Rmu_sc0012235.1_g000015

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012235.1
OG0000586
Physical Location & Seq
Forward (+)
49035 .. 51486
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012235.1_g000015.1.cds

Sequence Viewer

Length: 1677 bp
atgggggaaccctcaaacggagccgcccggagaggacggcggcgagactggacggagctacctgagaaagcggcggagtcgatattccggcgtctgggggccattgaggttttggagaatgctcagaaggtgtgcatgaagtggcgcagaatctgcaagaacaacactcggatgtggcgcaccatcgacatgagaaatgatggtgatctccaagccatggactacgacttggaggttatgtgccgtcacgccgttgatcgtagccgtggtgagctggtggatatcaatatcgagcacttcggcaccgatcggttgcttcattacatcactgatagggggatcagacgcctccgactattgtgttgcaatagcatatcagatgagggattgggaaaagtggctcagaaacttccattgttggaggaacttgacatttctctatgcggtaatatctcacatgaagctgtacaagtggttgggcgctcttgccctcttttgaaatcattcaaattaaacaaagagtggtgtatattctcaaatgatgagccttatgcgtaccattttggaagttggtattcatgtcattgttaccgagagaaacttacaccttttcctttcaaagacgattacaatggagttgcatttgctatagcaggaacaatgggtggtttacgccacctccagcttttcgggaataagttgacaaatgatggcttgagaaatattcttgattgttgtcctcatctttgttcacttgatctacgccactgtttcattcttaatctggatggagatttgggaagaatatgtgctgaacgaattgaaaaactgtggctgccacatgattctactgagggcaaagaatttgatgctagatctgaaggttactgctttaaatggacagagctcccagacaatattacaagatcaatactgtcacggctgggagcaattgagatcctggccactgctcagaaagtgtgctcaaagtggttctacatctgcaaggacccattgatgtggcgcaccatcgacatgcacaataagtttgatatttccaactacaggcccttctacttgcatgacttgtgtgaagatgccattgatcgtagctgtggtaatttggttgatatcaatgttgagaacttcggtaccaattttctcctagattatcttgcagagaggtcaagaggactcaaacgcctccgtttagtgggttctcatagaattacagacgagggattccgtaaagtggcttcaaaatttccaatgttggagcaccttgacattacattattcgaggatatctcacatgaaactctagcattggttgggcgatcatgccctcttttgaaatcattcaagtttaacaaacaatggttcagagatgactgctgcgataaggctgagcgtaatgactgtgcatttgctatagcaggaaccatgcacgggttacaccacctcatgcttttcaggaatcaactgtctaacaaaggtttgtctgcaattcttgatggctgtcctcatcttgagtcactagatctacgacagtgtttcaatcttaaattgtggggaaagacgggtagaaggtgtgctgaacgaattcaaaagttgtggcttccccaggactccatcgacgacattgacccatcatatgatctggatgctgaatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

558

Amino Acids

64.52

Weight (kDa)

6.68

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1151
AccB1I GGYRCC 2 cut(s) 302, 1151
AccB7I CCANNNNNTGG 1 cut(s) 217
AciI CCGC 5 cut(s) 24, 40, 71, 74, 444
AclWI GGATC 2 cut(s) 347, 952
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 3 cut(s) 863, 1262, 1602
AcuI CTGAAG 1 cut(s) 900
AcyI GRCGYC 2 cut(s) 91, 346
AfaI GTAC 3 cut(s) 468, 557, 1153
AfiI CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1065, 1213, 1252, 1449
AgsI TTSAA 9 cut(s) 499, 508, 619, 824, 1260, 1354, 1363, 1558, 1607
AjnI CCWGG 2 cut(s) 960, 1623
AluBI AGCT 6 cut(s) 58, 274, 464, 685, 907, 1113
AluI AGCT 6 cut(s) 58, 274, 464, 685, 907, 1113
Alw21I GWGCWC 4 cut(s) 297, 909, 986, 1281
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 347, 952
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 3 cut(s) 99, 963, 1067
ApeKI GCWGC 2 cut(s) 835, 1395
ApoI RAATTY 3 cut(s) 863, 1262, 1602
ArsI GACNNNNNNTTYG 2 cut(s) 1409, 1441
Asp700I GAANNNNTTC 3 cut(s) 503, 1358, 1602
Asp718I GGTACC 1 cut(s) 1151
AspLEI GCGC 4 cut(s) 147, 180, 483, 1026
AspS9I GGNCC 3 cut(s) 99, 1009, 1068
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 215, 281
AvaII GGWCC 1 cut(s) 1009
BaeI ACNNNNGTAYC 2 cut(s) 1135, 1168
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 2 cut(s) 302, 1151
BanII GRGCYC 1 cut(s) 909
BarI GAAGNNNNNNTAC 2 cut(s) 1240, 1272
Bbv12I GWGCWC 4 cut(s) 297, 909, 986, 1281
BbvI GCAGC 2 cut(s) 822, 1382
BccI CCATC 8 cut(s) 191, 194, 704, 782, 1037, 1508, 1640, 1657
BceAI ACGGC 5 cut(s) 53, 228, 236, 249, 956
BciT130I CCWGG 2 cut(s) 962, 1625
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 4 cut(s) 873, 1166, 1322, 1538
BfmI CTRYAG 3 cut(s) 648, 1063, 1431
BfoI RGCGCY 1 cut(s) 484
BglII AGATCT 2 cut(s) 875, 1540
BisI GCNGC 5 cut(s) 24, 41, 72, 836, 1396
BlpI GCTNAGC 1 cut(s) 1407
BlsI GCNGC 5 cut(s) 25, 42, 73, 837, 1397
Bme1390I CCNGG 3 cut(s) 28, 962, 1625
Bme18I GGWCC 1 cut(s) 1009
BmgT120I GGNCC 3 cut(s) 99, 1009, 1068
BmiI GGNNCC 7 cut(s) 9, 22, 100, 304, 1011, 1153, 1441
BmrFI CCNGG 3 cut(s) 28, 962, 1625
BmsI GCATC 3 cut(s) 859, 1087, 1654
BplI GAGNNNNNCTC 2 cut(s) 1292, 1324
BpmI CTGGAG 1 cut(s) 665
Bpu1102I GCTNAGC 1 cut(s) 1407
BpuEI CTTGAG 2 cut(s) 736, 1550
BpuMI CCSGG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 2 cut(s) 91, 346
BsaJI CCNNGG 3 cut(s) 216, 265, 1623
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 663, 693
Bsc4I CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1065, 1213, 1252, 1449
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 962, 1625
BseDI CCNNGG 3 cut(s) 216, 265, 1623
BseGI GGATG 3 cut(s) 177, 793, 1669
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1065, 1213, 1252, 1449
BseMII CTCAG 6 cut(s) 54, 137, 416, 843, 986, 1398
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 822, 1382
BseYI CCCAGC 1 cut(s) 943
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 101, 965, 1069
BshNI GGYRCC 2 cut(s) 302, 1151
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 4 cut(s) 297, 909, 986, 1281
BsiSI CCGG 2 cut(s) 28, 88
BslI CCNNNNNNNGG 7 cut(s) 17, 94, 217, 1065, 1213, 1252, 1449
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 3 cut(s) 101, 965, 1069
Bsp1286I GDGCHC 4 cut(s) 297, 909, 986, 1281
Bsp1407I TGTACA 1 cut(s) 466
Bsp1720I GCTNAGC 1 cut(s) 1407
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 5 cut(s) 24, 40, 71, 74, 444
BspANI GGCC 3 cut(s) 101, 965, 1069
BspCNI CTCAG 6 cut(s) 55, 136, 415, 844, 985, 1399
BspLI GGNNCC 7 cut(s) 9, 22, 100, 304, 1011, 1153, 1441
BspPI GGATC 2 cut(s) 347, 952
BspT107I GGYRCC 2 cut(s) 302, 1151
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 216, 265, 1623
BssNI GRCGYC 2 cut(s) 91, 346
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 962, 1625
Bst4CI ACNGT 6 cut(s) 770, 831, 936, 1421, 1485, 1551
BstACI GRCGYC 2 cut(s) 91, 346
BstAPI GCANNNNNTGC 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 466
BstDEI CTNAG 6 cut(s) 63, 123, 402, 852, 972, 1407
BstDSI CCRYGG 2 cut(s) 216, 265
BstF5I GGATG 3 cut(s) 177, 793, 1669
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 4 cut(s) 147, 180, 483, 1026
BstMAI GTCTC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 2 cut(s) 962, 1625
BstNSI RCATGY 1 cut(s) 1039
BstSCI CCNGG 3 cut(s) 26, 960, 1623
BstSFI CTRYAG 3 cut(s) 648, 1063, 1431
BstV1I GCAGC 2 cut(s) 822, 1382
BstX2I RGATCY 3 cut(s) 875, 957, 1540
BstXI CCANNNNNNTGG 1 cut(s) 1020
BstYI RGATCY 3 cut(s) 875, 957, 1540
BsuRI GGCC 3 cut(s) 101, 965, 1069
BtgI CCRYGG 2 cut(s) 216, 265
BtsCI GGATG 3 cut(s) 177, 793, 1669
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 4 cut(s) 327, 766, 966, 1556
CaiI CAGNNNCTG 1 cut(s) 153
CfoI GCGC 4 cut(s) 147, 180, 483, 1026
Cfr13I GGNCC 3 cut(s) 99, 1009, 1068
CseI GACGC 2 cut(s) 80, 354
Csp6I GTAC 3 cut(s) 467, 556, 1152
CspCI CAANNNNNGTGG 2 cut(s) 1595, 1630
CviQI GTAC 3 cut(s) 467, 556, 1152
DdeI CTNAG 6 cut(s) 63, 123, 402, 852, 972, 1407
DraI TTTAAA 1 cut(s) 895
EaeI YGGCCR 1 cut(s) 963
EciI GGCGGA 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 909
Eco32I GATATC 3 cut(s) 283, 1132, 1306
Eco47I GGWCC 1 cut(s) 1009
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 900
EcoICRI GAGCTC 1 cut(s) 907
EcoO109I RGGNCCY 2 cut(s) 1009, 1068
EcoRI GAATTC 1 cut(s) 1602
EcoRII CCWGG 2 cut(s) 960, 1623
EcoRV GATATC 3 cut(s) 283, 1132, 1306
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 1 cut(s) 216
FauNDI CATATG 1 cut(s) 1654
Fnu4HI GCNGC 5 cut(s) 24, 41, 72, 836, 1396
FokI GGATG 2 cut(s) 184, 800
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 5 cut(s) 24, 41, 72, 836, 1396
FspBI CTAG 4 cut(s) 873, 1166, 1322, 1538
GlaI GCGC 4 cut(s) 146, 179, 482, 1025
GluI GCNGC 5 cut(s) 24, 41, 72, 836, 1396
GsaI CCCAGC 1 cut(s) 947
GsuI CTGGAG 1 cut(s) 665
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 3 cut(s) 101, 965, 1069
HapII CCGG 2 cut(s) 28, 88
HgaI GACGC 2 cut(s) 80, 354
HhaI GCGC 4 cut(s) 147, 180, 483, 1026
Hin1I GRCGYC 2 cut(s) 91, 346
Hin6I GCGC 4 cut(s) 145, 178, 481, 1024
HinP1I GCGC 4 cut(s) 145, 178, 481, 1024
HincII GTYRAC 1 cut(s) 702
HindII GTYRAC 1 cut(s) 702
HinfI GANTC 8 cut(s) 77, 150, 845, 1194, 1242, 1477, 1532, 1628
HpaII CCGG 2 cut(s) 28, 88
HphI GGTGA 2 cut(s) 215, 281
Hpy166II GTNNAC 3 cut(s) 671, 702, 752
Hpy188I TCNGA 9 cut(s) 126, 171, 344, 353, 379, 405, 880, 975, 1385
Hpy188III TCNNGA 8 cut(s) 691, 728, 785, 1188, 1474, 1511, 1529, 1661
Hpy8I GTNNAC 3 cut(s) 671, 702, 752
Hpy99I CGWCG 1 cut(s) 1640
HpyAV CCTTC 4 cut(s) 121, 875, 1081, 1581
HpyCH4III ACNGT 6 cut(s) 770, 831, 936, 1421, 1485, 1551
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 6 cut(s) 63, 123, 402, 852, 972, 1407
Hsp92I GRCGYC 2 cut(s) 91, 346
HspAI GCGC 4 cut(s) 145, 178, 481, 1024
KpnI GGTACC 1 cut(s) 1155
LmnI GCTCC 5 cut(s) 20, 55, 912, 947, 1276
Lsp1109I GCAGC 2 cut(s) 822, 1382
LweI GCATC 3 cut(s) 859, 1087, 1654
MaeI CTAG 4 cut(s) 873, 1166, 1322, 1538
MaeIII GTNAC 6 cut(s) 245, 587, 884, 936, 1452, 1533
MboII GAAGA 2 cut(s) 813, 1106
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 3 cut(s) 875, 957, 1540
MhlI GDGCHC 4 cut(s) 297, 909, 986, 1281
MlsI TGGCCA 1 cut(s) 965
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 4 cut(s) 86, 1188, 1541, 1622
MmeI TCCRAC 4 cut(s) 376, 399, 1083, 1254
Mox20I TGGCCA 1 cut(s) 965
MroXI GAANNNNTTC 3 cut(s) 503, 1358, 1602
MscI TGGCCA 1 cut(s) 965
MseI TTAA 5 cut(s) 512, 780, 894, 1368, 1563
MslI CAYNNNNRTG 4 cut(s) 170, 188, 1018, 1034
Msp20I TGGCCA 1 cut(s) 965
MspI CCGG 2 cut(s) 28, 88
MspR9I CCNGG 3 cut(s) 28, 962, 1625
MunI CAATTG 1 cut(s) 951
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 962, 1625
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 1654
NlaIV GGNNCC 7 cut(s) 9, 22, 100, 304, 1011, 1153, 1441
NmuCI GTSAC 3 cut(s) 245, 936, 1533
NspI RCATGY 1 cut(s) 1039
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 3 cut(s) 503, 1358, 1602
PfeI GAWTC 4 cut(s) 150, 845, 1242, 1477
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 5 cut(s) 25, 42, 73, 837, 1397
Ple19I CGATCG 1 cut(s) 310
PleI GAGTC 4 cut(s) 85, 1188, 1540, 1622
PpsI GAGTC 4 cut(s) 85, 1188, 1540, 1622
PpuMI RGGWCCY 1 cut(s) 1009
Psp124BI GAGCTC 1 cut(s) 909
Psp5II RGGWCCY 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 960, 1623
PspFI CCCAGC 1 cut(s) 943
PspGI CCWGG 2 cut(s) 960, 1623
PspN4I GGNNCC 7 cut(s) 9, 22, 100, 304, 1011, 1153, 1441
PspPI GGNCC 3 cut(s) 99, 1009, 1068
PspPPI RGGWCCY 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 3 cut(s) 875, 957, 1540
PvuI CGATCG 1 cut(s) 310
RsaI GTAC 3 cut(s) 468, 557, 1153
RsaNI GTAC 3 cut(s) 467, 556, 1152
RseI CAYNNNNRTG 4 cut(s) 170, 188, 1018, 1034
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 5 cut(s) 512, 780, 894, 1368, 1563
SatI GCNGC 5 cut(s) 24, 41, 72, 836, 1396
Sau96I GGNCC 3 cut(s) 99, 1009, 1068
SchI GAGTC 4 cut(s) 86, 1188, 1541, 1622
ScrFI CCNGG 3 cut(s) 28, 962, 1625
SduI GDGCHC 4 cut(s) 297, 909, 986, 1281
SfaNI GCATC 3 cut(s) 859, 1087, 1654
SfcI CTRYAG 3 cut(s) 648, 1063, 1431
SinI GGWCC 1 cut(s) 1009
SmiMI CAYNNNNRTG 4 cut(s) 170, 188, 1018, 1034
SmlI CTYRAG 2 cut(s) 715, 1529
SmoI CTYRAG 2 cut(s) 715, 1529
SsiI CCGC 5 cut(s) 24, 40, 71, 74, 444
SspI AATATT 2 cut(s) 724, 919
SspMI CTAG 4 cut(s) 873, 1166, 1322, 1538
SstI GAGCTC 1 cut(s) 909
StyD4I CCNGG 3 cut(s) 26, 960, 1623
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 6 cut(s) 770, 831, 936, 1421, 1485, 1551
TaqI TCGA 6 cut(s) 80, 186, 291, 1032, 1299, 1635
TatI WGTACW 1 cut(s) 466
TauI GCSGC 3 cut(s) 26, 43, 74
TfiI GAWTC 4 cut(s) 150, 845, 1242, 1477
Tru1I TTAA 5 cut(s) 512, 780, 894, 1368, 1563
Tru9I TTAA 5 cut(s) 512, 780, 894, 1368, 1563
TscAI CASTG 4 cut(s) 334, 773, 973, 1556
TseFI GTSAC 3 cut(s) 245, 936, 1533
TseI GCWGC 2 cut(s) 835, 1395
Tsp45I GTSAC 3 cut(s) 245, 936, 1533
TspDTI ATGAA 6 cut(s) 152, 308, 474, 567, 763, 1329
TspGWI ACGGA 4 cut(s) 33, 68, 1196, 1235
TspRI CASTG 4 cut(s) 334, 773, 973, 1556
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 1009
XapI RAATTY 3 cut(s) 863, 1262, 1602
XceI RCATGY 1 cut(s) 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmnI GAANNNNTTC 3 cut(s) 503, 1358, 1602
XspI CTAG 4 cut(s) 873, 1166, 1322, 1538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.