2 cut(s) 284, 602
HaeII RGCGCY 1 cut(s) 88
HgaI GACGC 1 cut(s) 819
HhaI GCGC 3 cut(s) 87, 384, 615
Hin1I GRCGYC 1 cut(s) 811
Hin1II CATG 8 cut(s) 65, 215, 230, 464, 607, 655, 710, 743
Hin6I GCGC 3 cut(s) 85, 382, 613
HinP1I GCGC 3 cut(s) 85, 382, 613
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 7 cut(s) 135, 149, 155, 161, 368, 464, 804
Hpy166II GTNNAC 1 cut(s) 48
Hpy188III TCNNGA 4 cut(s) 347, 365, 671, 870
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 589, 691, 1028
HpyCH4III ACNGT 2 cut(s) 15, 555
HpyF3I CTNAG 3 cut(s) 591, 688, 719
Hsp92I GRCGYC 1 cut(s) 811
Hsp92II CATG 8 cut(s) 65, 215, 230, 464, 607, 655, 710, 743
HspAI GCGC 3 cut(s) 85, 382, 613
Kzo9I GATC 3 cut(s) 376, 494, 715
LmnI GCTCC 4 cut(s) 220, 235, 673, 777
LpnPI CCDG 9 cut(s) 36, 246, 258, 314, 543, 566, 593, 827, 942
LweI GCATC 4 cut(s) 247, 270, 875, 1048
MaeI CTAG 2 cut(s) 492, 776
MaeIII GTNAC 3 cut(s) 369, 538, 555
MalI GATC 3 cut(s) 378, 496, 717
MboI GATC 3 cut(s) 376, 494, 715
MboII GAAGA 1 cut(s) 1028
MfeI CAATTG 1 cut(s) 570
MhlI GDGCHC 5 cut(s) 50, 592, 670, 774, 948
MluCI AATT 8 cut(s) 113, 342, 482, 515, 570, 730, 913, 974
MlyI GAGTC 4 cut(s) 149, 155, 158, 377
MnlI CCTC 9 cut(s) 19, 105, 308, 369, 466, 745, 841, 880, 966
Mph1103I ATGCAT 1 cut(s) 605
MroXI GAANNNNTTC 2 cut(s) 107, 968
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 2 cut(s) 650, 744
MspR9I CCNGG 1 cut(s) 581
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 581
NdeII GATC 3 cut(s) 376, 494, 715
NlaIII CATG 8 cut(s) 65, 215, 230, 464, 607, 655, 710, 743
NmuCI GTSAC 2 cut(s) 369, 555
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 2 cut(s) 215, 655
NspV TTCGAA 1 cut(s) 8
PciI ACATGT 1 cut(s) 651
PdmI GAANNNNTTC 2 cut(s) 107, 968
PfeI GAWTC 3 cut(s) 135, 464, 804
PfoI TCCNGGA 1 cut(s) 579
PleI GAGTC 4 cut(s) 149, 155, 157, 376
PpsI GAGTC 4 cut(s) 149, 155, 157, 376
PpuMI RGGWCCY 2 cut(s) 889, 1037
PscI ACATGT 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 774
Psp5II RGGWCCY 2 cut(s) 889, 1037
Psp6I CCWGG 1 cut(s) 579
PspGI CCWGG 1 cut(s) 579
PspPI GGNCC 3 cut(s) 736, 889, 1037
PspPPI RGGWCCY 2 cut(s) 889, 1037
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 2 cut(s) 650, 744
SacI GAGCTC 1 cut(s) 774
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 3 cut(s) 376, 494, 715
Sau96I GGNCC 3 cut(s) 736, 889, 1037
SchI GAGTC 4 cut(s) 149, 155, 158, 377
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 5 cut(s) 50, 592, 670, 774, 948
SfaNI GCATC 4 cut(s) 247, 270, 875, 1048
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 3 cut(s) 736, 889, 1037
SmiMI CAYNNNNRTG 2 cut(s) 650, 744
SmlI CTYRAG 2 cut(s) 334, 365
SmoI CTYRAG 2 cut(s) 334, 365
Sse9I AATT 8 cut(s) 113, 342, 482, 515, 570, 730, 913, 974
SsiI CCGC 1 cut(s) 909
SspI AATATT 1 cut(s) 998
SspMI CTAG 2 cut(s) 492, 776
SstI GAGCTC 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 1 cut(s) 1040
TaaI ACNGT 2 cut(s) 15, 555
TaqI TCGA 4 cut(s) 8, 548, 684, 797
TasI AATT 8 cut(s) 113, 342, 482, 515, 570, 730, 913, 974
TfiI GAWTC 3 cut(s) 135, 464, 804
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 55, 793
TseFI GTSAC 2 cut(s) 369, 555
Tsp45I GTSAC 2 cut(s) 369, 555
TspDTI ATGAA 4 cut(s) 30, 78, 620, 1047
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 2 cut(s) 55, 793
VneI GTGCAC 1 cut(s) 46
VpaK11BI GGWCC 3 cut(s) 736, 889, 1037
XapI RAATTY 5 cut(s) 113, 342, 482, 515, 913
XceI RCATGY 2 cut(s) 215, 655
XmnI GAANNNNTTC 2 cut(s) 107, 968
XspI CTAG 2 cut(s) 492, 776
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.