Rorug06G0384500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000331
Physical Location & Seq
Reverse (-)
52994696 .. 52998025
3330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384500.1

Sequence Viewer

Length: 2721 bp
ATGGCCCTCAACCCAGACAAGACCGGAATCCCACGAGAAAAAACAATCACTCTGTCCTCACTTATGGCGCCCAGGTTGGCCCGAAGAGGCGGCGTTGATGATCCCTTTGCATGGTACAGCAGAGAGTTTCTGAGGCAGCTCTGCTTAGGAGAGGAGGTTGTCTTCAAGGTGGACTATGTTATAAAATCCATAGACCGGGATTTCGGTTCTGTCTTCCTTGCCAAGAGCAACGATAATGTCGCAAAGGTTGTTGTTTCTCAAGGCTGGGCAAAGGTCAGGGAGCCACAGAGTCAGCCAACAGGTCCGAGACAGGGACAACAGAAACAGATAGTAGAAGTTAGTCCTTACCTTGAAGAACTTCTTAGCCTCGAAGAGAAAGCAAAGACTGAAGGTCTTGGTTGCTGGACCAAGGTTCCGGGTGCTGCTGAGGAATCTATTAGGTGTCTACCTCCCAACAACAACTTTGATGCAATGAGTCTGTTAGCAGAAAACAAGGGCCAGCCCATGGAGGCTATTGTGGAGCAAGTTCGTGATGGCAGCACATTGGGGGTTTACTTGCTTCCGGAGTTTCAGTTTGTCCATGTATTCGTTGCAGGAACTCGGGCCCCCTCCATGAAAAGGAGCCATGGAACAAAAGAAACTGTCGCAGTTGCTGAAGCGTTTGCATTGGAATCTAAATTCTTTACAGAAGCTCGTGTGTTGAACAGGGATGTACATATTGTTCTGCAAGGTGTTGACAAGTTCAGAAATTTGAATCATTTGATTGGGTCAGTGTATTACCCCGATGGAGAATCCGAAAAGGACTTGGGGCTGGAGCTTGTGGAGAATGGTTATGCAAAATATGTCGAATGGAGTGCAAACCTGATGGAGGAAGATGCAAAGAAACAGCTCAAGGCTGCAGAGCTTGAAGCTAAGAAAAGCAAGTTGAGGATGTGGACAAATTACGTACCCCCAGCTACAGGTTCAAAGCCAATTCATGACAAGAATTTCACAGGAAAGGTTGTGGAGGTTGTGAGTGGGGACTGCATCATTGTGGCTGATGATTCTCTTCCATCTGGCAGTCCACTAGCAGAGAGGAGAGTCAATCTTTCTAGTATTTGGTGTCCGAAGATGCACAATCCTCGTAGAGATGAAAAGCCGGCTCCATATGCACGCGAAGCAAAGGAGTTGCTGAGGACACGCCTTATTGGTAGCCAAGTGAGTGTTCAATTGGAGTATTCTAGGAAGGTTGGCCAAGGAGATGCAATGGATTTTGGATCAGTCTTTGTGAAGGCTGTGGAGAAAGATGCAAGTGGGCAGGTTGGGGGGAATGTTGCTGAGCTCATGGTTGCACGTGGCCTTGGCACCGTTGTTAAACATCGAGATTTTGAGGAGAGATCGCACTATTATGATGCTCTTCTTGCTGCTGAGTCGCGTGCTATTGCCGGCAAGAAAGGAATACATTCTTCCAAGGAAGCCCCAGTCATGCACACAAGAGACTTGACAACTGAACCTGCCAAGAAAGCAAGCGAGTTCTTGCCGTTCTTGCAGCGAAATAGGAAAATTCCTGCCATTGTGGAATATGTCCTTAGTGGTCATCGTTTTAAGCTATTTCTTCCCAAGGAAACATGCAGCATTTCCTTCTCTTTCTCAGGTGTGAGATGTCCCCGTCGTGAGGAGCCCTTTTCGGATGAAGCAATTGCAGTCATGAGGCGAAGAATAATGCAGAGAGAAGTTGAGATTGAGGTGGAGAGTGTTGACAAAACTGGAACTTTCTTGGGAACTTTATGGGAATCGGGGACCAATATGTCAATTGCTCTCGTTGGAGCTGGCCTTGCAAAATATACTCCCTTTGGCAACAGCGATAGGATTCTGGATGCTCACCTTCTTGAACAAGCTCAAAAATCTGCCAAACAGCAGAAATTGAAAATCTGGGAGAAGTATGATCAAGGACAGGAAGTTTCCAAGAAACAGAAAAAGGTGCTAAATGTTGTAGTTACAGAGATTTTGGACAGCGGTAAATTTTATGTTCAGACAACTGAGGACCAAAACACTGCCTCTATTCAGCAACAGCTTGCTTCTTTGAATCTTCAAGAATCTGATCCTGTAACCGATACTGATTTCAAGCCTAAGAAGGGAGACATTGTCCTTGCTCAGTTTAGTGCAGACAATTCTTGGAACCGTGCAATGATTATCAATGCTCCTAGAGCAGCTGTAGAATCCTCTCAAGACGAGTATGAAGTGTTCTACATTGATTACGGTAATCAAGAGGTTGTCCCTTTCAGTCAGTTACGGCCTCTCGACTCTTCTCTTGCCACTGCACCTGGCCTCGCCCAACTGTGCAGCCTTGCATATGTTAAGGTCCCAAGCTTGGAGGATAATTTTGGTGAAGAAGCAGCAGAGTTCTTGAGTGAGCAAACATTGAGCAGTTCCATAAAGTTCAGGGCCTTGATTGAGGGAAGGGATCTTTCAGAAGGAAAAGTTGTTAAAGGGCAGGGAACCGGACCAGTTCTTATGGTAACTCTTGAGGCAGGTGATGATGAGATGAGTATAAATGCTGCCATGGTTCGAGAGGGACTTGCTAGCCTGGACAAAGAGAAGAAATTTTGGAAGTCTTCCGAAACCTTGAGAGAGTTCCAGGAAGAAGCAAGGACCTATCGGCGAGGCATGTGGGAAGATGGAGATATTTATGCTCATGTGGACAGGGCTCGTCCCATTACAAGGACTGCTGGCAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

906

Amino Acids

100.99

Weight (kDa)

6.15

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNase PF00565 201 - 313 9.8e-12 Staphylococcal nuclease homologue
SNase PF00565 360 - 481 1.5e-06 Staphylococcal nuclease homologue
SNase PF00565 541 - 639 3.6e-15 Staphylococcal nuclease homologue
TUDOR PF00567 652 - 777 1.3e-23 Tudor domain
SNase PF00565 784 - 886 3.2e-08 Staphylococcal nuclease homologue
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AarI CACCTGC 1 cut(s) 2501
AasI GACNNNNNNGTC 1 cut(s) 1786
Acc36I ACCTGC 3 cut(s) 1288, 1501, 2501
AccB1I GGYRCC 2 cut(s) 67, 1343
AccB7I CCANNNNNTGG 1 cut(s) 505
AccI GTMKAC 1 cut(s) 445
AccII CGCG 2 cut(s) 1155, 1414
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 2 cut(s) 90, 1995
AclWI GGATC 4 cut(s) 95, 1264, 2075, 2451
AcoI YGGCCR 1 cut(s) 1231
AcsI RAATTY 6 cut(s) 677, 748, 985, 1542, 2000, 2582
AcuI CTGAAG 2 cut(s) 408, 675
AcvI CACGTG 1 cut(s) 1334
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 3 cut(s) 116, 714, 948
AhdI GACNNNNNGTC 1 cut(s) 390
AjnI CCWGG 4 cut(s) 71, 2302, 2565, 2616
AjuI GAANNNNNNNTTGG 2 cut(s) 1188, 1220
Alw21I GWGCWC 1 cut(s) 1323
Alw26I GTCTC 3 cut(s) 301, 1470, 2112
AlwI GGATC 4 cut(s) 95, 1264, 2075, 2451
AlwNI CAGNNNCTG 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 600
Aor13HI TCCGGA 1 cut(s) 562
ApaI GGGCCC 1 cut(s) 607
ApoI RAATTY 6 cut(s) 677, 748, 985, 1542, 2000, 2582
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 2 cut(s) 357, 1441
AspLEI GCGC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 197, 417
AsuHPI GGTGA 3 cut(s) 1853, 2378, 2525
AsuNHI GCTAGC 1 cut(s) 2561
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 7 cut(s) 302, 405, 1779, 2023, 2341, 2483, 2631
BaeGI GKGCMC 1 cut(s) 607
BalI TGGCCA 1 cut(s) 1233
BanI GGYRCC 2 cut(s) 67, 1343
BanII GRGCYC 4 cut(s) 607, 1323, 1662, 2689
BauI CACGAG 2 cut(s) 33, 693
BbrPI CACGTG 1 cut(s) 1334
BbsI GAAGAC 3 cut(s) 154, 205, 2586
Bbv12I GWGCWC 1 cut(s) 1323
BbvCI CCTCAGC 2 cut(s) 426, 1172
BccI CCATC 5 cut(s) 527, 779, 859, 1060, 2651
BceAI ACGGC 2 cut(s) 1504, 2288
BcgI CGANNNNNNTGC 4 cut(s) 836, 870, 1103, 1137
BciT130I CCWGG 4 cut(s) 73, 2304, 2567, 2618
BclI TGATCA 1 cut(s) 1924
BcnI CCSGG 2 cut(s) 197, 417
BcoDI GTCTC 3 cut(s) 301, 1470, 2112
BfaI CTAG 5 cut(s) 1067, 1092, 1221, 2184, 2562
BfmI CTRYAG 3 cut(s) 897, 957, 2193
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 3 cut(s) 1288, 1501, 2501
BlpI GCTNAGC 1 cut(s) 1317
Bme1390I CCNGG 6 cut(s) 73, 197, 417, 2304, 2567, 2618
Bme18I GGWCC 7 cut(s) 302, 405, 1779, 2023, 2341, 2483, 2631
BmeRI GACNNNNNGTC 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 600
BmrFI CCNGG 6 cut(s) 73, 197, 417, 2304, 2567, 2618
BmrI ACTGGG 1 cut(s) 1454
BmsI GCATC 8 cut(s) 457, 865, 1035, 1101, 1231, 1276, 1381, 1846
BmtI GCTAGC 1 cut(s) 2565
BmuI ACTGGG 1 cut(s) 1454
BpiI GAAGAC 3 cut(s) 154, 205, 2586
BpmI CTGGAG 1 cut(s) 833
Bpu10I CCTNAGC 3 cut(s) 145, 426, 1172
Bpu1102I GCTNAGC 1 cut(s) 1317
BpuEI CTTGAG 6 cut(s) 243, 875, 2190, 2407, 2525, 2626
BpuMI CCSGG 2 cut(s) 197, 417
BsaAI YACGTR 2 cut(s) 946, 1334
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 9 cut(s) 71, 408, 504, 625, 1234, 1339, 1449, 1599, 2541
BsaWI WCCGGW 3 cut(s) 23, 562, 2480
BsaXI ACNNNNNCTCC 6 cut(s) 141, 171, 557, 587, 2109, 2139
Bse118I RCCGGY 2 cut(s) 1138, 1424
Bse1I ACTGG 3 cut(s) 1460, 1750, 2486
Bse3DI GCAATG 3 cut(s) 477, 1251, 2172
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 4 cut(s) 73, 2304, 2567, 2618
BseDI CCNNGG 9 cut(s) 71, 408, 504, 625, 1234, 1339, 1449, 1599, 2541
BseGI GGATG 4 cut(s) 715, 936, 1675, 1861
BseMI GCAATG 3 cut(s) 477, 1251, 2172
BseMII CTCAG 8 cut(s) 122, 417, 1163, 1308, 1398, 1644, 2010, 2147
BseNI ACTGG 3 cut(s) 1460, 1750, 2486
BseRI GAGGAG 4 cut(s) 167, 1090, 1385, 1670
BseSI GKGCMC 1 cut(s) 607
BseYI CCCAGC 2 cut(s) 264, 952
BsgI GTGCAG 3 cut(s) 2163, 2283, 2341
Bsh1236I CGCG 2 cut(s) 1155, 1414
BshNI GGYRCC 2 cut(s) 67, 1343
BsiHKAI GWGCWC 1 cut(s) 1323
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 7 cut(s) 24, 196, 416, 563, 1139, 1425, 2481
BslFI GGGAC 8 cut(s) 327, 1034, 1629, 1792, 2240, 2327, 2568, 2676
BsmAI GTCTC 3 cut(s) 301, 1470, 2112
BsmFI GGGAC 8 cut(s) 327, 1034, 1629, 1792, 2240, 2327, 2568, 2676
BsoBI CYCGRG 1 cut(s) 600
Bsp120I GGGCCC 1 cut(s) 603
Bsp1286I GDGCHC 4 cut(s) 607, 1323, 1662, 2689
Bsp13I TCCGGA 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
Bsp1720I GCTNAGC 1 cut(s) 1317
Bsp19I CCATGG 3 cut(s) 504, 625, 2541
BspACI CCGC 2 cut(s) 90, 1995
BspCNI CTCAG 8 cut(s) 123, 418, 1164, 1309, 1399, 1643, 2011, 2146
BspEI TCCGGA 1 cut(s) 562
BspFNI CGCG 2 cut(s) 1155, 1414
BspHI TCATGA 2 cut(s) 976, 1686
BspMAI CTGCAG 1 cut(s) 901
BspMI ACCTGC 3 cut(s) 1288, 1501, 2501
BspOI GCTAGC 1 cut(s) 2565
BspPI GGATC 4 cut(s) 95, 1264, 2075, 2451
BspQI GCTCTTC 1 cut(s) 1401
BspT107I GGYRCC 2 cut(s) 67, 1343
BsrDI GCAATG 3 cut(s) 477, 1251, 2172
BsrFI RCCGGY 2 cut(s) 1138, 1424
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 3 cut(s) 1460, 1750, 2486
BssAI RCCGGY 2 cut(s) 1138, 1424
BssECI CCNNGG 9 cut(s) 71, 408, 504, 625, 1234, 1339, 1449, 1599, 2541
BssMI GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 33, 693
BssT1I CCWWGG 8 cut(s) 408, 504, 625, 1234, 1339, 1449, 1599, 2541
Bst2BI CACGAG 2 cut(s) 33, 693
Bst2UI CCWGG 4 cut(s) 73, 2304, 2567, 2618
Bst4CI ACNGT 5 cut(s) 643, 1348, 2162, 2240, 2319
Bst6I CTCTTC 5 cut(s) 79, 366, 1053, 1401, 2290
BstACI GRCGYC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 712
BstBAI YACGTR 2 cut(s) 946, 1334
BstDSI CCRYGG 3 cut(s) 504, 625, 2541
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 4 cut(s) 715, 936, 1675, 1861
BstFNI CGCG 2 cut(s) 1155, 1414
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 6 cut(s) 103, 1259, 1379, 1927, 2083, 2446
BstMAI GTCTC 3 cut(s) 301, 1470, 2112
BstMBI GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
BstMWI GCNNNNNNNGC 7 cut(s) 1148, 1157, 1400, 1502, 1525, 1814, 2186
BstNI CCWGG 4 cut(s) 73, 2304, 2567, 2618
BstNSI RCATGY 2 cut(s) 1611, 2650
BstSCI CCNGG 6 cut(s) 71, 195, 415, 2302, 2565, 2616
BstSFI CTRYAG 3 cut(s) 897, 957, 2193
BstSLI GKGCMC 1 cut(s) 607
BstSNI TACGTA 1 cut(s) 946
BstUI CGCG 2 cut(s) 1155, 1414
BstV2I GAAGAC 3 cut(s) 154, 205, 2586
BstX2I RGATCY 1 cut(s) 2443
BstYI RGATCY 1 cut(s) 2443
BtgI CCRYGG 3 cut(s) 504, 625, 2541
BtsCI GGATG 4 cut(s) 715, 936, 1675, 1861
BtsI GCAGTG 2 cut(s) 2031, 2295
BtsIMutI CAGTG 3 cut(s) 777, 2031, 2295
BveI ACCTGC 3 cut(s) 1288, 1501, 2501
CaiI CAGNNNCTG 1 cut(s) 653
CciI TCATGA 2 cut(s) 976, 1686
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 2 cut(s) 1138, 1424
Csp6I GTAC 3 cut(s) 115, 713, 947
CviQI GTAC 3 cut(s) 115, 713, 947
DinI GGCGCC 1 cut(s) 69
DpnI GATC 6 cut(s) 102, 1258, 1378, 1926, 2082, 2445
DpnII GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
DrdI GACNNNNNNGTC 1 cut(s) 1786
DriI GACNNNNNGTC 1 cut(s) 390
DseDI GACNNNNNNGTC 1 cut(s) 1786
EaeI YGGCCR 1 cut(s) 1231
Eam1104I CTCTTC 5 cut(s) 79, 366, 1053, 1401, 2290
Eam1105I GACNNNNNGTC 1 cut(s) 390
EarI CTCTTC 5 cut(s) 79, 366, 1053, 1401, 2290
Ecl136II GAGCTC 1 cut(s) 1321
Eco105I TACGTA 1 cut(s) 946
Eco130I CCWWGG 8 cut(s) 408, 504, 625, 1234, 1339, 1449, 1599, 2541
Eco24I GRGCYC 4 cut(s) 607, 1323, 1662, 2689
Eco47I GGWCC 7 cut(s) 302, 405, 1779, 2023, 2341, 2483, 2631
Eco53kI GAGCTC 1 cut(s) 1321
Eco57I CTGAAG 2 cut(s) 408, 675
Eco72I CACGTG 1 cut(s) 1334
Eco88I CYCGRG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 1321
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoO109I RGGNCCY 4 cut(s) 604, 2341, 2424, 2631
EcoRII CCWGG 4 cut(s) 71, 2302, 2565, 2616
EcoT14I CCWWGG 8 cut(s) 408, 504, 625, 1234, 1339, 1449, 1599, 2541
EcoT38I GRGCYC 4 cut(s) 607, 1323, 1662, 2689
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 8 cut(s) 408, 504, 625, 1234, 1339, 1449, 1599, 2541
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 8 cut(s) 327, 1034, 1629, 1792, 2240, 2327, 2568, 2676
FauNDI CATATG 2 cut(s) 1147, 2332
FbaI TGATCA 1 cut(s) 1924
FblI GTMKAC 1 cut(s) 445
FokI GGATG 4 cut(s) 722, 943, 1682, 1868
FriOI GRGCYC 4 cut(s) 607, 1323, 1662, 2689
FspBI CTAG 5 cut(s) 1067, 1092, 1221, 2184, 2562
GlaI GCGC 1 cut(s) 69
GsaI CCCAGC 2 cut(s) 268, 956
GsuI CTGGAG 1 cut(s) 833
HaeII RGCGCY 1 cut(s) 71
HapII CCGG 7 cut(s) 24, 196, 416, 563, 1139, 1425, 2481
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 2 cut(s) 736, 1738
HindII GTYRAC 2 cut(s) 736, 1738
HindIII AAGCTT 1 cut(s) 2347
HpaII CCGG 7 cut(s) 24, 196, 416, 563, 1139, 1425, 2481
HphI GGTGA 3 cut(s) 1853, 2378, 2525
Hpy166II GTNNAC 8 cut(s) 172, 446, 553, 736, 936, 1064, 1738, 2680
Hpy8I GTNNAC 8 cut(s) 172, 446, 553, 736, 936, 1064, 1738, 2680
Hpy99I CGWCG 1 cut(s) 1653
HpyAV CCTTC 8 cut(s) 383, 1219, 1264, 1630, 1874, 2107, 2433, 2447
HpyCH4III ACNGT 5 cut(s) 643, 1348, 2162, 2240, 2319
HpyCH4IV ACGT 2 cut(s) 945, 1333
HpyF10VI GCNNNNNNNGC 7 cut(s) 1148, 1157, 1400, 1502, 1525, 1814, 2186
HpySE526I ACGT 2 cut(s) 945, 1333
Hsp92I GRCGYC 1 cut(s) 68
HspAI GCGC 1 cut(s) 68
KasI GGCGCC 1 cut(s) 67
Kpn2I TCCGGA 1 cut(s) 562
KroI GCCGGC 2 cut(s) 1138, 1424
KroNI GCCGGC 2 cut(s) 1140, 1426
Ksp22I TGATCA 1 cut(s) 1924
Kzo9I GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
LguI GCTCTTC 1 cut(s) 1401
LmnI GCTCC 8 cut(s) 280, 520, 621, 814, 1147, 1657, 1805, 2185
LweI GCATC 8 cut(s) 457, 865, 1035, 1101, 1231, 1276, 1381, 1846
MaeI CTAG 5 cut(s) 1067, 1092, 1221, 2184, 2562
MaeII ACGT 2 cut(s) 945, 1333
MaeIII GTNAC 4 cut(s) 1975, 2086, 2268, 2497
MalI GATC 6 cut(s) 102, 1258, 1378, 1926, 2082, 2445
MboI GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
MfeI CAATTG 3 cut(s) 1208, 1677, 1791
MflI RGATCY 1 cut(s) 2443
MhlI GDGCHC 4 cut(s) 607, 1323, 1662, 2689
MlsI TGGCCA 1 cut(s) 1233
MluNI TGGCCA 1 cut(s) 1233
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 5 cut(s) 298, 484, 1089, 1418, 2276
MmeI TCCRAC 1 cut(s) 1783
Mox20I TGGCCA 1 cut(s) 1233
MroI TCCGGA 1 cut(s) 562
MroNI GCCGGC 2 cut(s) 1138, 1424
MroXI GAANNNNTTC 2 cut(s) 357, 1441
MscI TGGCCA 1 cut(s) 1233
MseI TTAA 4 cut(s) 1353, 1584, 2337, 2466
MslI CAYNNNNRTG 2 cut(s) 1031, 1386
Msp20I TGGCCA 1 cut(s) 1233
MspA1I CMGCKG 2 cut(s) 1995, 2192
MspI CCGG 7 cut(s) 24, 196, 416, 563, 1139, 1425, 2481
MspR9I CCNGG 6 cut(s) 73, 197, 417, 2304, 2567, 2618
MunI CAATTG 3 cut(s) 1208, 1677, 1791
MvaI CCWGG 4 cut(s) 73, 2304, 2567, 2618
MvnI CGCG 2 cut(s) 1155, 1414
MwoI GCNNNNNNNGC 7 cut(s) 1148, 1157, 1400, 1502, 1525, 1814, 2186
NaeI GCCGGC 2 cut(s) 1140, 1426
NarI GGCGCC 1 cut(s) 68
NciI CCSGG 2 cut(s) 197, 417
NcoI CCATGG 3 cut(s) 504, 625, 2541
NdeI CATATG 2 cut(s) 1147, 2332
NdeII GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
NgoMIV GCCGGC 2 cut(s) 1138, 1424
NheI GCTAGC 1 cut(s) 2561
NspI RCATGY 2 cut(s) 1611, 2650
PagI TCATGA 2 cut(s) 976, 1686
PaqCI CACCTGC 1 cut(s) 2501
PciSI GCTCTTC 1 cut(s) 1401
PdiI GCCGGC 2 cut(s) 1140, 1426
PdmI GAANNNNTTC 2 cut(s) 357, 1441
PflFI GACNNNGTC 1 cut(s) 2123
PflMI CCANNNNNTGG 1 cut(s) 505
PfoI TCCNGGA 1 cut(s) 2616
PleI GAGTC 5 cut(s) 297, 483, 1088, 1417, 2276
PluTI GGCGCC 1 cut(s) 71
PmaCI CACGTG 1 cut(s) 1334
PmlI CACGTG 1 cut(s) 1334
PpsI GAGTC 5 cut(s) 297, 483, 1088, 1417, 2276
Ppu21I YACGTR 2 cut(s) 946, 1334
PpuMI RGGWCCY 2 cut(s) 2341, 2631
PsiI TTATAA 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 1323
Psp5II RGGWCCY 2 cut(s) 2341, 2631
Psp6I CCWGG 4 cut(s) 71, 2302, 2565, 2616
PspCI CACGTG 1 cut(s) 1334
PspFI CCCAGC 2 cut(s) 264, 952
PspGI CCWGG 4 cut(s) 71, 2302, 2565, 2616
PspOMI GGGCCC 1 cut(s) 603
PspPPI RGGWCCY 2 cut(s) 2341, 2631
PsrI GAACNNNNNNTAC 4 cut(s) 705, 737, 2207, 2239
PstI CTGCAG 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 1 cut(s) 2443
PsyI GACNNNGTC 1 cut(s) 2123
PvuII CAGCTG 1 cut(s) 2192
RsaI GTAC 3 cut(s) 116, 714, 948
RsaNI GTAC 3 cut(s) 115, 713, 947
RseI CAYNNNNRTG 2 cut(s) 1031, 1386
SacI GAGCTC 1 cut(s) 1323
SapI GCTCTTC 1 cut(s) 1401
SaqAI TTAA 4 cut(s) 1353, 1584, 2337, 2466
Sau3AI GATC 6 cut(s) 100, 1256, 1376, 1924, 2080, 2443
SchI GAGTC 5 cut(s) 298, 484, 1089, 1418, 2276
ScrFI CCNGG 6 cut(s) 73, 197, 417, 2304, 2567, 2618
SduI GDGCHC 4 cut(s) 607, 1323, 1662, 2689
SfaNI GCATC 8 cut(s) 457, 865, 1035, 1101, 1231, 1276, 1381, 1846
SfcI CTRYAG 3 cut(s) 897, 957, 2193
SfoI GGCGCC 1 cut(s) 69
SinI GGWCC 7 cut(s) 302, 405, 1779, 2023, 2341, 2483, 2631
SmiMI CAYNNNNRTG 2 cut(s) 1031, 1386
SmlI CTYRAG 6 cut(s) 258, 890, 2205, 2386, 2504, 2605
SmoI CTYRAG 6 cut(s) 258, 890, 2205, 2386, 2504, 2605
SnaBI TACGTA 1 cut(s) 946
SsiI CCGC 2 cut(s) 90, 1995
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 5 cut(s) 1067, 1092, 1221, 2184, 2562
SstI GAGCTC 1 cut(s) 1323
StyD4I CCNGG 6 cut(s) 71, 195, 415, 2302, 2565, 2616
StyI CCWWGG 8 cut(s) 408, 504, 625, 1234, 1339, 1449, 1599, 2541
TaaI ACNGT 5 cut(s) 643, 1348, 2162, 2240, 2319
TaiI ACGT 2 cut(s) 948, 1336
TaqI TCGA 5 cut(s) 369, 846, 1360, 2280, 2548
TatI WGTACW 1 cut(s) 712
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 4 cut(s) 1353, 1584, 2337, 2466
Tru9I TTAA 4 cut(s) 1353, 1584, 2337, 2466
TscAI CASTG 3 cut(s) 777, 2038, 2302
TspDTI ATGAA 5 cut(s) 629, 965, 1146, 1686, 2232
TspRI CASTG 3 cut(s) 777, 2038, 2302
Tth111I GACNNNGTC 1 cut(s) 2123
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 7 cut(s) 302, 405, 1779, 2023, 2341, 2483, 2631
XagI CCTNNNNNAGG 1 cut(s) 866
XapI RAATTY 6 cut(s) 677, 748, 985, 1542, 2000, 2582
XceI RCATGY 2 cut(s) 1611, 2650
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 2 cut(s) 357, 1441
XspI CTAG 5 cut(s) 1067, 1092, 1221, 2184, 2562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.