RLG00000010445

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000586
Physical Location & Seq
Forward (+)
1679001 .. 1683199
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010445

Sequence Viewer

Length: 1839 bp
ATGGGGGAACCCTCAAACGGAGGACGGCGGCGAGACTGGACGGAGATACCTGAGAACGCGGCGGAGTCGATATTCCGGCATCTGGGGGCCATTGAGGTTTTGGAGAATGCTCAGAAGGTGTGCATGAACTGGCGCAGAATCTGCAAGAACAACACTCGGATGTGGCGCACCATCGACATGAGAAATGGTGGTGATCTCCAAGCCATGGACTACGACTTGGAGGTTATGTGCCGTCACGCCGTTGATCGTAGCCGTGGTGAGCTGGTCGATATCAATATCGAGCACTTCGGCACCGATCGGTTGCTTCATTACATCACTGATAGTAATATCTCACATGAAGCTGTAGAAGTGGTTGGGCGCTCTTGCCCTCTTTTGAAATCATTCAAATTAAACAAAGAGTGGTGTATATTCTCAAATGATGAGCCTTATGCGTACCATTTTGGAAGTTGGTATTCATGTCATTGTTACCGAGAGAAACTTACACCTTTTCCTTTCAAAGACGATTACAATGGAGTTGCATTTGCTATAGCAGGAACAATGGGTGGTTTACGCCACCTCCAGCTTTTCGGGAATAAGTTGACAAATGATGGCTTGAGAAATATTCTTGATTCTTGTCCTCATCTTTGTTCACTTGATCTACGCCACTGTTTCATTCTTAATCTGGATGGAGATTTGGGAAGAATATGTGCTGAACGAATTGAAAAACTGTGGCTCCCACATGATTCTACTGAGGGCAAAGAATTTGTTGCTAGATCTGAAGGTTACTGCTTTAAATGGACAGAGCTCCCAGACAATATTACAAGATCAATACTGTCACGGCTGGGAGCAATTGAGATCCTGGCCACTGCTCAGAAAGTGTGCTCAAAGTGGTTCTACATCTGCAAGGACCCATTGATGTGGCGCACCATCGACATGCACAATAAGTTTGATATTTCCAACTACAGGCCCTTCTACTTGCATGACTTGTGTGAAGATGCCATTGATCGTAGCTGTGGTAATTTGGTTGATATCAATGTTGAGAACTTCGGTACCAATTTTCTCCTAGATTATCTTGCAGAGAGAGATGACTGCTGCGATAAGGCTGAGCGTAATGACTGTGCATTTGCTATAGCAGGAACCATGCACGGGTTACACCACCTCATGCTTTTCAGGAATCAACTGTCTAACAAAGGTTTGTCTGCAATTCTTGATGGCTGTCCTCATCTTGAGTCACTAGATCTACGACAGTGTTTCAATCTTGAATTGAGGGGAAAGACGGGTAGAAAATGTGCTGAACGAATTCAAAAGTTGTGGCTTCCCCAGGACTCCATCGATGACATTGACCCATCATATGATCTGGATGCTGAATGCAATTTTCCATCCATGGTAACATTTGCTATAGCAGGAACGATGCACAGGTTACACCACCTCATGCTTCTTGGGAATGAAATGACTAATGAAGGGTTGGGTGCAATTCTTGATGGTTGTCCTCATCTTGAGTCACTTGATTTGCGACGGTGTTTGAATCTGACATTGGAGGGAAATCTGGGTGGAAGATGCTTTGAACGAATTCAAAAGGTCAAATTAACTGATGACATGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAGATGATATCATACTCTAACCCGAACAGTGCAGGAGCTCTGGTCACTGAAGGCATCTTGGATTCCATGTCTGCTGGTATTCTGGTCTACATGGCCTTGGTGGACCTGATTGCTGCTGACTTTCTGAGCAAGAGGATGAGCTGCAGTTTTCGGCTTCAAATTCTGTCTTATTGCTTGCTATTTCTTGGAGCTGGGTCGATGTCTTTGCTTGCAATTTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

613

Amino Acids

69.95

Weight (kDa)

6.5

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 259 - 305 1.3e-08 F-box-like
F-box PF00646 259 - 301 8.4e-06 F-box domain
Zip PF02535 545 - 609 8.7e-15 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1028
AccB1I GGYRCC 2 cut(s) 290, 1028
AccB7I CCANNNNNTGG 1 cut(s) 205
AccI GTMKAC 1 cut(s) 1701
AccII CGCG 1 cut(s) 59
AciI CCGC 3 cut(s) 28, 59, 62
AclWI GGATC 1 cut(s) 829
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 4 cut(s) 740, 1278, 1548, 1773
AcuI CTGAAG 2 cut(s) 777, 1683
AfaI GTAC 2 cut(s) 434, 1030
AfiI CCNNNNNNNGG 5 cut(s) 17, 82, 205, 942, 1125
AjnI CCWGG 2 cut(s) 837, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 1496, 1528
AluBI AGCT 8 cut(s) 262, 341, 562, 784, 990, 1652, 1755, 1805
AluI AGCT 8 cut(s) 262, 341, 562, 784, 990, 1652, 1755, 1805
Alw21I GWGCWC 4 cut(s) 285, 786, 863, 1654
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 829
AlwNI CAGNNNCTG 1 cut(s) 141
AoxI GGCC 4 cut(s) 87, 840, 944, 1707
ApeKI GCWGC 3 cut(s) 1071, 1727, 1755
ApoI RAATTY 4 cut(s) 740, 1278, 1548, 1773
ArsI GACNNNNNNTTYG 2 cut(s) 1085, 1117
Asp700I GAANNNNTTC 3 cut(s) 380, 1278, 1548
Asp718I GGTACC 1 cut(s) 1028
AspLEI GCGC 4 cut(s) 135, 168, 360, 903
AspS9I GGNCC 4 cut(s) 87, 886, 945, 1717
AsuHPI GGTGA 2 cut(s) 203, 269
AvaII GGWCC 2 cut(s) 886, 1717
BaeI ACNNNNGTAYC 2 cut(s) 1012, 1045
BalI TGGCCA 1 cut(s) 842
BanI GGYRCC 2 cut(s) 290, 1028
BanII GRGCYC 2 cut(s) 786, 1654
Bbv12I GWGCWC 4 cut(s) 285, 786, 863, 1654
BbvI GCAGC 3 cut(s) 1058, 1714, 1742
BccI CCATC 9 cut(s) 179, 581, 659, 914, 1184, 1316, 1333, 1366, 1454
BceAI ACGGC 5 cut(s) 41, 216, 224, 237, 833
BcgI CGANNNNNNTGC 2 cut(s) 1801, 1835
BciT130I CCWGG 2 cut(s) 839, 1301
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 3 cut(s) 750, 1043, 1214
BfmI CTRYAG 6 cut(s) 342, 525, 940, 1107, 1377, 1756
BfoI RGCGCY 1 cut(s) 361
BglII AGATCT 2 cut(s) 752, 1216
BisI GCNGC 5 cut(s) 29, 60, 1072, 1728, 1756
BlpI GCTNAGC 1 cut(s) 1083
BlsI GCNGC 5 cut(s) 30, 61, 1073, 1729, 1757
Bme1390I CCNGG 2 cut(s) 839, 1301
Bme18I GGWCC 2 cut(s) 886, 1717
BmgT120I GGNCC 4 cut(s) 87, 886, 945, 1717
BmiI GGNNCC 7 cut(s) 9, 88, 292, 713, 888, 1030, 1117
BmrFI CCNGG 2 cut(s) 839, 1301
BmsI GCATC 6 cut(s) 88, 964, 1330, 1380, 1526, 1677
BpmI CTGGAG 1 cut(s) 542
Bpu1102I GCTNAGC 1 cut(s) 1083
BpuEI CTTGAG 3 cut(s) 613, 1226, 1496
Bsa29I ATCGAT 1 cut(s) 1311
BsaJI CCNNGG 5 cut(s) 204, 253, 1299, 1362, 1710
BsaXI ACNNNNNCTCC 8 cut(s) 212, 242, 540, 570, 696, 726, 1641, 1671
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 82, 205, 942, 1125
Bse1I ACTGG 2 cut(s) 41, 134
BseBI CCWGG 2 cut(s) 839, 1301
BseCI ATCGAT 1 cut(s) 1311
BseDI CCNNGG 5 cut(s) 204, 253, 1299, 1362, 1710
BseGI GGATG 5 cut(s) 165, 670, 1345, 1358, 1755
BseLI CCNNNNNNNGG 5 cut(s) 17, 82, 205, 942, 1125
BseMII CTCAG 6 cut(s) 42, 125, 720, 863, 1074, 1730
BseNI ACTGG 2 cut(s) 41, 134
BseXI GCAGC 3 cut(s) 1058, 1714, 1742
BseYI CCCAGC 2 cut(s) 820, 1805
BsgI GTGCAG 1 cut(s) 1665
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 89, 842, 946, 1709
BshNI GGYRCC 2 cut(s) 290, 1028
BshVI ATCGAT 1 cut(s) 1311
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 4 cut(s) 285, 786, 863, 1654
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 5 cut(s) 17, 82, 205, 942, 1125
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 2 cut(s) 112, 1352
BsnI GGCC 4 cut(s) 89, 842, 946, 1709
Bsp1286I GDGCHC 4 cut(s) 285, 786, 863, 1654
Bsp1720I GCTNAGC 1 cut(s) 1083
Bsp19I CCATGG 2 cut(s) 204, 1362
BspACI CCGC 3 cut(s) 28, 59, 62
BspANI GGCC 4 cut(s) 89, 842, 946, 1709
BspCNI CTCAG 6 cut(s) 43, 124, 721, 862, 1075, 1731
BspDI ATCGAT 1 cut(s) 1311
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 7 cut(s) 9, 88, 292, 713, 888, 1030, 1117
BspMAI CTGCAG 1 cut(s) 1760
BspPI GGATC 1 cut(s) 829
BspT107I GGYRCC 2 cut(s) 290, 1028
BsrI ACTGG 2 cut(s) 41, 134
BssECI CCNNGG 5 cut(s) 204, 253, 1299, 1362, 1710
BssT1I CCWWGG 3 cut(s) 204, 1362, 1710
Bst2UI CCWGG 2 cut(s) 839, 1301
Bst4CI ACNGT 8 cut(s) 647, 708, 813, 1097, 1161, 1227, 1497, 1643
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 1790, 1824
BstDEI CTNAG 7 cut(s) 51, 111, 729, 849, 1083, 1739, 1836
BstDSI CCRYGG 3 cut(s) 204, 253, 1362
BstF5I GGATG 5 cut(s) 165, 670, 1345, 1358, 1755
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 4 cut(s) 135, 168, 360, 903
BstMAI GTCTC 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 141, 1832
BstNI CCWGG 2 cut(s) 839, 1301
BstNSI RCATGY 1 cut(s) 916
BstSCI CCNGG 2 cut(s) 837, 1299
BstSFI CTRYAG 6 cut(s) 342, 525, 940, 1107, 1377, 1756
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 1058, 1714, 1742
BstX2I RGATCY 3 cut(s) 752, 834, 1216
BstXI CCANNNNNNTGG 1 cut(s) 897
BstYI RGATCY 3 cut(s) 752, 834, 1216
Bsu15I ATCGAT 1 cut(s) 1311
BsuRI GGCC 4 cut(s) 89, 842, 946, 1709
BsuTUI ATCGAT 1 cut(s) 1311
BtgI CCRYGG 3 cut(s) 204, 253, 1362
BtsCI GGATG 5 cut(s) 165, 670, 1345, 1358, 1755
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 6 cut(s) 315, 643, 843, 1232, 1648, 1659
Cac8I GCNNGC 2 cut(s) 1790, 1824
CaiI CAGNNNCTG 1 cut(s) 141
CfoI GCGC 4 cut(s) 135, 168, 360, 903
Cfr13I GGNCC 4 cut(s) 87, 886, 945, 1717
ClaI ATCGAT 1 cut(s) 1311
Csp6I GTAC 2 cut(s) 433, 1029
CspCI CAANNNNNGTGG 2 cut(s) 1271, 1306
CviQI GTAC 2 cut(s) 433, 1029
DdeI CTNAG 7 cut(s) 51, 111, 729, 849, 1083, 1739, 1836
DraI TTTAAA 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 840
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 2 cut(s) 784, 1652
Eco130I CCWWGG 3 cut(s) 204, 1362, 1710
Eco24I GRGCYC 2 cut(s) 786, 1654
Eco32I GATATC 3 cut(s) 271, 1009, 1623
Eco47I GGWCC 2 cut(s) 886, 1717
Eco53kI GAGCTC 2 cut(s) 784, 1652
Eco57I CTGAAG 2 cut(s) 777, 1683
EcoICRI GAGCTC 2 cut(s) 784, 1652
EcoO109I RGGNCCY 2 cut(s) 886, 945
EcoRI GAATTC 2 cut(s) 1278, 1548
EcoRII CCWGG 2 cut(s) 837, 1299
EcoRV GATATC 3 cut(s) 271, 1009, 1623
EcoT14I CCWWGG 3 cut(s) 204, 1362, 1710
EcoT38I GRGCYC 2 cut(s) 786, 1654
ErhI CCWWGG 3 cut(s) 204, 1362, 1710
FauNDI CATATG 1 cut(s) 1330
FblI GTMKAC 1 cut(s) 1701
Fnu4HI GCNGC 5 cut(s) 29, 60, 1072, 1728, 1756
FokI GGATG 5 cut(s) 172, 677, 1345, 1352, 1762
FriOI GRGCYC 2 cut(s) 786, 1654
Fsp4HI GCNGC 5 cut(s) 29, 60, 1072, 1728, 1756
FspBI CTAG 3 cut(s) 750, 1043, 1214
GlaI GCGC 4 cut(s) 134, 167, 359, 902
GluI GCNGC 5 cut(s) 29, 60, 1072, 1728, 1756
GsaI CCCAGC 2 cut(s) 824, 1809
GsuI CTGGAG 1 cut(s) 542
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 4 cut(s) 89, 842, 946, 1709
HapII CCGG 1 cut(s) 76
HhaI GCGC 4 cut(s) 135, 168, 360, 903
Hin6I GCGC 4 cut(s) 133, 166, 358, 901
HinP1I GCGC 4 cut(s) 133, 166, 358, 901
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HpaII CCGG 1 cut(s) 76
HphI GGTGA 2 cut(s) 203, 269
Hpy166II GTNNAC 5 cut(s) 548, 579, 629, 1702, 1717
Hpy188I TCNGA 6 cut(s) 114, 159, 757, 852, 1509, 1740
Hpy8I GTNNAC 5 cut(s) 548, 579, 629, 1702, 1717
Hpy99I CGWCG 1 cut(s) 1497
HpyAV CCTTC 5 cut(s) 109, 752, 958, 1433, 1658
HpyCH4III ACNGT 8 cut(s) 647, 708, 813, 1097, 1161, 1227, 1497, 1643
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 1832
HpyF3I CTNAG 7 cut(s) 51, 111, 729, 849, 1083, 1739, 1836
HspAI GCGC 4 cut(s) 133, 166, 358, 901
KpnI GGTACC 1 cut(s) 1032
LmnI GCTCC 5 cut(s) 717, 789, 824, 1649, 1802
Lsp1109I GCAGC 3 cut(s) 1058, 1714, 1742
LweI GCATC 6 cut(s) 88, 964, 1330, 1380, 1526, 1677
MaeI CTAG 3 cut(s) 750, 1043, 1214
MboII GAAGA 4 cut(s) 690, 983, 1545, 1627
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 3 cut(s) 752, 834, 1216
MhlI GDGCHC 4 cut(s) 285, 786, 863, 1654
MlsI TGGCCA 1 cut(s) 842
MluNI TGGCCA 1 cut(s) 842
MlyI GAGTC 4 cut(s) 74, 1217, 1298, 1487
MmeI TCCRAC 1 cut(s) 960
Mox20I TGGCCA 1 cut(s) 842
MroXI GAANNNNTTC 3 cut(s) 380, 1278, 1548
MscI TGGCCA 1 cut(s) 842
MseI TTAA 4 cut(s) 389, 657, 771, 1565
MslI CAYNNNNRTG 4 cut(s) 158, 176, 895, 911
Msp20I TGGCCA 1 cut(s) 842
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 839, 1301
MunI CAATTG 1 cut(s) 828
Mva1269I GAATGC 2 cut(s) 112, 1352
MvaI CCWGG 2 cut(s) 839, 1301
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 141, 1832
NcoI CCATGG 2 cut(s) 204, 1362
NdeI CATATG 1 cut(s) 1330
NlaIV GGNNCC 7 cut(s) 9, 88, 292, 713, 888, 1030, 1117
NmuCI GTSAC 5 cut(s) 233, 813, 1209, 1479, 1657
NspI RCATGY 1 cut(s) 916
PctI GAATGC 2 cut(s) 112, 1352
PdmI GAANNNNTTC 3 cut(s) 380, 1278, 1548
PfeI GAWTC 6 cut(s) 138, 608, 722, 1153, 1504, 1676
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 5 cut(s) 30, 61, 1073, 1729, 1757
Ple19I CGATCG 1 cut(s) 298
PleI GAGTC 4 cut(s) 73, 1216, 1298, 1486
PpsI GAGTC 4 cut(s) 73, 1216, 1298, 1486
PpuMI RGGWCCY 1 cut(s) 886
Psp124BI GAGCTC 2 cut(s) 786, 1654
Psp5II RGGWCCY 1 cut(s) 886
Psp6I CCWGG 2 cut(s) 837, 1299
PspFI CCCAGC 2 cut(s) 820, 1805
PspGI CCWGG 2 cut(s) 837, 1299
PspN4I GGNNCC 7 cut(s) 9, 88, 292, 713, 888, 1030, 1117
PspPI GGNCC 4 cut(s) 87, 886, 945, 1717
PspPPI RGGWCCY 1 cut(s) 886
PstI CTGCAG 1 cut(s) 1760
PstNI CAGNNNCTG 1 cut(s) 141
PsuI RGATCY 3 cut(s) 752, 834, 1216
PvuI CGATCG 1 cut(s) 298
RsaI GTAC 2 cut(s) 434, 1030
RsaNI GTAC 2 cut(s) 433, 1029
RseI CAYNNNNRTG 4 cut(s) 158, 176, 895, 911
SacI GAGCTC 2 cut(s) 786, 1654
SaqAI TTAA 4 cut(s) 389, 657, 771, 1565
SatI GCNGC 5 cut(s) 29, 60, 1072, 1728, 1756
Sau96I GGNCC 4 cut(s) 87, 886, 945, 1717
SchI GAGTC 4 cut(s) 74, 1217, 1298, 1487
ScrFI CCNGG 2 cut(s) 839, 1301
SduI GDGCHC 4 cut(s) 285, 786, 863, 1654
SfaNI GCATC 6 cut(s) 88, 964, 1330, 1380, 1526, 1677
SfcI CTRYAG 6 cut(s) 342, 525, 940, 1107, 1377, 1756
SinI GGWCC 2 cut(s) 886, 1717
SmiMI CAYNNNNRTG 4 cut(s) 158, 176, 895, 911
SmlI CTYRAG 3 cut(s) 592, 1205, 1475
SmoI CTYRAG 3 cut(s) 592, 1205, 1475
SsiI CCGC 3 cut(s) 28, 59, 62
SspI AATATT 2 cut(s) 601, 796
SspMI CTAG 3 cut(s) 750, 1043, 1214
SstI GAGCTC 2 cut(s) 786, 1654
StyD4I CCNGG 2 cut(s) 837, 1299
StyI CCWWGG 3 cut(s) 204, 1362, 1710
TaaI ACNGT 8 cut(s) 647, 708, 813, 1097, 1161, 1227, 1497, 1643
TaqI TCGA 7 cut(s) 68, 174, 267, 279, 909, 1311, 1811
TauI GCSGC 2 cut(s) 31, 62
TfiI GAWTC 6 cut(s) 138, 608, 722, 1153, 1504, 1676
Tru1I TTAA 4 cut(s) 389, 657, 771, 1565
Tru9I TTAA 4 cut(s) 389, 657, 771, 1565
TscAI CASTG 6 cut(s) 322, 650, 850, 1232, 1648, 1666
TseFI GTSAC 5 cut(s) 233, 813, 1209, 1479, 1657
TseI GCWGC 3 cut(s) 1071, 1727, 1755
Tsp45I GTSAC 5 cut(s) 233, 813, 1209, 1479, 1657
TspDTI ATGAA 7 cut(s) 140, 296, 351, 444, 640, 1440, 1452
TspGWI ACGGA 2 cut(s) 33, 56
TspRI CASTG 6 cut(s) 322, 650, 850, 1232, 1648, 1666
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 886, 1717
XapI RAATTY 4 cut(s) 740, 1278, 1548, 1773
XceI RCATGY 1 cut(s) 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 1701
XmnI GAANNNNTTC 3 cut(s) 380, 1278, 1548
XspI CTAG 3 cut(s) 750, 1043, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.