FvH4_2g31840

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000586
Physical Location & Seq
Forward (+)
24307591 .. 24309959
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31840.t1

Sequence Viewer

Length: 1557 bp
ATGGGGGAGCCCTCAAATGGAGCCGCCGGGAGAGGACTGCGGCGAGACTGGACGGAGCTCCCTGAGAACGCGGCGGGGGAGATGTTCATGCGTCTGGGAGCTATTGAGGTTTTGGAGAGTGCTCAGAAGGTTTGCATGAAGTGGCGCAGAATCTGCAAGAACAACACTAGGATGTGGCGCACCATCGACATGAGAAATGATGGTGATCTAAAAGCCTTGGAGTACGATTTGGAGATCATGTGCCGTCACGCCGTTGATCTTAGCCGTGGTGAGCTGGTTGATGTTAATATCGAGCACTTCGGTACCGATCAGTTGCTTCATGCAAGAGGGATCAGACGTCTCCGACTATTGAGTTGCAAGAGCGTATCAGATGAGGGACTGGTAAAAGTGGCTCAGAAGCTGCCATTGTTGGAGGAACTTGACATTTCTTTATGCGGTAATATCTCACATGTAGCTCTAGAAGTGAAGTATTATTACCAAGAGAAGCGTATACCTTTCCCTCTCAAAGAGTACAATGGAGATGCATTAGCTATAGCAGGAACAATGGGTGGTTTACGCCACCTTCAGCTTTTCGGGAATAAGTTAACAAATGATGGCTTGAGATATATTCTCGACTCTTGTCCTCATCTTTGTTCACTTGATCTTCGCCATTGTTTCATTCTTAATCTGGATGGAGAGTTGGGAAGATTATGTGCTGAACGAATTGAAAATCTGTGGCTTCCCCATGATTCAACTGAGGGCAAGGGGTTTGTTGCCAGATCTGAAAGTTACTGCTTTAAGTGGACAGAGCTCCCAGACAATATTACAAGATCAATACTGTCACGGCTGGGAGCGGTCAAGATCCTTGCCACTGCTCAGAAAGTGTGCTCAAAGTGGTTCTACATCTGCAAGGACCCATTGATGTGGCGCACCATTGACATGCACAATAAGCTTAATGTTTCCAACTACAGGCCCTTCTACTTGCATGACCTGTGTGAAGAAGCCATTAGACGTAGCTGTGGTAATTTGGTTGATATCAATGTTGAGAACTTCGGTATCAATTTTCTCCTCGAATATCTTGCAGATAGGGCAAAAGGACTCGAACGCCTCCGTTTAGTGGATTCTCACAGAATCACAGATGAGGGATTCCGTAAAGCGGCCTCAGAATTTTCATTGTTGGAGGACCTTGACATTACATTGGACAATGATATCTCACATGAAACTATAGCATTGGTCGGGCGCTCATGCCCCCTTTTGAAATCATTCAGGTTCAACAAACAGTGGTTCATAGATGACTGCAAGAAGGCTGAGCGTGACGACTGTGCATTTGCTATAGCACGAAACATGCAGGGGTTACACCACCTCATGCTTTTCAGGAACCAACTGACTAACAAAGGCTTGTCTGCAATTCTTGATGGTTGTCCTCATCTTGAATCTCTTGATCTGCGACAGTGTTTCAATCTTAAATTGGGGGGAAAGGTGGGTAGAAGATGTGCTGACCGGATCCAAAAGCTGCGGCTTCCCCAGGATTCCATTCGCGATATTGATCCATCATATAATCTGGATCCTAAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

519

Amino Acids

59.42

Weight (kDa)

7.49

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 261 - 307 9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 340
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 833
AccI GTMKAC 1 cut(s) 490
AccII CGCG 2 cut(s) 71, 1518
AciI CCGC 8 cut(s) 24, 40, 71, 74, 435, 833, 1136, 1495
AclWI GGATC 7 cut(s) 338, 835, 1477, 1490, 1520, 1538, 1551
AcsI RAATTY 1 cut(s) 1145
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 3 cut(s) 224, 304, 512
AfiI CCNNNNNNNGG 4 cut(s) 17, 948, 1096, 1135
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 6 cut(s) 707, 732, 1237, 1252, 1412, 1438
AjnI CCWGG 1 cut(s) 1503
Alw21I GWGCWC 5 cut(s) 60, 124, 297, 792, 869
Alw26I GTCTC 2 cut(s) 39, 344
AlwI GGATC 7 cut(s) 338, 835, 1477, 1490, 1520, 1538, 1551
AlwNI CAGNNNCTG 2 cut(s) 153, 400
AoxI GGCC 2 cut(s) 950, 1137
ApeKI GCWGC 2 cut(s) 400, 1492
ApoI RAATTY 1 cut(s) 1145
ArsI GACNNNNNNTTYG 2 cut(s) 1289, 1321
Asp700I GAANNNNTTC 1 cut(s) 1241
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 4 cut(s) 147, 180, 909, 1221
AspS9I GGNCC 3 cut(s) 892, 951, 1162
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 215, 281
AvaII GGWCC 2 cut(s) 892, 1162
BaeI ACNNNNGTAYC 4 cut(s) 286, 319, 1018, 1051
BamHI GGATCC 2 cut(s) 1482, 1543
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 3 cut(s) 12, 60, 792
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
Bbv12I GWGCWC 5 cut(s) 60, 124, 297, 792, 869
BbvI GCAGC 2 cut(s) 387, 1479
BccI CCATC 6 cut(s) 191, 194, 587, 665, 1388, 1537
BceAI ACGGC 4 cut(s) 228, 236, 249, 839
BcgI CGANNNNNNTGC 2 cut(s) 1040, 1074
BciT130I CCWGG 1 cut(s) 1505
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 39, 344
BfaI CTAG 2 cut(s) 168, 458
BfmI CTRYAG 4 cut(s) 531, 946, 1203, 1311
BfoI RGCGCY 1 cut(s) 1222
BglII AGATCT 1 cut(s) 758
BisI GCNGC 7 cut(s) 24, 41, 72, 401, 1137, 1493, 1496
BlpI GCTNAGC 1 cut(s) 1287
BlsI GCNGC 7 cut(s) 25, 42, 73, 402, 1138, 1494, 1497
Bme1390I CCNGG 2 cut(s) 28, 1505
Bme18I GGWCC 2 cut(s) 892, 1162
BmgT120I GGNCC 3 cut(s) 892, 951, 1162
BmiI GGNNCC 7 cut(s) 9, 22, 304, 894, 1358, 1484, 1545
BmrFI CCNGG 2 cut(s) 28, 1505
BmsI GCATC 1 cut(s) 511
BoxI GACNNNNGTC 1 cut(s) 618
Bpu1102I GCTNAGC 1 cut(s) 1287
BpuEI CTTGAG 1 cut(s) 619
BpuMI CCSGG 1 cut(s) 28
BsaBI GATNNNNATC 2 cut(s) 204, 1524
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 216, 265, 1503
BsaWI WCCGGW 1 cut(s) 1479
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 948, 1096, 1135
Bse1I ACTGG 2 cut(s) 53, 384
Bse8I GATNNNNATC 2 cut(s) 204, 1524
BseBI CCWGG 1 cut(s) 1505
BseDI CCNNGG 3 cut(s) 216, 265, 1503
BseGI GGATG 2 cut(s) 177, 676
BseJI GATNNNNATC 2 cut(s) 204, 1524
BseLI CCNNNNNNNGG 4 cut(s) 17, 948, 1096, 1135
BseMII CTCAG 7 cut(s) 54, 137, 407, 726, 869, 1155, 1278
BseNI ACTGG 2 cut(s) 53, 384
BseRI GAGGAG 1 cut(s) 1037
BseXI GCAGC 2 cut(s) 387, 1479
BseYI CCCAGC 1 cut(s) 826
Bsh1236I CGCG 2 cut(s) 71, 1518
BshFI GGCC 2 cut(s) 952, 1139
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 5 cut(s) 60, 124, 297, 792, 869
BsiSI CCGG 2 cut(s) 27, 1480
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 4 cut(s) 17, 948, 1096, 1135
BsmAI GTCTC 2 cut(s) 39, 344
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 2 cut(s) 952, 1139
Bsp1286I GDGCHC 6 cut(s) 12, 60, 124, 297, 792, 869
Bsp1720I GCTNAGC 1 cut(s) 1287
Bsp68I TCGCGA 1 cut(s) 1518
BspACI CCGC 8 cut(s) 24, 40, 71, 74, 435, 833, 1136, 1495
BspANI GGCC 2 cut(s) 952, 1139
BspCNI CTCAG 7 cut(s) 55, 136, 406, 727, 868, 1154, 1279
BspFNI CGCG 2 cut(s) 71, 1518
BspLI GGNNCC 7 cut(s) 9, 22, 304, 894, 1358, 1484, 1545
BspPI GGATC 7 cut(s) 338, 835, 1477, 1490, 1520, 1538, 1551
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 833
BsrI ACTGG 2 cut(s) 53, 384
BssECI CCNNGG 3 cut(s) 216, 265, 1503
BssNAI GTATAC 1 cut(s) 491
BssNI GRCGYC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 1505
Bst4CI ACNGT 4 cut(s) 819, 1260, 1301, 1431
BstACI GRCGYC 1 cut(s) 337
BstAPI GCANNNNNTGC 1 cut(s) 153
BstDEI CTNAG 8 cut(s) 63, 123, 260, 393, 735, 855, 1141, 1287
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 177, 676
BstFNI CGCG 2 cut(s) 71, 1518
BstH2I RGCGCY 1 cut(s) 1222
BstHHI GCGC 4 cut(s) 147, 180, 909, 1221
BstMAI GTCTC 2 cut(s) 39, 344
BstMWI GCNNNNNNNGC 3 cut(s) 153, 928, 1067
BstNI CCWGG 1 cut(s) 1505
BstNSI RCATGY 3 cut(s) 452, 922, 1327
BstPAI GACNNNNGTC 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 26, 1503
BstSFI CTRYAG 4 cut(s) 531, 946, 1203, 1311
BstUI CGCG 2 cut(s) 71, 1518
BstV1I GCAGC 2 cut(s) 387, 1479
BstX2I RGATCY 4 cut(s) 758, 840, 1482, 1543
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 4 cut(s) 758, 840, 1482, 1543
BstZ17I GTATAC 1 cut(s) 491
BsuRI GGCC 2 cut(s) 952, 1139
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 2 cut(s) 177, 676
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 3 cut(s) 849, 1265, 1436
BtuMI TCGCGA 1 cut(s) 1518
CaiI CAGNNNCTG 2 cut(s) 153, 400
CfoI GCGC 4 cut(s) 147, 180, 909, 1221
Cfr13I GGNCC 3 cut(s) 892, 951, 1162
CseI GACGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 223, 303, 511
CviQI GTAC 3 cut(s) 223, 303, 511
DdeI CTNAG 8 cut(s) 63, 123, 260, 393, 735, 855, 1141, 1287
Ecl136II GAGCTC 2 cut(s) 58, 790
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 3 cut(s) 12, 60, 792
Eco32I GATATC 2 cut(s) 1015, 1189
Eco47I GGWCC 2 cut(s) 892, 1162
Eco53kI GAGCTC 2 cut(s) 58, 790
Eco57I CTGAAG 1 cut(s) 548
EcoICRI GAGCTC 2 cut(s) 58, 790
EcoO109I RGGNCCY 3 cut(s) 892, 951, 1162
EcoRII CCWGG 1 cut(s) 1503
EcoRV GATATC 2 cut(s) 1015, 1189
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 3 cut(s) 12, 60, 792
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 344
FaqI GGGAC 1 cut(s) 390
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 7 cut(s) 24, 41, 72, 401, 1137, 1493, 1496
FokI GGATG 2 cut(s) 184, 683
FriOI GRGCYC 3 cut(s) 12, 60, 792
Fsp4HI GCNGC 7 cut(s) 24, 41, 72, 401, 1137, 1493, 1496
FspBI CTAG 2 cut(s) 168, 458
GlaI GCGC 4 cut(s) 146, 179, 908, 1220
GluI GCNGC 7 cut(s) 24, 41, 72, 401, 1137, 1493, 1496
GsaI CCCAGC 1 cut(s) 830
HaeII RGCGCY 1 cut(s) 1222
HaeIII GGCC 2 cut(s) 952, 1139
HapII CCGG 2 cut(s) 27, 1480
HgaI GACGC 1 cut(s) 80
HhaI GCGC 4 cut(s) 147, 180, 909, 1221
Hin1I GRCGYC 1 cut(s) 337
Hin6I GCGC 4 cut(s) 145, 178, 907, 1219
HinP1I GCGC 4 cut(s) 145, 178, 907, 1219
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 9 cut(s) 150, 614, 728, 1077, 1100, 1110, 1125, 1412, 1508
HpaI GTTAAC 1 cut(s) 585
HpaII CCGG 2 cut(s) 27, 1480
HphI GGTGA 2 cut(s) 215, 281
Hpy166II GTNNAC 5 cut(s) 491, 554, 585, 635, 783
Hpy188I TCNGA 8 cut(s) 126, 335, 344, 370, 396, 763, 858, 1144
Hpy8I GTNNAC 5 cut(s) 491, 554, 585, 635, 783
HpyAV CCTTC 4 cut(s) 121, 572, 964, 1276
HpyCH4III ACNGT 4 cut(s) 819, 1260, 1301, 1431
HpyCH4IV ACGT 2 cut(s) 337, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 928, 1067
HpyF3I CTNAG 8 cut(s) 63, 123, 260, 393, 735, 855, 1141, 1287
HpySE526I ACGT 2 cut(s) 337, 991
Hsp92I GRCGYC 1 cut(s) 337
HspAI GCGC 4 cut(s) 145, 178, 907, 1219
KpnI GGTACC 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 585
LmnI GCTCC 7 cut(s) 7, 20, 55, 63, 98, 795, 830
Lsp1109I GCAGC 2 cut(s) 387, 1479
LweI GCATC 1 cut(s) 511
MaeI CTAG 2 cut(s) 168, 458
MaeII ACGT 2 cut(s) 337, 991
MaeIII GTNAC 5 cut(s) 245, 767, 819, 1292, 1332
MbiI CCGCTC 1 cut(s) 833
MboII GAAGA 4 cut(s) 635, 696, 989, 1479
MflI RGATCY 4 cut(s) 758, 840, 1482, 1543
MhlI GDGCHC 6 cut(s) 12, 60, 124, 297, 792, 869
MluCI AATT 6 cut(s) 702, 1003, 1039, 1145, 1386, 1445
MlyI GAGTC 2 cut(s) 608, 1071
MmeI TCCRAC 4 cut(s) 367, 390, 966, 1137
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 1241
MseI TTAA 6 cut(s) 285, 584, 663, 777, 933, 1443
MslI CAYNNNNRTG 4 cut(s) 170, 188, 901, 917
MspI CCGG 2 cut(s) 27, 1480
MspR9I CCNGG 2 cut(s) 28, 1505
MvaI CCWGG 1 cut(s) 1505
MvnI CGCG 2 cut(s) 71, 1518
MwoI GCNNNNNNNGC 3 cut(s) 153, 928, 1067
NciI CCSGG 1 cut(s) 28
NlaIV GGNNCC 7 cut(s) 9, 22, 304, 894, 1358, 1484, 1545
NmuCI GTSAC 3 cut(s) 245, 819, 1292
NruI TCGCGA 1 cut(s) 1518
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 3 cut(s) 452, 922, 1327
PciI ACATGT 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 1241
PfeI GAWTC 7 cut(s) 150, 728, 1100, 1110, 1125, 1412, 1508
PkrI GCNGC 7 cut(s) 25, 42, 73, 402, 1138, 1494, 1497
PleI GAGTC 2 cut(s) 608, 1071
PpsI GAGTC 2 cut(s) 608, 1071
PpuMI RGGWCCY 2 cut(s) 892, 1162
PscI ACATGT 1 cut(s) 448
PshAI GACNNNNGTC 1 cut(s) 618
Psp124BI GAGCTC 2 cut(s) 60, 792
Psp5II RGGWCCY 2 cut(s) 892, 1162
Psp6I CCWGG 1 cut(s) 1503
PspFI CCCAGC 1 cut(s) 826
PspGI CCWGG 1 cut(s) 1503
PspN4I GGNNCC 7 cut(s) 9, 22, 304, 894, 1358, 1484, 1545
PspPI GGNCC 3 cut(s) 892, 951, 1162
PspPPI RGGWCCY 2 cut(s) 892, 1162
PstNI CAGNNNCTG 2 cut(s) 153, 400
PsuI RGATCY 4 cut(s) 758, 840, 1482, 1543
RruI TCGCGA 1 cut(s) 1518
RsaI GTAC 3 cut(s) 224, 304, 512
RsaNI GTAC 3 cut(s) 223, 303, 511
RseI CAYNNNNRTG 4 cut(s) 170, 188, 901, 917
SacI GAGCTC 2 cut(s) 60, 792
SaqAI TTAA 6 cut(s) 285, 584, 663, 777, 933, 1443
SatI GCNGC 7 cut(s) 24, 41, 72, 401, 1137, 1493, 1496
Sau96I GGNCC 3 cut(s) 892, 951, 1162
SchI GAGTC 2 cut(s) 608, 1071
ScrFI CCNGG 2 cut(s) 28, 1505
SduI GDGCHC 6 cut(s) 12, 60, 124, 297, 792, 869
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 4 cut(s) 531, 946, 1203, 1311
SinI GGWCC 2 cut(s) 892, 1162
SmiMI CAYNNNNRTG 4 cut(s) 170, 188, 901, 917
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
Sse9I AATT 6 cut(s) 702, 1003, 1039, 1145, 1386, 1445
SsiI CCGC 8 cut(s) 24, 40, 71, 74, 435, 833, 1136, 1495
SspI AATATT 1 cut(s) 802
SspMI CTAG 2 cut(s) 168, 458
SstI GAGCTC 2 cut(s) 60, 792
StyD4I CCNGG 2 cut(s) 26, 1503
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 4 cut(s) 819, 1260, 1301, 1431
TaiI ACGT 2 cut(s) 340, 994
TaqI TCGA 5 cut(s) 186, 291, 612, 1050, 1080
TasI AATT 6 cut(s) 702, 1003, 1039, 1145, 1386, 1445
TatI WGTACW 1 cut(s) 510
TauI GCSGC 5 cut(s) 26, 43, 74, 1139, 1498
TfiI GAWTC 7 cut(s) 150, 728, 1100, 1110, 1125, 1412, 1508
Tru1I TTAA 6 cut(s) 285, 584, 663, 777, 933, 1443
Tru9I TTAA 6 cut(s) 285, 584, 663, 777, 933, 1443
TscAI CASTG 3 cut(s) 856, 1265, 1436
TseFI GTSAC 3 cut(s) 245, 819, 1292
TseI GCWGC 2 cut(s) 400, 1492
Tsp45I GTSAC 3 cut(s) 245, 819, 1292
TspDTI ATGAA 7 cut(s) 76, 152, 308, 646, 1140, 1212, 1255
TspGWI ACGGA 3 cut(s) 68, 1079, 1118
TspRI CASTG 3 cut(s) 856, 1265, 1436
VpaK11BI GGWCC 2 cut(s) 892, 1162
XapI RAATTY 1 cut(s) 1145
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 3 cut(s) 452, 922, 1327
XmiI GTMKAC 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 1241
XspI CTAG 2 cut(s) 168, 458
ZraI GACGTC 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.