Rorug05G0025100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000331
Physical Location & Seq
Forward (+)
1608905 .. 1609222
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0025100.1

Sequence Viewer

Length: 318 bp
ATGGAACTGCAAAGAGGTACCAAGAGAAAAGAGCCCGAAGCTGCTGGAGACCCTTCGATTCAACCTGTAGTCAAAAGAGAACACATTTTCTGTCGATACTGTTTGAGCGTTGGAGATCATAAAACTTCAGTTTGCCCGAAGAAACATTACATATGTAGAGACTGTGGTACCCTATTTCCCTGCGAGAAGAAGGACGCCCATGGCGAAGAACATAAAGTATTAAATTATTGCCTTGGTTGTAACAAATGGGGCCACTTGTTAGAAATGTGCCCTGACCTTGATGATTTGGATGTAAACTATGACCCTCTAGACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

105

Amino Acids

12.12

Weight (kDa)

6.04

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 17, 167
AccB1I GGYRCC 2 cut(s) 17, 167
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 2 cut(s) 19, 169
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 42, 153
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 41
Asp718I GGTACC 2 cut(s) 17, 167
AspS9I GGNCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 272
BaeI ACNNNNGTAYC 2 cut(s) 151, 184
BanI GGYRCC 2 cut(s) 17, 167
BanII GRGCYC 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BbvI GCAGC 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 42, 153
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 19, 169, 251
BpmI CTGGAG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 199, 232
Bse1I ACTGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 199, 232
BseGI GGATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 2 cut(s) 17, 167
BsmAI GTCTC 2 cut(s) 42, 153
BsnI GGCC 1 cut(s) 252
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 36, 272
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 19, 169, 251
BspT107I GGYRCC 2 cut(s) 17, 167
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 199, 232
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 199, 232
Bst4CI ACNGT 2 cut(s) 101, 164
BstACI GRCGYC 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 42, 153
BstMBI GATC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 18, 168
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 34, 41, 252
CviKI_1 RGCY 3 cut(s) 34, 41, 252
CviQI GTAC 2 cut(s) 18, 168
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 199, 232
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 199, 232
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 199, 232
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 120, 152, 154, 201, 213, 300
FatI CATG 1 cut(s) 199
FauNDI CATATG 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 308
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 252
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 63, 184
HpyCH4III ACNGT 2 cut(s) 101, 164
HpyCH4V TGCA 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 203
KpnI GGTACC 2 cut(s) 21, 171
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 30, 78, 193, 285, 298
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 151, 199, 218
MhlI GDGCHC 2 cut(s) 36, 272
MluCI AATT 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 2 cut(s) 8, 315
MseI TTAA 1 cut(s) 221
NcoI CCATGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 152
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 3 cut(s) 19, 169, 251
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 19, 169, 251
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 2 cut(s) 19, 169
RsaNI GTAC 2 cut(s) 18, 168
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 250
SduI GDGCHC 2 cut(s) 36, 272
SetI ASST 4 cut(s) 19, 43, 67, 279
SfcI CTRYAG 1 cut(s) 66
Sse9I AATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 199, 232
TaaI ACNGT 2 cut(s) 101, 164
TaqI TCGA 2 cut(s) 56, 94
TasI AATT 1 cut(s) 223
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.