Rmu_sc0002209.1_g000025

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002209.1
OG0000331
Physical Location & Seq
Forward (+)
94116 .. 95252
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002209.1_g000025.1.cds

Sequence Viewer

Length: 408 bp
atgagccaaagtggaagaatgtatgaactgactgataatgcttactgcataagctatatctggacgagtaatggtaaggtaaataagcttacctaccagcctttgctctcggaggacgtcacggctgcgatcctctcccgtctcggagccatcgacatcctcgagacggctcagaaggtctgcaagacgtggcacaaagtctgcaaggaccctctcatccgcgacgatgatctccccagagttaatgacttggggaagatgtgccgctacgccgttgatcggagcgatgggaaattggccagtatcaatcttgattccttcaccaccgatgagctcctcaagtacatcactaataggtattgtttttcatgctttaaaagaaagacagaaggtgaagctgtcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

135

Amino Acids

15.42

Weight (kDa)

7.54

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 220, 265
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 166, 279
AjiI CACGTC 1 cut(s) 189
AluBI AGCT 4 cut(s) 54, 88, 334, 398
AluI AGCT 4 cut(s) 54, 88, 334, 398
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 146, 158
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 313, 404
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 299
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 158, 281
BceAI ACGGC 3 cut(s) 138, 183, 257
BcoDI GTCTC 2 cut(s) 146, 158
BisI GCNGC 2 cut(s) 126, 265
BlsI GCNGC 2 cut(s) 127, 266
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 148, 210
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 279
Bse1I ACTGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 156, 216
BseLI CCNNNNNNNGG 2 cut(s) 166, 279
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 166, 279
BsmAI GTCTC 2 cut(s) 146, 158
BsmBI CGTCTC 2 cut(s) 146, 158
BsnI GGCC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 129, 229, 277
BspACI CCGC 2 cut(s) 220, 265
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 148, 210
BspPI GGATC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 300
BssMI GATC 3 cut(s) 129, 229, 277
BssNI GRCGYC 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 156, 216
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 3 cut(s) 132, 232, 280
BstMAI GTCTC 2 cut(s) 146, 158
BstMBI GATC 3 cut(s) 129, 229, 277
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 300
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 156, 216
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 369
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 171
DpnI GATC 3 cut(s) 131, 231, 279
DpnII GATC 3 cut(s) 129, 229, 277
DraI TTTAAA 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 2 cut(s) 146, 158
FaeI CATG 1 cut(s) 372
FaiI YATR 4 cut(s) 24, 50, 57, 370
FatI CATG 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 126, 265
FokI GGATG 2 cut(s) 143, 203
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 126, 265
GluI GCNGC 2 cut(s) 126, 265
HaeIII GGCC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 314
HphI GGTGA 2 cut(s) 313, 404
Hpy188I TCNGA 4 cut(s) 112, 146, 174, 282
Hpy188III TCNNGA 3 cut(s) 61, 163, 311
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 169, 328, 383
HpyCH4IV ACGT 2 cut(s) 117, 188
HpyCH4V TGCA 3 cut(s) 48, 183, 204
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 2 cut(s) 117, 188
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 372
Kzo9I GATC 3 cut(s) 129, 229, 277
LmnI GCTCC 3 cut(s) 146, 282, 339
LpnPI CCDG 4 cut(s) 46, 110, 250, 313
Lsp1109I GCAGC 1 cut(s) 112
MaeII ACGT 2 cut(s) 117, 188
MaeIII GTNAC 1 cut(s) 118
MalI GATC 3 cut(s) 131, 231, 279
MboI GATC 3 cut(s) 129, 229, 277
MboII GAAGA 2 cut(s) 27, 268
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 299
MnlI CCTC 5 cut(s) 106, 143, 170, 222, 347
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 3 cut(s) 243, 375, 406
Msp20I TGGCCA 1 cut(s) 299
MvnI CGCG 1 cut(s) 222
NdeII GATC 3 cut(s) 129, 229, 277
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 2 cut(s) 148, 210
NmuCI GTSAC 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 159
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 127, 266
PpuMI RGGWCCY 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 148, 210
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 243, 375, 406
SatI GCNGC 2 cut(s) 126, 265
Sau3AI GATC 3 cut(s) 129, 229, 277
Sau96I GGNCC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 161, 338
SmoI CTYRAG 2 cut(s) 161, 338
Sse9I AATT 1 cut(s) 293
SsiI CCGC 2 cut(s) 220, 265
SstI GAGCTC 1 cut(s) 336
TaiI ACGT 2 cut(s) 120, 191
TaqI TCGA 2 cut(s) 153, 162
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 3 cut(s) 243, 375, 406
Tru9I TTAA 3 cut(s) 243, 375, 406
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 39, 357
VpaK11BI GGWCC 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 161
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.