Rorug06G0384600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000586
Physical Location & Seq
Reverse (-)
53028140 .. 53028625
486 bp
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UTR
Exon/CDS
Intron
Rorug06G0384600.1

Sequence Viewer

Length: 372 bp
ATGGCAGCTATAATGAAATTTCTCTTCATTGCCATCCTTTGCAGCCTCATTATGGGAGGCGATTGTCAACCTTGCTCTGAGAAGAATTTGATTATTATACAGTCAGCAACGGGAAAGTTGGTTCAAAATAAGCCAGAATGGAATGTAAAGATCACTAACAACTGCATTTGTTCTCAATTGAGTGTTAAGCTGAGTTGTGATGGCTTTCAAACTGTGGAAGAGATTGATCCTACAATCTTGAGCAAATCTGGTAGCTTGTGTCTTGTCAACAGTGGCGAACCTATCTATGGGCATAGCAATTTCAGTTTCACCTATGCGTGGAGCAATTCGTTTCCTTTCAAAACGCTGTTCTCTCAAGCTGCTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

123

Amino Acids

13.43

Weight (kDa)

6.52

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 27 - 122 8.6e-31 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 2 cut(s) 17, 85
AfiI CCNNNNNNNGG 3 cut(s) 52, 287, 318
AgsI TTSAA 3 cut(s) 125, 209, 340
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 4 cut(s) 8, 190, 255, 359
AluI AGCT 4 cut(s) 8, 190, 255, 359
AlwI GGATC 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 5, 42, 359
ApoI RAATTY 2 cut(s) 17, 85
AsuHPI GGTGA 1 cut(s) 301
BbvI GCAGC 3 cut(s) 17, 54, 346
BccI CCATC 2 cut(s) 41, 194
BisI GCNGC 3 cut(s) 6, 43, 360
BlsI GCNGC 3 cut(s) 7, 44, 361
BpuEI CTTGAG 2 cut(s) 259, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 287, 318
Bse3DI GCAATG 1 cut(s) 27
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 3 cut(s) 52, 287, 318
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 69, 182
BseXI GCAGC 3 cut(s) 17, 54, 346
BslI CCNNNNNNNGG 3 cut(s) 52, 287, 318
Bsp143I GATC 2 cut(s) 150, 226
BspCNI CTCAG 2 cut(s) 70, 183
BspPI GGATC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 27
BssMI GATC 2 cut(s) 150, 226
Bst4CI ACNGT 3 cut(s) 102, 214, 272
Bst6I CTCTTC 2 cut(s) 29, 213
BstDEI CTNAG 2 cut(s) 78, 191
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 2 cut(s) 153, 229
BstMBI GATC 2 cut(s) 150, 226
BstV1I GCAGC 3 cut(s) 17, 54, 346
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 277
CviJI RGCY 7 cut(s) 8, 45, 133, 190, 204, 255, 359
CviKI_1 RGCY 7 cut(s) 8, 45, 133, 190, 204, 255, 359
DdeI CTNAG 2 cut(s) 78, 191
DpnI GATC 2 cut(s) 152, 228
DpnII GATC 2 cut(s) 150, 226
Eam1104I CTCTTC 2 cut(s) 29, 213
EarI CTCTTC 2 cut(s) 29, 213
FaiI YATR 6 cut(s) 11, 53, 98, 288, 294, 315
Fnu4HI GCNGC 3 cut(s) 6, 43, 360
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 6, 43, 360
GluI GCNGC 3 cut(s) 6, 43, 360
HincII GTYRAC 2 cut(s) 68, 268
HindII GTYRAC 2 cut(s) 68, 268
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 68, 268
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 238, 369
Hpy8I GTNNAC 2 cut(s) 68, 268
HpyCH4III ACNGT 3 cut(s) 102, 214, 272
HpyCH4V TGCA 2 cut(s) 42, 165
HpyF3I CTNAG 2 cut(s) 78, 191
Kzo9I GATC 2 cut(s) 150, 226
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 2 cut(s) 147, 234
Lsp1109I GCAGC 3 cut(s) 17, 54, 346
MalI GATC 2 cut(s) 152, 228
MboI GATC 2 cut(s) 150, 226
MboII GAAGA 3 cut(s) 16, 94, 230
MfeI CAATTG 1 cut(s) 176
MluCI AATT 5 cut(s) 17, 85, 176, 298, 325
MnlI CCTC 2 cut(s) 50, 56
MseI TTAA 1 cut(s) 186
MunI CAATTG 1 cut(s) 176
NdeII GATC 2 cut(s) 150, 226
PkrI GCNGC 3 cut(s) 7, 44, 361
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 3 cut(s) 6, 43, 360
Sau3AI GATC 2 cut(s) 150, 226
SetI ASST 7 cut(s) 10, 73, 192, 257, 283, 314, 361
SgeI CNNG 9 cut(s) 84, 123, 146, 250, 261, 268, 275, 330, 368
SmlI CTYRAG 2 cut(s) 238, 354
SmoI CTYRAG 2 cut(s) 238, 354
Sse9I AATT 5 cut(s) 17, 85, 176, 298, 325
TaaI ACNGT 3 cut(s) 102, 214, 272
TasI AATT 5 cut(s) 17, 85, 176, 298, 325
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 277
TseI GCWGC 3 cut(s) 5, 42, 359
TspDTI ATGAA 2 cut(s) 16, 29
TspRI CASTG 1 cut(s) 277
XapI RAATTY 2 cut(s) 17, 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.