MD01G1164600.v1.1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000331
Physical Location & Seq
Reverse (-)
26906511 .. 26907390
880 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1164600.v1.1.491

Sequence Viewer

Length: 570 bp
ATGAAAAGCCTTGGAGCAAAGCGTGTGCGAAACTGCCATCGATGGACGGAACTACCAGATGACGTTATAATATCAATACTCTCACGGTTGACAACCTTCGACATCCTGACGAGCGTTCCGATGGTGTGCAAGGTGTGGTTCAACATCTGTAAGAATCCTCTCATGTGGCGCACCATTGACATGCGAGGACTCTTAGTCAAGAGCAATCGTGAGATATATCTCTTAACCATGAAGTACGATTTGAAGAAGATGTGTCGACACGCGGTTGATAGCAGCTGTGGTAATTTGGTCGAGGTCAAGTTAGACGACTTCAACGACGCCGCTACTGTCCTTGAGTATATCGCTGATAGTTCGAGTAGAATTAGAAGTCTCCGACTCGTGAATTCTGCTGTGGAACTGGGGAAAGTGGCTTCAAAGCTTCCATTGTTGGAGCACCTTGAAATTTCATTGTATCATGGATTGTCACGTGAATCCTTGCAAGTGGTCGGACGCTCTTGTCCACTTTTGAAATCATTCAAACTTAACAAAACGTGGTACGGAGGAGAAATAACGACGACGCTCTTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

190

Amino Acids

21.56

Weight (kDa)

9.28

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 15 - 61 1.7e-09 F-box-like
F-box PF00646 15 - 57 1.4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AasI GACNNNNNNGTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 256
AccII CGCG 1 cut(s) 263
AciI CCGC 2 cut(s) 263, 321
AcsI RAATTY 2 cut(s) 382, 441
AcvI CACGTG 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 2 cut(s) 236, 536
AgsI TTSAA 7 cut(s) 142, 244, 313, 414, 440, 508, 517
AhdI GACNNNNNGTC 1 cut(s) 194
AluBI AGCT 2 cut(s) 276, 418
AluI AGCT 2 cut(s) 276, 418
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 382, 441
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 1 cut(s) 171
BauI CACGAG 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 285
BccI CCATC 3 cut(s) 36, 45, 115
BcgI CGANNNNNNTGC 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 374
BisI GCNGC 2 cut(s) 274, 321
BlsI GCNGC 2 cut(s) 275, 322
BmeRI GACNNNNNGTC 1 cut(s) 194
BmrI ACTGGG 1 cut(s) 407
BmuI ACTGGG 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 353
Bsa29I ATCGAT 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 402
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 435
BspACI CCGC 2 cut(s) 263, 321
BspDI ATCGAT 1 cut(s) 40
BspFNI CGCG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 1 cut(s) 10
Bst2BI CACGAG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 87, 328
BstACI GRCGYC 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 184
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 40
BsuTUI ATCGAT 1 cut(s) 40
BtsCI GGATG 1 cut(s) 102
CfoI GCGC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 40
CseI GACGC 3 cut(s) 326, 498, 565
Csp6I GTAC 2 cut(s) 235, 535
CviAII CATG 4 cut(s) 163, 181, 229, 455
CviJI RGCY 4 cut(s) 9, 276, 410, 418
CviKI_1 RGCY 4 cut(s) 9, 276, 410, 418
CviQI GTAC 2 cut(s) 235, 535
DdeI CTNAG 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 495
DriI GACNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 495
Eam1105I GACNNNNNGTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 10
Eco72I CACGTG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 4 cut(s) 166, 184, 232, 458
FaiI YATR 7 cut(s) 68, 164, 182, 217, 230, 339, 456
FatI CATG 4 cut(s) 162, 180, 228, 454
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 274, 321
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 274, 321
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 274, 321
HgaI GACGC 3 cut(s) 326, 498, 565
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 4 cut(s) 166, 184, 232, 458
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 2 cut(s) 90, 257
HindII GTYRAC 2 cut(s) 90, 257
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 4 cut(s) 154, 189, 375, 470
Hpy166II GTNNAC 3 cut(s) 90, 257, 500
Hpy188I TCNGA 3 cut(s) 120, 374, 488
Hpy188III TCNNGA 4 cut(s) 106, 199, 209, 379
Hpy8I GTNNAC 3 cut(s) 90, 257, 500
Hpy99I CGWCG 3 cut(s) 320, 556, 559
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 87, 328
HpyCH4IV ACGT 3 cut(s) 63, 466, 530
HpyCH4V TGCA 3 cut(s) 129, 478, 565
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 3 cut(s) 63, 466, 530
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 4 cut(s) 166, 184, 232, 458
HspAI GCGC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 14, 430
LpnPI CCDG 3 cut(s) 69, 119, 383
Lsp1109I GCAGC 1 cut(s) 285
MaeII ACGT 3 cut(s) 63, 466, 530
MaeIII GTNAC 1 cut(s) 462
MboII GAAGA 2 cut(s) 256, 259
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 4 cut(s) 283, 360, 382, 441
MlyI GAGTC 2 cut(s) 183, 369
MmeI TCCRAC 3 cut(s) 397, 408, 466
MnlI CCTC 4 cut(s) 168, 179, 286, 533
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 2 cut(s) 224, 522
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 276
MvnI CGCG 1 cut(s) 263
NlaIII CATG 4 cut(s) 166, 184, 232, 458
NmuCI GTSAC 1 cut(s) 462
NspI RCATGY 1 cut(s) 184
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 312
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 154, 470
PkrI GCNGC 2 cut(s) 275, 322
PleI GAGTC 2 cut(s) 183, 369
PmaCI CACGTG 1 cut(s) 467
PmlI CACGTG 1 cut(s) 467
PpsI GAGTC 2 cut(s) 183, 369
Ppu21I YACGTR 1 cut(s) 467
PsiI TTATAA 1 cut(s) 68
PspCI CACGTG 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 276
RsaI GTAC 2 cut(s) 236, 536
RsaNI GTAC 2 cut(s) 235, 535
RseI CAYNNNNRTG 1 cut(s) 179
SalI GTCGAC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 224, 522
SatI GCNGC 2 cut(s) 274, 321
SchI GAGTC 2 cut(s) 183, 369
SduI GDGCHC 1 cut(s) 435
SetI ASST 9 cut(s) 66, 98, 135, 278, 297, 420, 438, 469, 533
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 4 cut(s) 283, 360, 382, 441
SsiI CCGC 2 cut(s) 263, 321
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 87, 328
TaiI ACGT 3 cut(s) 66, 469, 533
TaqI TCGA 5 cut(s) 40, 99, 256, 291, 353
TasI AATT 4 cut(s) 283, 360, 382, 441
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 2 cut(s) 154, 470
Tru1I TTAA 2 cut(s) 224, 522
Tru9I TTAA 2 cut(s) 224, 522
TseFI GTSAC 1 cut(s) 462
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 462
TspDTI ATGAA 3 cut(s) 17, 245, 435
TspGWI ACGGA 2 cut(s) 62, 552
XapI RAATTY 2 cut(s) 382, 441
XceI RCATGY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.