Rmu_co8228227.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8228227.1
OG0000331
Physical Location & Seq
Reverse (-)
2 .. 254
253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8228227.1_g000001.1.cds

Sequence Viewer

Length: 253 bp
atgcatgatctacaccacctgcagctttgcggtaataagctgaccaaagatggcttgcagaaaatccttgattgttgtccaaatcttgagtcacttgatctgcgcaagtgtttcaatatcaatttcggggtagtttcgaaaagaagatgcagtaaacgaattaaaagtttacggcttcctgatgattccaccgatgactatgagtttgatcgtgcaaatcgtagggagttatatgctcaaacccattgcgacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

84

Amino Acids

9.87

Weight (kDa)

8.25

Isoelectric Point (pI)

68.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 27
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 27
AciI CCGC 1 cut(s) 30
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 2 cut(s) 25, 40
AluI AGCT 2 cut(s) 25, 40
ApeKI GCWGC 1 cut(s) 22
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 188, 220
AspLEI GCGC 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 137
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmsI GCATC 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 137
Bsp143I GATC 3 cut(s) 7, 97, 208
BspACI CCGC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 244
BssMI GATC 3 cut(s) 7, 97, 208
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 56
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 10, 100, 211
BstMBI GATC 3 cut(s) 7, 97, 208
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 34
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 105
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 25, 40, 54, 175
CviKI_1 RGCY 4 cut(s) 25, 40, 54, 175
DpnI GATC 3 cut(s) 9, 99, 210
DpnII GATC 3 cut(s) 7, 97, 208
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 201, 232, 234
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 2 cut(s) 89, 185
Hpy166II GTNNAC 2 cut(s) 155, 170
Hpy188III TCNNGA 2 cut(s) 86, 179
Hpy8I GTNNAC 2 cut(s) 155, 170
HpyCH4V TGCA 5 cut(s) 4, 22, 58, 150, 215
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 7, 97, 208
LpnPI CCDG 2 cut(s) 32, 192
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 90
MalI GATC 3 cut(s) 9, 99, 210
MboI GATC 3 cut(s) 7, 97, 208
MboII GAAGA 1 cut(s) 156
MluCI AATT 2 cut(s) 121, 159
MlyI GAGTC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 162
NdeII GATC 3 cut(s) 7, 97, 208
NlaIII CATG 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 3 cut(s) 7, 97, 208
SchI GAGTC 1 cut(s) 98
SetI ASST 3 cut(s) 21, 27, 42
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 121, 159
SsiI CCGC 1 cut(s) 30
TaqI TCGA 1 cut(s) 137
TasI AATT 2 cut(s) 121, 159
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.