Rh6BG508700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000331
Physical Location & Seq
Reverse (-)
70550763 .. 70551598
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG508700.1

Sequence Viewer

Length: 324 bp
ATGGGCGACACCTCCTCCGCCGCAAAGAGATGGCAGCGAGACTGGACGGAGCTCCCTGACATCGCTACGGAGTCGATACTGTCGCGGCTGGGCGCCATTGACATGTTGGAGAGCGCTCAGAAGGTTTGCATGAAATGGAGCAAAATCTATAAGAACAACACTCGGATTTGGCGCACCGTCGACATGAGAAATGATGGTGATTTTCCATACGACCTGGAGATTATGTGCTGCCACGCCGTTGATCGCAGCCGCGGTGAGCTCGTCGATATTAACATCGAGCACTTCGGCACCGATGAGCTGCTTCACTATATCACTGATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

107

Amino Acids

12.51

Weight (kDa)

5.09

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 92, 287
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 85, 252
AciI CCGC 5 cut(s) 18, 21, 85, 250, 252
AcyI GRCGYC 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 102
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 52, 259, 298
AluI AGCT 3 cut(s) 52, 259, 298
Alw21I GWGCWC 3 cut(s) 54, 261, 282
Alw26I GTCTC 1 cut(s) 33
Aor51HI AGCGCT 1 cut(s) 115
ApeKI GCWGC 4 cut(s) 34, 228, 246, 298
AspLEI GCGC 3 cut(s) 95, 116, 174
AsuHPI GGTGA 2 cut(s) 209, 266
BanI GGYRCC 2 cut(s) 92, 287
BanII GRGCYC 2 cut(s) 54, 261
Bbv12I GWGCWC 3 cut(s) 54, 261, 282
BbvI GCAGC 4 cut(s) 46, 215, 258, 285
BccI CCATC 2 cut(s) 24, 188
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 33
BfoI RGCGCY 2 cut(s) 96, 117
BisI GCNGC 7 cut(s) 21, 35, 86, 229, 247, 250, 299
BlsI GCNGC 7 cut(s) 22, 36, 87, 230, 248, 251, 300
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 94, 289
BmrFI CCNGG 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 3 cut(s) 29, 209, 239
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 4
BseXI GCAGC 4 cut(s) 46, 215, 258, 285
BseYI CCCAGC 1 cut(s) 88
Bsh1236I CGCG 2 cut(s) 85, 252
BshNI GGYRCC 2 cut(s) 92, 287
BsiHKAI GWGCWC 3 cut(s) 54, 261, 282
BsmAI GTCTC 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 54, 261, 282
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 5 cut(s) 18, 21, 85, 250, 252
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 2 cut(s) 85, 252
BspLI GGNNCC 2 cut(s) 94, 289
BspT107I GGYRCC 2 cut(s) 92, 287
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 81, 178
BstACI GRCGYC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 85, 252
BstH2I RGCGCY 2 cut(s) 96, 117
BstHHI GCGC 3 cut(s) 95, 116, 174
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 2 cut(s) 85, 252
BstV1I GCAGC 4 cut(s) 46, 215, 258, 285
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 312
CfoI GCGC 3 cut(s) 95, 116, 174
Cfr42I CCGCGG 1 cut(s) 253
CviAII CATG 3 cut(s) 103, 130, 184
CviJI RGCY 5 cut(s) 52, 88, 249, 259, 298
CviKI_1 RGCY 5 cut(s) 52, 88, 249, 259, 298
DdeI CTNAG 1 cut(s) 117
DinI GGCGCC 1 cut(s) 94
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 7
Ecl136II GAGCTC 2 cut(s) 52, 259
Eco24I GRGCYC 2 cut(s) 54, 261
Eco47III AGCGCT 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 52, 259
EcoICRI GAGCTC 2 cut(s) 52, 259
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 54, 261
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
FaeI CATG 3 cut(s) 106, 133, 187
FaiI YATR 7 cut(s) 104, 131, 150, 185, 208, 224, 309
FatI CATG 3 cut(s) 102, 129, 183
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 7 cut(s) 21, 35, 86, 229, 247, 250, 299
FriOI GRGCYC 2 cut(s) 54, 261
Fsp4HI GCNGC 7 cut(s) 21, 35, 86, 229, 247, 250, 299
GlaI GCGC 3 cut(s) 94, 115, 173
GluI GCNGC 7 cut(s) 21, 35, 86, 229, 247, 250, 299
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 2 cut(s) 96, 117
HhaI GCGC 3 cut(s) 95, 116, 174
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 3 cut(s) 106, 133, 187
Hin6I GCGC 3 cut(s) 93, 114, 172
HinP1I GCGC 3 cut(s) 93, 114, 172
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 71
HphI GGTGA 2 cut(s) 209, 266
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 120, 165
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 182, 266
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 81, 178
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 3 cut(s) 106, 133, 187
HspAI GCGC 3 cut(s) 93, 114, 172
KasI GGCGCC 1 cut(s) 92
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 3 cut(s) 49, 57, 138
LpnPI CCDG 5 cut(s) 28, 69, 74, 200, 227
Lsp1109I GCAGC 4 cut(s) 46, 215, 258, 285
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MhlI GDGCHC 3 cut(s) 54, 261, 282
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 22, 25
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 2 cut(s) 85, 252
NarI GGCGCC 1 cut(s) 93
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 106, 133, 187
NlaIV GGNNCC 2 cut(s) 94, 289
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PkrI GCNGC 7 cut(s) 22, 36, 87, 230, 248, 251, 300
PleI GAGTC 1 cut(s) 79
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 79
PscI ACATGT 1 cut(s) 102
Psp124BI GAGCTC 2 cut(s) 54, 261
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 94, 289
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 2 cut(s) 54, 261
SacII CCGCGG 1 cut(s) 253
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 7 cut(s) 21, 35, 86, 229, 247, 250, 299
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 54, 261, 282
SetI ASST 7 cut(s) 14, 54, 126, 216, 261, 300, 323
SfoI GGCGCC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 101
SsiI CCGC 5 cut(s) 18, 21, 85, 250, 252
SspDI GGCGCC 1 cut(s) 92
SstI GAGCTC 2 cut(s) 54, 261
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 81, 178
TaqI TCGA 4 cut(s) 74, 180, 264, 276
TauI GCSGC 3 cut(s) 23, 88, 252
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 319
TseI GCWGC 4 cut(s) 34, 228, 246, 298
TspDTI ATGAA 1 cut(s) 146
TspGWI ACGGA 2 cut(s) 62, 83
TspRI CASTG 1 cut(s) 319
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.