RchiOBHm_Chr6g0310971

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000586
Physical Location & Seq
Reverse (-)
68119548 .. 68122356
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27964

Sequence Viewer

Length: 1683 bp
ATGGGGGAACCCTCAAACGGAGCCGCCGGGAGAGGACGGCGGCGAGACTGGACGGAGCTACCTGAGAAAGCGGCGGAGTCGATATTCCGGCGTCTGGGGGCCATTGAGGTTTTGGAGAATGCTCAGAAGGTGTGCATGAAGTGGCGCAGAATCTGCAAGAACAACACTCGGATGTGGCGCACCATCGACATGAGAAATGATGGTGATCTCCAAGCCATGGACTACGACTTGGAGGTTATGTGCCGTCACGCCGTTGATCGTAGCCGTGGTGAGCTGGTCGATATCAATATCGAGCACTTCGGCACCGATCGGTTGCTTCATTACATCACTGATAGTTCAAGGGGGATCAGACGCCTCCGACTATTGTGTTGCAATAGCATATCAGATGAGGGATTGGGAAAAGTGGCTCAGAAACTTCCATTGTTGGAGGAACTTGACATTTCTCTATGCGGTAATATCTCACATGAAGCTGTACAAGTGGTTGGGCGCTCTTGCCCCCTTTTGAAATCATTCAAATTAAACAAAGAGTGGTGTATATTCTCAAATGATGAGCCTTATGCGTACCATTTTGGAAGTTGGTATTCATGTCATTGTTACCGAGAGAAACTTGCACCTTTTCCTTTCAAAGACGATTACAATGGAGTTGCATTTGCTATAGCAGGAACAATGGGTGGTTTACGCCACCTCCAGCTTTTCGGGAATAAGTTGACAAATGATGGCTTGAGAAATATTCTTGATTCTTGTCCTCATCTTTGTTCACTTGATCTACGCCACTGTTTCATTCTTAATCTGGATGGAGATTTGGGAAGAATATGTGCTGAACGAATTGAAAAACTGTGGCTTCCACATGATTCTACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGGTTACTGCTTTAAATGGACAGAGCTCCCAGACAATATTACAAGATCAATACTGTCACGGCTGGGAGCAATTGAGATCCTGGCCACTGCTCAGAAAGTGTGCTCAAAGTGGTTCTACATCTGCAAGGACCCATTGATGTGGCGCACCATCGACATGCACAATAAGTTTGATATTTCCAACTACAGGCCCTTCTACTTGCATGACTTGTGTGAAGATGCCATTGATCGTAGCTGTGGTAATTTGGTTGATATCAATGTTGAGAACTTCGGTACCAATTTTCTCCTAGATTATCTTGCAGAGAGGTCAAGAGGACTCAAACGCCTCCGTTTAGTGGGTTCTCATAGAATTACAGATGAGGGATTCCGTAAAGTGGCTTCAAAATTTCCAATGTTGGAGCACCTTGACATTACATTATTCGAGGATATCTCACATGAAACTCTAGCATTGGTTGGGCGATCATGCCCTCTTTTGAAATCATTCAAGTTTAACAAACAATGGTTCAGAGATGACTGCTGCGATAAGGCTGAGCGTAATGACTGTGCATTTGCTATAGCAGGAACCATGCACGGGTTACACCACCTCATGCTTTTCAGGAATCAACTGTCTAACAAAGGTTTGTCTGCAATTCTTGATGGCTGTCCTCATCTTGAGTCACTAGATCTACGACAGTGTTTCAATCTTAAATTGTGGGGAAAGACAGGTAGAAGATGTGCTGAACGAATTCAAAAGTTGTGGCTTCCCCAGGACTCCATTGACGACATTGACCCATCATATGATCTGGATGCTGAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

560

Amino Acids

64.54

Weight (kDa)

6.68

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 64 2.9e-06 F-box-like
F-box-like PF12937 302 - 348 1.1e-08 F-box-like
F-box PF00646 302 - 344 7.5e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1157
AccB1I GGYRCC 2 cut(s) 302, 1157
AccB7I CCANNNNNTGG 1 cut(s) 217
AciI CCGC 5 cut(s) 24, 40, 71, 74, 450
AclWI GGATC 2 cut(s) 353, 958
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 3 cut(s) 869, 1268, 1608
AcuI CTGAAG 1 cut(s) 906
AcyI GRCGYC 2 cut(s) 91, 352
AfaI GTAC 3 cut(s) 474, 563, 1159
AfiI CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1071, 1219, 1258, 1455
AjnI CCWGG 2 cut(s) 966, 1629
AluBI AGCT 6 cut(s) 58, 274, 470, 691, 913, 1119
AluI AGCT 6 cut(s) 58, 274, 470, 691, 913, 1119
Alw21I GWGCWC 4 cut(s) 297, 915, 992, 1287
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 353, 958
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 3 cut(s) 99, 969, 1073
ApeKI GCWGC 1 cut(s) 1401
ApoI RAATTY 3 cut(s) 869, 1268, 1608
ArsI GACNNNNNNTTYG 2 cut(s) 1415, 1447
Asp700I GAANNNNTTC 3 cut(s) 509, 1364, 1608
Asp718I GGTACC 1 cut(s) 1157
AspLEI GCGC 4 cut(s) 147, 180, 489, 1032
AspS9I GGNCC 3 cut(s) 99, 1015, 1074
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 215, 281
AvaII GGWCC 1 cut(s) 1015
BaeI ACNNNNGTAYC 2 cut(s) 1141, 1174
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 2 cut(s) 302, 1157
BanII GRGCYC 1 cut(s) 915
BarI GAAGNNNNNNTAC 2 cut(s) 1246, 1278
Bbv12I GWGCWC 4 cut(s) 297, 915, 992, 1287
BbvI GCAGC 1 cut(s) 1388
BccI CCATC 7 cut(s) 191, 194, 710, 788, 1043, 1514, 1663
BceAI ACGGC 5 cut(s) 53, 228, 236, 249, 962
BciT130I CCWGG 2 cut(s) 968, 1631
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 4 cut(s) 879, 1172, 1328, 1544
BfmI CTRYAG 3 cut(s) 654, 1069, 1437
BfoI RGCGCY 1 cut(s) 490
BglII AGATCT 2 cut(s) 881, 1546
BisI GCNGC 4 cut(s) 24, 41, 72, 1402
BlpI GCTNAGC 1 cut(s) 1413
BlsI GCNGC 4 cut(s) 25, 42, 73, 1403
Bme1390I CCNGG 3 cut(s) 28, 968, 1631
Bme18I GGWCC 1 cut(s) 1015
BmgT120I GGNCC 3 cut(s) 99, 1015, 1074
BmiI GGNNCC 7 cut(s) 9, 22, 100, 304, 1017, 1159, 1447
BmrFI CCNGG 3 cut(s) 28, 968, 1631
BmsI GCATC 2 cut(s) 1093, 1660
BplI GAGNNNNNCTC 2 cut(s) 1298, 1330
BpmI CTGGAG 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 1413
BpuEI CTTGAG 2 cut(s) 742, 1556
BpuMI CCSGG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 2 cut(s) 91, 352
BsaJI CCNNGG 3 cut(s) 216, 265, 1629
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 669, 699
Bsc4I CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1071, 1219, 1258, 1455
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 968, 1631
BseDI CCNNGG 3 cut(s) 216, 265, 1629
BseGI GGATG 3 cut(s) 177, 799, 1675
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1071, 1219, 1258, 1455
BseMII CTCAG 6 cut(s) 54, 137, 422, 849, 992, 1404
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 1388
BseYI CCCAGC 1 cut(s) 949
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 101, 971, 1075
BshNI GGYRCC 2 cut(s) 302, 1157
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 4 cut(s) 297, 915, 992, 1287
BsiSI CCGG 2 cut(s) 27, 88
BslI CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1071, 1219, 1258, 1455
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 3 cut(s) 101, 971, 1075
Bsp1286I GDGCHC 4 cut(s) 297, 915, 992, 1287
Bsp1407I TGTACA 1 cut(s) 472
Bsp1720I GCTNAGC 1 cut(s) 1413
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 5 cut(s) 24, 40, 71, 74, 450
BspANI GGCC 3 cut(s) 101, 971, 1075
BspCNI CTCAG 6 cut(s) 55, 136, 421, 850, 991, 1405
BspLI GGNNCC 7 cut(s) 9, 22, 100, 304, 1017, 1159, 1447
BspPI GGATC 2 cut(s) 353, 958
BspT107I GGYRCC 2 cut(s) 302, 1157
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 216, 265, 1629
BssNI GRCGYC 2 cut(s) 91, 352
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 968, 1631
Bst4CI ACNGT 6 cut(s) 776, 837, 942, 1427, 1491, 1557
BstACI GRCGYC 2 cut(s) 91, 352
BstAPI GCANNNNNTGC 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 472
BstDEI CTNAG 6 cut(s) 63, 123, 408, 858, 978, 1413
BstDSI CCRYGG 2 cut(s) 216, 265
BstF5I GGATG 3 cut(s) 177, 799, 1675
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 4 cut(s) 147, 180, 489, 1032
BstMAI GTCTC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 968, 1631
BstNSI RCATGY 1 cut(s) 1045
BstSCI CCNGG 3 cut(s) 26, 966, 1629
BstSFI CTRYAG 3 cut(s) 654, 1069, 1437
BstV1I GCAGC 1 cut(s) 1388
BstX2I RGATCY 3 cut(s) 881, 963, 1546
BstXI CCANNNNNNTGG 1 cut(s) 1026
BstYI RGATCY 3 cut(s) 881, 963, 1546
BsuRI GGCC 3 cut(s) 101, 971, 1075
BtgI CCRYGG 2 cut(s) 216, 265
BtsCI GGATG 3 cut(s) 177, 799, 1675
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 4 cut(s) 327, 772, 972, 1562
CaiI CAGNNNCTG 1 cut(s) 153
CfoI GCGC 4 cut(s) 147, 180, 489, 1032
Cfr13I GGNCC 3 cut(s) 99, 1015, 1074
CseI GACGC 2 cut(s) 80, 360
Csp6I GTAC 3 cut(s) 473, 562, 1158
CspCI CAANNNNNGTGG 2 cut(s) 1601, 1636
CviQI GTAC 3 cut(s) 473, 562, 1158
DdeI CTNAG 6 cut(s) 63, 123, 408, 858, 978, 1413
DraI TTTAAA 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 969
EciI GGCGGA 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 913
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 915
Eco32I GATATC 3 cut(s) 283, 1138, 1312
Eco47I GGWCC 1 cut(s) 1015
Eco53kI GAGCTC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 913
EcoO109I RGGNCCY 2 cut(s) 1015, 1074
EcoRI GAATTC 1 cut(s) 1608
EcoRII CCWGG 2 cut(s) 966, 1629
EcoRV GATATC 3 cut(s) 283, 1138, 1312
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 216
FauNDI CATATG 1 cut(s) 1660
Fnu4HI GCNGC 4 cut(s) 24, 41, 72, 1402
FokI GGATG 2 cut(s) 184, 806
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 4 cut(s) 24, 41, 72, 1402
FspBI CTAG 4 cut(s) 879, 1172, 1328, 1544
GlaI GCGC 4 cut(s) 146, 179, 488, 1031
GluI GCNGC 4 cut(s) 24, 41, 72, 1402
GsaI CCCAGC 1 cut(s) 953
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 3 cut(s) 101, 971, 1075
HapII CCGG 2 cut(s) 27, 88
HgaI GACGC 2 cut(s) 80, 360
HhaI GCGC 4 cut(s) 147, 180, 489, 1032
Hin1I GRCGYC 2 cut(s) 91, 352
Hin6I GCGC 4 cut(s) 145, 178, 487, 1030
HinP1I GCGC 4 cut(s) 145, 178, 487, 1030
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 9 cut(s) 77, 150, 737, 851, 1200, 1248, 1483, 1538, 1634
HpaII CCGG 2 cut(s) 27, 88
HphI GGTGA 2 cut(s) 215, 281
Hpy166II GTNNAC 3 cut(s) 677, 708, 758
Hpy188I TCNGA 9 cut(s) 126, 171, 350, 359, 385, 411, 886, 981, 1391
Hpy188III TCNNGA 8 cut(s) 697, 734, 791, 1194, 1480, 1517, 1535, 1667
Hpy8I GTNNAC 3 cut(s) 677, 708, 758
HpyAV CCTTC 3 cut(s) 121, 881, 1087
HpyCH4III ACNGT 6 cut(s) 776, 837, 942, 1427, 1491, 1557
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 6 cut(s) 63, 123, 408, 858, 978, 1413
Hsp92I GRCGYC 2 cut(s) 91, 352
HspAI GCGC 4 cut(s) 145, 178, 487, 1030
KpnI GGTACC 1 cut(s) 1161
LmnI GCTCC 5 cut(s) 20, 55, 918, 953, 1282
Lsp1109I GCAGC 1 cut(s) 1388
LweI GCATC 2 cut(s) 1093, 1660
MaeI CTAG 4 cut(s) 879, 1172, 1328, 1544
MaeIII GTNAC 6 cut(s) 245, 593, 890, 942, 1458, 1539
MboII GAAGA 3 cut(s) 819, 1112, 1605
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 3 cut(s) 881, 963, 1546
MhlI GDGCHC 4 cut(s) 297, 915, 992, 1287
MlsI TGGCCA 1 cut(s) 971
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 4 cut(s) 86, 1194, 1547, 1628
MmeI TCCRAC 4 cut(s) 382, 405, 1089, 1260
Mox20I TGGCCA 1 cut(s) 971
MroXI GAANNNNTTC 3 cut(s) 509, 1364, 1608
MscI TGGCCA 1 cut(s) 971
MseI TTAA 5 cut(s) 518, 786, 900, 1374, 1569
MslI CAYNNNNRTG 4 cut(s) 170, 188, 1024, 1040
Msp20I TGGCCA 1 cut(s) 971
MspI CCGG 2 cut(s) 27, 88
MspR9I CCNGG 3 cut(s) 28, 968, 1631
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 968, 1631
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 1660
NlaIV GGNNCC 7 cut(s) 9, 22, 100, 304, 1017, 1159, 1447
NmuCI GTSAC 3 cut(s) 245, 942, 1539
NspI RCATGY 1 cut(s) 1045
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 3 cut(s) 509, 1364, 1608
PfeI GAWTC 5 cut(s) 150, 737, 851, 1248, 1483
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 4 cut(s) 25, 42, 73, 1403
Ple19I CGATCG 1 cut(s) 310
PleI GAGTC 4 cut(s) 85, 1194, 1546, 1628
PpsI GAGTC 4 cut(s) 85, 1194, 1546, 1628
PpuMI RGGWCCY 1 cut(s) 1015
Psp124BI GAGCTC 1 cut(s) 915
Psp5II RGGWCCY 1 cut(s) 1015
Psp6I CCWGG 2 cut(s) 966, 1629
PspFI CCCAGC 1 cut(s) 949
PspGI CCWGG 2 cut(s) 966, 1629
PspN4I GGNNCC 7 cut(s) 9, 22, 100, 304, 1017, 1159, 1447
PspPI GGNCC 3 cut(s) 99, 1015, 1074
PspPPI RGGWCCY 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 3 cut(s) 881, 963, 1546
PvuI CGATCG 1 cut(s) 310
RsaI GTAC 3 cut(s) 474, 563, 1159
RsaNI GTAC 3 cut(s) 473, 562, 1158
RseI CAYNNNNRTG 4 cut(s) 170, 188, 1024, 1040
SacI GAGCTC 1 cut(s) 915
SaqAI TTAA 5 cut(s) 518, 786, 900, 1374, 1569
SatI GCNGC 4 cut(s) 24, 41, 72, 1402
Sau96I GGNCC 3 cut(s) 99, 1015, 1074
SchI GAGTC 4 cut(s) 86, 1194, 1547, 1628
ScrFI CCNGG 3 cut(s) 28, 968, 1631
SduI GDGCHC 4 cut(s) 297, 915, 992, 1287
SfaNI GCATC 2 cut(s) 1093, 1660
SfcI CTRYAG 3 cut(s) 654, 1069, 1437
SinI GGWCC 1 cut(s) 1015
SmiMI CAYNNNNRTG 4 cut(s) 170, 188, 1024, 1040
SmlI CTYRAG 2 cut(s) 721, 1535
SmoI CTYRAG 2 cut(s) 721, 1535
SsiI CCGC 5 cut(s) 24, 40, 71, 74, 450
SspI AATATT 2 cut(s) 730, 925
SspMI CTAG 4 cut(s) 879, 1172, 1328, 1544
SstI GAGCTC 1 cut(s) 915
StyD4I CCNGG 3 cut(s) 26, 966, 1629
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 6 cut(s) 776, 837, 942, 1427, 1491, 1557
TaqI TCGA 6 cut(s) 80, 186, 279, 291, 1038, 1305
TatI WGTACW 1 cut(s) 472
TauI GCSGC 3 cut(s) 26, 43, 74
TfiI GAWTC 5 cut(s) 150, 737, 851, 1248, 1483
Tru1I TTAA 5 cut(s) 518, 786, 900, 1374, 1569
Tru9I TTAA 5 cut(s) 518, 786, 900, 1374, 1569
TscAI CASTG 4 cut(s) 334, 779, 979, 1562
TseFI GTSAC 3 cut(s) 245, 942, 1539
TseI GCWGC 1 cut(s) 1401
Tsp45I GTSAC 3 cut(s) 245, 942, 1539
TspDTI ATGAA 6 cut(s) 152, 308, 480, 573, 769, 1335
TspGWI ACGGA 4 cut(s) 33, 68, 1202, 1241
TspRI CASTG 4 cut(s) 334, 779, 979, 1562
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 1015
XapI RAATTY 3 cut(s) 869, 1268, 1608
XceI RCATGY 1 cut(s) 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmnI GAANNNNTTC 3 cut(s) 509, 1364, 1608
XspI CTAG 4 cut(s) 879, 1172, 1328, 1544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.