Prupe.4G087800_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000331
Physical Location & Seq
Forward (+)
4305663 .. 4307054
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G087800.1

Sequence Viewer

Length: 594 bp
ATGGGCAAGAAAACCCCCCGCTCAAAGGGCAAACCCAAATCCAGAACCCCACCACCAGCACCACCCGAAACCGAAACCGAAACGCGAAACTGGCTGGACCTTCCACGGGACGTTACCGTTTCAATACTTTCACGACTGAGAGCGATCGATGTTTTGGAGAGCGCGCAGAAGGTGTGCATGGTTTGGCGCAACATCTGCAAAGATCCTCTCATCTGGCGCACCGTGGACATGAGCAATGGTGATTGCGACTTTGGGGCCTACGACTTGGATAAGATGCGCCGCCACGCAGTGGATCGTAGCTGTGGTAATCTGGTCGATATCAATAACGAGCACAACTGCACCGATGATCTCCTTAAGTATATCACCGACAGGTGCAGTGGAATCAGACGGCTCCGGTTAGTGTATTGCTATTTCACGTCAGTGGGGAGGTTTTATGAAGTGGCTTCAAGACTTGCTCTGTTAGAGAAGCTTAACAGCTTCTCTAACAGAGCAAGTCCATGGCCCAATGTATGCCCACACCAACCGGACCCAGAAGTCCTCGTGCAGCCCAAAACTTCATATTTCATAAGTTGTTCGGAGGTCATGGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

198

Amino Acids

22.57

Weight (kDa)

8.73

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 21
AccII CGCG 2 cut(s) 85, 164
AciI CCGC 2 cut(s) 19, 280
AclWI GGATC 2 cut(s) 197, 300
AdeI CACNNNGTG 1 cut(s) 289
AfiI CCNNNNNNNGG 3 cut(s) 25, 106, 289
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 123, 447
AjiI CACGTC 1 cut(s) 417
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 3 cut(s) 300, 469, 477
AluI AGCT 3 cut(s) 300, 469, 477
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 2 cut(s) 197, 300
AoxI GGCC 2 cut(s) 255, 500
ApeKI GCWGC 1 cut(s) 544
AspLEI GCGC 5 cut(s) 164, 166, 189, 219, 279
AspS9I GGNCC 4 cut(s) 97, 255, 501, 526
AsuHPI GGTGA 2 cut(s) 251, 355
AvaII GGWCC 2 cut(s) 97, 526
BauI CACGAG 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 556
BceAI ACGGC 1 cut(s) 404
BfrI CTTAAG 1 cut(s) 353
BisI GCNGC 2 cut(s) 280, 545
BlsI GCNGC 2 cut(s) 281, 546
Bme18I GGWCC 2 cut(s) 97, 526
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 4 cut(s) 97, 255, 501, 526
BmiI GGNNCC 3 cut(s) 256, 392, 528
BmsI GCATC 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 104, 222, 497
BsaWI WCCGGW 2 cut(s) 393, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 106, 289
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 241
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 104, 222, 497
BseLI CCNNNNNNNGG 3 cut(s) 25, 106, 289
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 95
BsePI GCGCGC 1 cut(s) 162
BseXI GCAGC 1 cut(s) 556
BsgI GTGCAG 3 cut(s) 322, 394, 563
Bsh1236I CGCG 2 cut(s) 85, 164
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 257, 502
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 394, 524
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 25, 106, 289
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 257, 502
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 4 cut(s) 144, 202, 292, 346
Bsp19I CCATGG 1 cut(s) 497
BspACI CCGC 2 cut(s) 19, 280
BspANI GGCC 2 cut(s) 257, 502
BspCNI CTCAG 1 cut(s) 129
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 2 cut(s) 85, 164
BspLI GGNNCC 3 cut(s) 256, 392, 528
BspPI GGATC 2 cut(s) 197, 300
BspTI CTTAAG 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 104, 222, 497
BssHII GCGCGC 1 cut(s) 162
BssMI GATC 4 cut(s) 144, 202, 292, 346
BssSI CACGAG 1 cut(s) 539
BssT1I CCWWGG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 118, 223
BstAFI CTTAAG 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 3 cut(s) 104, 222, 497
BstFNI CGCG 2 cut(s) 85, 164
BstHHI GCGC 5 cut(s) 164, 166, 189, 219, 279
BstKTI GATC 4 cut(s) 147, 205, 295, 349
BstMBI GATC 4 cut(s) 144, 202, 292, 346
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 3 cut(s) 27, 91, 195
BstUI CGCG 2 cut(s) 85, 164
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 2 cut(s) 257, 502
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 3 cut(s) 104, 222, 497
BtrI CACGTC 1 cut(s) 417
BtsI GCAGTG 2 cut(s) 294, 382
BtsIMutI CAGTG 3 cut(s) 294, 382, 426
Cac8I GCNNGC 1 cut(s) 164
CfoI GCGC 5 cut(s) 164, 166, 189, 219, 279
Cfr13I GGNCC 4 cut(s) 97, 255, 501, 526
ClaI ATCGAT 1 cut(s) 147
CviAII CATG 4 cut(s) 178, 229, 498, 583
CviJI RGCY 9 cut(s) 94, 257, 300, 391, 443, 469, 477, 502, 547
CviKI_1 RGCY 9 cut(s) 94, 257, 300, 391, 443, 469, 477, 502, 547
DdeI CTNAG 1 cut(s) 137
DpnI GATC 4 cut(s) 146, 204, 294, 348
DpnII GATC 4 cut(s) 144, 202, 292, 346
DraIII CACNNNGTG 1 cut(s) 289
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 497
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 97, 526
EcoO109I RGGNCCY 1 cut(s) 255
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 4 cut(s) 181, 232, 501, 586
FaiI YATR 9 cut(s) 179, 230, 360, 435, 499, 511, 559, 566, 584
FaqI GGGAC 1 cut(s) 122
FatI CATG 4 cut(s) 177, 228, 497, 582
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 280, 545
Fsp4HI GCNGC 2 cut(s) 280, 545
GlaI GCGC 5 cut(s) 163, 165, 188, 218, 278
GluI GCNGC 2 cut(s) 280, 545
HaeIII GGCC 2 cut(s) 257, 502
HapII CCGG 2 cut(s) 394, 524
HhaI GCGC 5 cut(s) 164, 166, 189, 219, 279
Hin1II CATG 4 cut(s) 181, 232, 501, 586
Hin6I GCGC 5 cut(s) 162, 164, 187, 217, 277
HinP1I GCGC 5 cut(s) 162, 164, 187, 217, 277
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 1 cut(s) 381
HpaII CCGG 2 cut(s) 394, 524
HphI GGTGA 2 cut(s) 251, 355
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 386, 577
Hpy188III TCNNGA 3 cut(s) 42, 132, 447
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 110, 163
HpyCH4III ACNGT 2 cut(s) 118, 223
HpyCH4IV ACGT 2 cut(s) 111, 416
HpyCH4V TGCA 5 cut(s) 177, 198, 339, 375, 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 91, 195
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 2 cut(s) 111, 416
Hsp92II CATG 4 cut(s) 181, 232, 501, 586
HspAI GCGC 5 cut(s) 162, 164, 187, 217, 277
Kzo9I GATC 4 cut(s) 144, 202, 292, 346
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 264
MaeII ACGT 2 cut(s) 111, 416
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 146, 204, 294, 348
MbiI CCGCTC 1 cut(s) 21
MboI GATC 4 cut(s) 144, 202, 292, 346
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 333
MnlI CCTC 4 cut(s) 216, 420, 548, 571
MseI TTAA 2 cut(s) 354, 471
MslI CAYNNNNRTG 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 2 cut(s) 394, 524
MvnI CGCG 2 cut(s) 85, 164
MwoI GCNNNNNNNGC 3 cut(s) 27, 91, 195
NcoI CCATGG 1 cut(s) 497
NdeII GATC 4 cut(s) 144, 202, 292, 346
NlaIII CATG 4 cut(s) 181, 232, 501, 586
NlaIV GGNNCC 3 cut(s) 256, 392, 528
OliI CACNNNNGTG 1 cut(s) 419
PauI GCGCGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 2 cut(s) 281, 546
Ple19I CGATCG 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 256, 392, 528
PspPI GGNCC 4 cut(s) 97, 255, 501, 526
PsuI RGATCY 1 cut(s) 202
PteI GCGCGC 1 cut(s) 162
PvuI CGATCG 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 2 cut(s) 354, 471
SatI GCNGC 2 cut(s) 280, 545
Sau3AI GATC 4 cut(s) 144, 202, 292, 346
Sau96I GGNCC 4 cut(s) 97, 255, 501, 526
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 1 cut(s) 264
SinI GGWCC 2 cut(s) 97, 526
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SsiI CCGC 2 cut(s) 19, 280
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 2 cut(s) 118, 223
TaiI ACGT 2 cut(s) 114, 419
TaqI TCGA 2 cut(s) 147, 315
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 2 cut(s) 354, 471
Tru9I TTAA 2 cut(s) 354, 471
TscAI CASTG 3 cut(s) 294, 382, 426
TseI GCWGC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 450, 546, 553
TspRI CASTG 3 cut(s) 294, 382, 426
Van91I CCANNNNNTGG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 97, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.