AT4G05475

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000331
Physical Location & Seq
Reverse (-)
2765962 .. 2767957
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05475.1

Sequence Viewer

Length: 930 bp
ATGGCAACCTCCACTACGTTGCAGTCGTTGCTGATGAAAGAAGATGAAGAGCAAAGAAACAAGAGAAGGACAACCTCCACTATGTTTCTGAAGAAAGACGATGAAGAGCGAATCAACTGGGTGGATCTTCCGCCGGAGTTGACGACTTCGATCCTGCTCCGACTTAGCGTGACTGATATACTGGATAACGCTCGGAAACTGTGCAGAGCGTGGCGACGTATCTGTAAAGACCCTTCCATGTGGCGGAAAATCAACTTGCGAGACTGCCTCATGTACGAGTTCGATTTCGAGAGCATGTGCCGTCACATTGTTGATCTCAGCCAAGGTGGCTTGCTAGAGATTAACATTGAACACTTCGTGAGCGATTCTCTCCTCAGTTACATCGTCGATAGATCATGTAATCTGAAAAGTCTTGGAATTTCAATCTATGAACCAATGACGAACAAAGGAGTAATGAACGGAATCGAGAAACTTCCACTGCTTGAAACTCTCGTGATCTTCCACTCCTCGATTAAACTGGATTTAAAAGCAATAGGCCATGCATGCCCACAACTAAAGACATTGAAGCTAAACTCCTTAGGCTCAGAGCTGGCCCATGACATAAGCCAGGTAGGCTACATTCCCCTTCTCGAATGTGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATGGGTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGAAGAACACCTTGATGTACGCAAGTGTTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCGATGTATGAAGAGGATCAAAGAGTTGAGACGGCCCCATGACTCAACTGCGGATTACCCGTATAGTATCAGTGTGTCAATGGTGGTTCAGATGATGATTACATCTCGATATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

309

Amino Acids

35.38

Weight (kDa)

6.56

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 40 - 87 4e-10 F-box-like
F-box PF00646 40 - 83 2.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 694
AciI CCGC 3 cut(s) 131, 244, 863
AclWI GGATC 3 cut(s) 132, 145, 836
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 2 cut(s) 275, 771
AfiI CCNNNNNNNGG 2 cut(s) 243, 694
AgsI TTSAA 7 cut(s) 350, 423, 485, 565, 724, 784, 809
AjnI CCWGG 2 cut(s) 606, 750
AluBI AGCT 3 cut(s) 568, 589, 691
AluI AGCT 3 cut(s) 568, 589, 691
Alw26I GTCTC 2 cut(s) 255, 835
AlwI GGATC 3 cut(s) 132, 145, 836
AoxI GGCC 3 cut(s) 535, 591, 845
ApoI RAATTY 1 cut(s) 417
AspS9I GGNCC 2 cut(s) 592, 846
AsuHPI GGTGA 1 cut(s) 740
AxyI CCTNAGG 1 cut(s) 577
BarI GAAGNNNNNNTAC 2 cut(s) 217, 249
BauI CACGAG 1 cut(s) 491
BceAI ACGGC 2 cut(s) 285, 860
BciT130I CCWGG 2 cut(s) 608, 752
BcoDI GTCTC 2 cut(s) 255, 835
BfaI CTAG 2 cut(s) 335, 650
BglI GCCNNNNNGGC 2 cut(s) 327, 612
Bme1390I CCNGG 2 cut(s) 608, 752
BmgT120I GGNCC 2 cut(s) 592, 846
BmiI GGNNCC 1 cut(s) 848
BmrFI CCNGG 2 cut(s) 608, 752
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 634
BmuI ACTGGG 1 cut(s) 127
BoxI GACNNNNGTC 1 cut(s) 741
BplI GAGNNNNNCTC 4 cut(s) 252, 284, 352, 384
BpmI CTGGAG 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 694
Bse1I ACTGG 4 cut(s) 122, 186, 522, 721
Bse21I CCTNAGG 1 cut(s) 577
BseBI CCWGG 2 cut(s) 608, 752
BseDI CCNNGG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 243, 694
BseMII CTCAG 3 cut(s) 331, 388, 597
BseNI ACTGG 4 cut(s) 122, 186, 522, 721
BseRI GAGGAG 2 cut(s) 362, 496
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 3 cut(s) 537, 593, 847
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 243, 694
BsmAI GTCTC 2 cut(s) 255, 835
BsmBI CGTCTC 1 cut(s) 835
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 3 cut(s) 537, 593, 847
Bsp143I GATC 6 cut(s) 124, 150, 313, 392, 495, 828
BspACI CCGC 3 cut(s) 131, 244, 863
BspANI GGCC 3 cut(s) 537, 593, 847
BspCNI CTCAG 3 cut(s) 330, 387, 596
BspLI GGNNCC 1 cut(s) 848
BspPI GGATC 3 cut(s) 132, 145, 836
BspQI GCTCTTC 2 cut(s) 42, 99
BsrI ACTGG 4 cut(s) 122, 186, 522, 721
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 6 cut(s) 124, 150, 313, 392, 495, 828
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 608, 752
Bst4CI ACNGT 2 cut(s) 201, 740
Bst6I CTCTTC 3 cut(s) 42, 99, 818
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 4 cut(s) 332, 544, 591, 668
BstDEI CTNAG 5 cut(s) 164, 317, 374, 577, 583
BstKTI GATC 6 cut(s) 127, 153, 316, 395, 498, 831
BstMAI GTCTC 2 cut(s) 255, 835
BstMBI GATC 6 cut(s) 124, 150, 313, 392, 495, 828
BstMWI GCNNNNNNNGC 4 cut(s) 28, 327, 543, 612
BstNI CCWGG 2 cut(s) 608, 752
BstNSI RCATGY 3 cut(s) 298, 546, 670
BstPAI GACNNNNGTC 1 cut(s) 741
BstSCI CCNGG 2 cut(s) 606, 750
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 577
BsuRI GGCC 3 cut(s) 537, 593, 847
BtgZI GCGATG 1 cut(s) 829
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 3 cut(s) 476, 714, 889
Cac8I GCNNGC 4 cut(s) 332, 544, 591, 668
Cfr13I GGNCC 2 cut(s) 592, 846
Csp6I GTAC 2 cut(s) 274, 770
CviAII CATG 9 cut(s) 238, 271, 295, 396, 539, 543, 596, 667, 851
CviQI GTAC 2 cut(s) 274, 770
DdeI CTNAG 5 cut(s) 164, 317, 374, 577, 583
DpnI GATC 6 cut(s) 126, 152, 315, 394, 497, 830
DpnII GATC 6 cut(s) 124, 150, 313, 392, 495, 828
DraI TTTAAA 1 cut(s) 525
DraIII CACNNNGTG 1 cut(s) 358
Eam1104I CTCTTC 3 cut(s) 42, 99, 818
EarI CTCTTC 3 cut(s) 42, 99, 818
EciI GGCGGA 2 cut(s) 120, 259
Eco130I CCWWGG 1 cut(s) 322
Eco32I GATATC 1 cut(s) 923
Eco57I CTGAAG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 577
EcoRII CCWGG 2 cut(s) 606, 750
EcoRV GATATC 1 cut(s) 923
EcoT14I CCWWGG 1 cut(s) 322
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 9 cut(s) 241, 274, 298, 399, 542, 546, 599, 670, 854
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FatI CATG 9 cut(s) 237, 270, 294, 395, 538, 542, 595, 666, 850
FspBI CTAG 2 cut(s) 335, 650
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 3 cut(s) 537, 593, 847
HapII CCGG 1 cut(s) 134
Hin1II CATG 9 cut(s) 241, 274, 298, 399, 542, 546, 599, 670, 854
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 5 cut(s) 111, 365, 462, 802, 854
HpaII CCGG 1 cut(s) 134
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 6 cut(s) 90, 161, 195, 405, 586, 903
Hpy188III TCNNGA 9 cut(s) 289, 358, 466, 493, 629, 734, 799, 806, 918
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 2 cut(s) 219, 389
HpyAV CCTTC 3 cut(s) 60, 243, 635
HpyCH4III ACNGT 2 cut(s) 201, 740
HpyCH4IV ACGT 2 cut(s) 17, 217
HpyCH4V TGCA 3 cut(s) 22, 204, 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 327, 543, 612
HpyF3I CTNAG 5 cut(s) 164, 317, 374, 577, 583
HpySE526I ACGT 2 cut(s) 17, 217
Hsp92II CATG 9 cut(s) 241, 274, 298, 399, 542, 546, 599, 670, 854
Kzo9I GATC 6 cut(s) 124, 150, 313, 392, 495, 828
LguI GCTCTTC 2 cut(s) 42, 99
LmnI GCTCC 1 cut(s) 162
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 335, 650
MaeII ACGT 2 cut(s) 17, 217
MaeIII GTNAC 4 cut(s) 169, 302, 377, 698
MalI GATC 6 cut(s) 126, 152, 315, 394, 497, 830
MboI GATC 6 cut(s) 124, 150, 313, 392, 495, 828
MboII GAAGA 8 cut(s) 53, 59, 103, 116, 119, 490, 767, 835
MflI RGATCY 1 cut(s) 124
MluCI AATT 1 cut(s) 417
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 8 cut(s) 19, 85, 278, 383, 517, 695, 756, 819
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 4 cut(s) 342, 513, 524, 789
MslI CAYNNNNRTG 1 cut(s) 765
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 608, 752
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 2 cut(s) 608, 752
MwoI GCNNNNNNNGC 4 cut(s) 28, 327, 543, 612
NdeII GATC 6 cut(s) 124, 150, 313, 392, 495, 828
NlaIII CATG 9 cut(s) 241, 274, 298, 399, 542, 546, 599, 670, 854
NlaIV GGNNCC 1 cut(s) 848
NmuCI GTSAC 2 cut(s) 169, 302
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 3 cut(s) 298, 546, 670
PaeI GCATGC 2 cut(s) 546, 670
PciSI GCTCTTC 2 cut(s) 42, 99
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 730
PfeI GAWTC 4 cut(s) 111, 365, 462, 802
PflMI CCANNNNNTGG 1 cut(s) 694
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
PshAI GACNNNNGTC 1 cut(s) 741
Psp6I CCWGG 2 cut(s) 606, 750
PspGI CCWGG 2 cut(s) 606, 750
PspN4I GGNNCC 1 cut(s) 848
PspPI GGNCC 2 cut(s) 592, 846
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 275, 771
RsaNI GTAC 2 cut(s) 274, 770
RseI CAYNNNNRTG 1 cut(s) 765
SapI GCTCTTC 2 cut(s) 42, 99
SaqAI TTAA 4 cut(s) 342, 513, 524, 789
Sau3AI GATC 6 cut(s) 124, 150, 313, 392, 495, 828
Sau96I GGNCC 2 cut(s) 592, 846
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 2 cut(s) 608, 752
SfaNI GCATC 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 765
SphI GCATGC 2 cut(s) 546, 670
Sse9I AATT 1 cut(s) 417
SsiI CCGC 3 cut(s) 131, 244, 863
SspMI CTAG 2 cut(s) 335, 650
StyD4I CCNGG 2 cut(s) 606, 750
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 201, 740
TaiI ACGT 2 cut(s) 20, 220
TaqI TCGA 8 cut(s) 149, 282, 288, 387, 465, 509, 630, 919
TasI AATT 1 cut(s) 417
TfiI GAWTC 4 cut(s) 111, 365, 462, 802
Tru1I TTAA 4 cut(s) 342, 513, 524, 789
Tru9I TTAA 4 cut(s) 342, 513, 524, 789
TscAI CASTG 3 cut(s) 483, 721, 889
TseFI GTSAC 2 cut(s) 169, 302
Tsp45I GTSAC 2 cut(s) 169, 302
TspDTI ATGAA 6 cut(s) 50, 60, 117, 444, 470, 836
TspGWI ACGGA 2 cut(s) 474, 717
TspRI CASTG 3 cut(s) 483, 721, 889
Van91I CCANNNNNTGG 1 cut(s) 694
XapI RAATTY 1 cut(s) 417
XceI RCATGY 3 cut(s) 298, 546, 670
XspI CTAG 2 cut(s) 335, 650
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.