Rroxscaffold_2G00083550

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000331
Physical Location & Seq
Forward (+)
6251005 .. 6251494
490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083550.1

Sequence Viewer

Length: 399 bp
ATGGACCGAAACCAAGAACAAAACTGCCGGAACTGGATTGACCTTCCTCACGACCTCACAGCTTCGATATTATCACGGCTGGGAGTGATCGAGATTCTGCAGACAGCTCAGAAGGTGTGCATGACGTGGCGCCGAATCTGCAAGGACCCGATGATGTGGCGCACCATCGACATGTGCGGTGTTTGGGTTTGGGGCAACTCCAAATCATGGAAGAAGAATGCACGGAAGATGGCAGCGATGTGCCGCCACGCCGTTGATCTTGGCCGTGGCAATGTCTGCGTCGTTGTTTCAATCTTACGGTGGAATCTCCTTCCACATGAAGATAAGGACAAGTCTTTCGATAGTACATTTATTAGGATGTTAGAAGAGATTGGAAATGTTTTAATTGGCGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

132

Amino Acids

15.35

Weight (kDa)

8.85

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 57 2e-09 F-box-like
F-box PF00646 12 - 54 1.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 2 cut(s) 177, 244
AcoI YGGCCR 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 130
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 291
AjiI CACGTC 1 cut(s) 126
AluBI AGCT 3 cut(s) 62, 107, 395
AluI AGCT 3 cut(s) 62, 107, 395
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspLEI GCGC 2 cut(s) 132, 162
AspS9I GGNCC 2 cut(s) 4, 145
AvaII GGWCC 2 cut(s) 4, 145
BanI GGYRCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 173, 223
BceAI ACGGC 3 cut(s) 92, 236, 249
BfmI CTRYAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 2 cut(s) 234, 244
BlsI GCNGC 2 cut(s) 235, 245
Bme18I GGWCC 2 cut(s) 4, 145
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 4, 145
BmiI GGNNCC 2 cut(s) 131, 147
BsaHI GRCGYC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 207
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 87, 256
BspACI CCGC 2 cut(s) 177, 244
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 131, 147
BspMAI CTGCAG 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 87, 256
BssNI GRCGYC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 162
BstKTI GATC 2 cut(s) 90, 259
BstMBI GATC 2 cut(s) 87, 256
BstMWI GCNNNNNNNGC 2 cut(s) 138, 276
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 251
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 363
CfoI GCGC 2 cut(s) 132, 162
Cfr13I GGNCC 2 cut(s) 4, 145
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 345
CviAII CATG 4 cut(s) 121, 172, 207, 317
CviJI RGCY 5 cut(s) 62, 79, 107, 264, 395
CviKI_1 RGCY 5 cut(s) 62, 79, 107, 264, 395
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 1 cut(s) 108
DinI GGCGCC 1 cut(s) 131
DpnI GATC 2 cut(s) 89, 258
DpnII GATC 2 cut(s) 87, 256
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 4, 145
EcoO109I RGGNCCY 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
FaeI CATG 4 cut(s) 124, 175, 210, 320
FaiI YATR 4 cut(s) 122, 173, 208, 318
FatI CATG 4 cut(s) 120, 171, 206, 316
Fnu4HI GCNGC 2 cut(s) 234, 244
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 234, 244
GlaI GCGC 2 cut(s) 131, 161
GluI GCNGC 2 cut(s) 234, 244
GsaI CCCAGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 28
HgaI GACGC 1 cut(s) 268
HhaI GCGC 2 cut(s) 132, 162
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 4 cut(s) 124, 175, 210, 320
Hin6I GCGC 2 cut(s) 130, 160
HinP1I GCGC 2 cut(s) 130, 160
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 94, 135, 304
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 50, 91
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 53, 106, 320
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 100, 120, 141, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 276
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 4 cut(s) 124, 175, 210, 320
HspAI GCGC 2 cut(s) 130, 160
KasI GGCGCC 1 cut(s) 129
Kzo9I GATC 2 cut(s) 87, 256
LpnPI CCDG 3 cut(s) 19, 41, 65
Lsp1109I GCAGC 1 cut(s) 245
MaeII ACGT 1 cut(s) 125
MalI GATC 2 cut(s) 89, 258
MboI GATC 2 cut(s) 87, 256
MboII GAAGA 5 cut(s) 223, 226, 238, 332, 377
MluCI AATT 1 cut(s) 384
Mly113I GGCGCC 1 cut(s) 130
MnlI CCTC 2 cut(s) 57, 65
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 138, 276
NarI GGCGCC 1 cut(s) 130
NdeII GATC 2 cut(s) 87, 256
NlaIII CATG 4 cut(s) 124, 175, 210, 320
NlaIV GGNNCC 2 cut(s) 131, 147
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 94, 135, 304
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 2 cut(s) 235, 245
PluTI GGCGCC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 131, 147
PspPI GGNCC 2 cut(s) 4, 145
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 1 cut(s) 102
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 2 cut(s) 234, 244
Sau3AI GATC 2 cut(s) 87, 256
Sau96I GGNCC 2 cut(s) 4, 145
SetI ASST 7 cut(s) 45, 57, 64, 109, 117, 128, 397
SfcI CTRYAG 1 cut(s) 98
SfoI GGCGCC 1 cut(s) 131
SinI GGWCC 2 cut(s) 4, 145
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 1 cut(s) 384
SsiI CCGC 2 cut(s) 177, 244
SspDI GGCGCC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 128
TaqI TCGA 4 cut(s) 65, 90, 168, 339
TaqII GACCGA 1 cut(s) 21
TasI AATT 1 cut(s) 384
TatI WGTACW 1 cut(s) 344
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 3 cut(s) 94, 135, 304
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 4, 145
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.