Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8003450.1

Orthogroup ID

OG0000586

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 508

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8003450.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 508 bp

ttgtcctcatctttgttcacttgatctacgccactgtttcattcttaatctggatggagatttgggaagaatatgtgctgaacgaattgaaaaactgtggctgccacatgattctactgagggcaaagaatttgatgctagatctgaaggttactgctttaaatggacagagctcccagacaatattacaagatcaatactgtcacggctgggagcaattgagatcctggccactgctcagaaagtgtgctcaaagtggttctacatctgcaaggacccattgatgtggcgcaccatcgacatgcacaataagtttgatatttccaactacaggcccttctacttgcatgacttgtgtgaagatgccattgatcgtagctgtggtaatttggttgatatcaatgttgagaacttcggtaccaattttctcctagattatcttgcagagaggtatatcattctcactcatactaaaattcagatccttaatacttatcataatccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

168

Amino Acids

19.69

Weight (kDa)

5.6

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52480 AT5G52480
fragaria_vesca	FvH4_2g31840 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09551 FvH4_3g09561 FvH4_3g09610 FvH4_3g09610 FvH4_3g09620 FvH4_3g38210 FvH4_3g38220 FvH4_3g38230 FvH4_3g38230
malus_domestica	MD05G1276400.v1.1
pyrus_communis	pycom05g25740
rosa_chinensis	RchiOBHm_Chr5g0015221 RchiOBHm_Chr5g0015271 RchiOBHm_Chr5g0015281 RchiOBHm_Chr5g0015311 RchiOBHm_Chr6g0310961 RchiOBHm_Chr6g0310971
rosa_laevigata	RLG00000010445 RLG00000032177 RLG00000032184 RLG00000032187 RLG00000032191
rosa_multiflora	Rmu_co8003450.1_g000001 Rmu_co8369503.1_g000001 Rmu_sc0000658.1_g000011 Rmu_sc0002209.1_g000022 Rmu_sc0012235.1_g000015
rosa_roxburghii	Rroxscaffold_1G00061150 Rroxscaffold_1G00061160 Rroxscaffold_1G00061190 Rroxscaffold_1G00061220 Rroxscaffold_1G00061350 Rroxscaffold_7G00158130 Rroxscaffold_7G00158140
rosa_rugosa	Rorug05G0024700 Rorug05G0025500 Rorug05G0025700 Rorug05G0025800 Rorug05G0025900 Rorug05G0026300 Rorug05G0026400 Rorug05G0026600.1 Rorug06G0384500 Rorug06G0384600 Rorug06G0384700
rosa_samantha	Rh5BG117300 Rh5BG117900 Rh5BG118100 Rh5BG118500 Rh5BG118700 Rh5BG118800 Rh5BG118900 Rh5CG128400 Rh5CG129000 Rh5CG129200 Rh5CG129400 Rh5DG116400 Rh5DG117200 Rh5DG117500 Rh5DG117700 Rh5DG117800 Rh6AG498200 Rh6AG498300 Rh6CG514500 Rh6CG514600 Rh6CG514700 Rh6DG501000 Rh6DG501100 Rh6DG501200
rosa_wichuraiana	Rw5G010300 Rw5G010330 Rw5G010350 Rw5G010360 Rw6G043390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	218, 476
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	129, 475
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	173, 379
AluI	AGCT	2 cut(s)	173, 379
Alw21I	GWGCWC	2 cut(s)	175, 252
AlwI	GGATC	2 cut(s)	218, 476
AoxI	GGCC	2 cut(s)	229, 333
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	129, 475
Asp718I	GGTACC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	275, 334
AvaII	GGWCC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	175, 252
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	48, 303
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	228
BfaI	CTAG	2 cut(s)	139, 432
BfmI	CTRYAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	275, 334
BmiI	GGNNCC	2 cut(s)	277, 419
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	125, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	109, 252
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	231, 335
BshNI	GGYRCC	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	175, 252
BslI	CCNNNNNNNGG	1 cut(s)	331
BsnI	GGCC	2 cut(s)	231, 335
Bsp1286I	GDGCHC	2 cut(s)	175, 252
Bsp143I	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
BspANI	GGCC	2 cut(s)	231, 335
BspCNI	CTCAG	2 cut(s)	110, 251
BspLI	GGNNCC	2 cut(s)	277, 419
BspPI	GGATC	2 cut(s)	218, 476
BspT107I	GGYRCC	1 cut(s)	417
BssMI	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	36, 97, 202
BstDEI	CTNAG	2 cut(s)	118, 238
BstF5I	GGATG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	6 cut(s)	26, 144, 195, 226, 374, 484
BstMBI	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	3 cut(s)	141, 223, 481
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	3 cut(s)	141, 223, 481
BsuRI	GGCC	2 cut(s)	231, 335
BtsCI	GGATG	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	32, 232
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	275, 334
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	3 cut(s)	108, 302, 348
CviJI	RGCY	6 cut(s)	101, 173, 209, 231, 335, 379
CviKI_1	RGCY	6 cut(s)	101, 173, 209, 231, 335, 379
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	118, 238
DpnI	GATC	6 cut(s)	25, 143, 194, 225, 373, 483
DpnII	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
DraI	TTTAAA	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	173
EcoO109I	RGGNCCY	2 cut(s)	275, 334
EcoRII	CCWGG	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	3 cut(s)	111, 305, 351
FaiI	YATR	7 cut(s)	74, 109, 303, 349, 454, 469, 499
FatI	CATG	3 cut(s)	107, 301, 347
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	2 cut(s)	139, 432
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	231, 335
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	111, 305, 351
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	146, 241, 481
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	141, 347
HpyCH4III	ACNGT	3 cut(s)	36, 97, 202
HpyCH4V	TGCA	4 cut(s)	271, 305, 347, 444
HpyF3I	CTNAG	2 cut(s)	118, 238
Hsp92II	CATG	3 cut(s)	111, 305, 351
HspAI	GCGC	1 cut(s)	290
KpnI	GGTACC	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
LmnI	GCTCC	2 cut(s)	178, 213
LpnPI	CCDG	6 cut(s)	36, 190, 195, 213, 240, 317
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	125, 353
MaeI	CTAG	2 cut(s)	139, 432
MaeIII	GTNAC	2 cut(s)	150, 202
MalI	GATC	6 cut(s)	25, 143, 194, 225, 373, 483
MboI	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
MboII	GAAGA	2 cut(s)	79, 372
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	3 cut(s)	141, 223, 481
MhlI	GDGCHC	2 cut(s)	175, 252
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	6 cut(s)	85, 129, 217, 386, 422, 475
MluNI	TGGCCA	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	3 cut(s)	16, 113, 442
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	3 cut(s)	46, 160, 487
MslI	CAYNNNNRTG	2 cut(s)	284, 300
Msp20I	TGGCCA	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	228
NdeII	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
NlaIII	CATG	3 cut(s)	111, 305, 351
NlaIV	GGNNCC	2 cut(s)	277, 419
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	277, 419
PspPI	GGNCC	2 cut(s)	275, 334
PspPPI	RGGWCCY	1 cut(s)	275
PsuI	RGATCY	3 cut(s)	141, 223, 481
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	2 cut(s)	284, 300
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	3 cut(s)	46, 160, 487
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	6 cut(s)	23, 141, 192, 223, 371, 481
Sau96I	GGNCC	2 cut(s)	275, 334
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	175, 252
SetI	ASST	4 cut(s)	152, 175, 381, 453
SfaNI	GCATC	2 cut(s)	125, 353
SfcI	CTRYAG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	284, 300
Sse9I	AATT	6 cut(s)	85, 129, 217, 386, 422, 475
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	139, 432
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	36, 97, 202
TaqI	TCGA	1 cut(s)	298
TasI	AATT	6 cut(s)	85, 129, 217, 386, 422, 475
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	3 cut(s)	46, 160, 487
Tru9I	TTAA	3 cut(s)	46, 160, 487
TscAI	CASTG	2 cut(s)	39, 239
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	2 cut(s)	39, 239
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	129, 475
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	2 cut(s)	139, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.