Rroxscaffold_2G00139420

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000331
Physical Location & Seq
Forward (+)
77826808 .. 77828314
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139420.1

Sequence Viewer

Length: 489 bp
ATGGCACCGAAACTTCCGCTGCTGGAGCACCTTGAAATTTCTTTCAGCTTTGCCTCTGCTCAATCTTTGGAAGTGATTGGGCGCTTTTGCCCTCTTTTGAAATCACTCAAACTGAACAAATATGGGTACAGATACCCGTATCATGAGTGCGATGATGATGCACTTGCTATAGCGTCCACAATGCATGATCTACACCACCTGCAGCTTTGCGGTAATAAGCTGACCAAAGATGGCTTGCAGAAAATCCTTGATTGTTGTCCAAATCTTCAGTCACTTGATCTGCACAAGTGTTTCAATATCAATTTCGGGGTAGTTTCGAAAAGAAGATGCAGTAAACGAATTAAAAGTTTACGGCTTCCTGATGATTCCACCGATGACTATGAGTTTGATCGTGCAAATCGTAGGGAGTTATATGCTCAAACCCATTGCGACCCAGATTATGGTAACTTCCTCCTATTCGGACGTTCCCTTTTTGGTCGAGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

162

Amino Acids

18.75

Weight (kDa)

7.6

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 49 - 123 7.3e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 440
AciI CCGC 2 cut(s) 17, 210
AcsI RAATTY 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 3 cut(s) 35, 100, 295
AluBI AGCT 3 cut(s) 48, 205, 220
AluI AGCT 3 cut(s) 48, 205, 220
Alw21I GWGCWC 1 cut(s) 30
ApeKI GCWGC 2 cut(s) 19, 202
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 4 cut(s) 254, 286, 368, 400
AspLEI GCGC 1 cut(s) 84
AsuII TTCGAA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 6, 214
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 368
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BfmI CTRYAG 2 cut(s) 168, 200
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 2 cut(s) 20, 203
BlsI GCNGC 2 cut(s) 21, 204
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 148, 317
BpmI CTGGAG 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 424
BseXI GCAGC 2 cut(s) 6, 214
BsgI GTGCAG 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 3 cut(s) 187, 277, 388
BspACI CCGC 2 cut(s) 17, 210
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 424
BssMI GATC 3 cut(s) 187, 277, 388
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 3 cut(s) 190, 280, 391
BstMBI GATC 3 cut(s) 187, 277, 388
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 168, 200
BstV1I GCAGC 2 cut(s) 6, 214
BtgZI GCGATG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 236
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 84
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 143, 185
CviJI RGCY 5 cut(s) 48, 205, 220, 234, 355
CviKI_1 RGCY 5 cut(s) 48, 205, 220, 234, 355
CviQI GTAC 1 cut(s) 127
DpnI GATC 3 cut(s) 189, 279, 390
DpnII GATC 3 cut(s) 187, 277, 388
Eco57I CTGAAG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 186
FaeI CATG 2 cut(s) 146, 188
FaiI YATR 8 cut(s) 123, 144, 170, 186, 381, 412, 414, 441
FatI CATG 2 cut(s) 142, 184
Fnu4HI GCNGC 2 cut(s) 20, 203
Fsp4HI GCNGC 2 cut(s) 20, 203
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 20, 203
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 85
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 146, 188
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 365
Hpy166II GTNNAC 3 cut(s) 177, 335, 350
Hpy188I TCNGA 1 cut(s) 461
Hpy188III TCNNGA 3 cut(s) 143, 359, 479
Hpy8I GTNNAC 3 cut(s) 177, 335, 350
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 7 cut(s) 161, 184, 202, 238, 283, 330, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 2 cut(s) 146, 188
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 187, 277, 388
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 8, 212, 372, 447
Lsp1109I GCAGC 2 cut(s) 6, 214
LweI GCATC 2 cut(s) 148, 317
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 2 cut(s) 270, 443
MalI GATC 3 cut(s) 189, 279, 390
MboI GATC 3 cut(s) 187, 277, 388
MboII GAAGA 2 cut(s) 257, 336
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 3 cut(s) 36, 301, 339
MnlI CCTC 3 cut(s) 64, 102, 461
Mph1103I ATGCAT 1 cut(s) 186
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 3 cut(s) 187, 277, 388
NlaIII CATG 2 cut(s) 146, 188
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 186
NspV TTCGAA 1 cut(s) 317
PagI TCATGA 1 cut(s) 142
PaqCI CACCTGC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 397
PfeI GAWTC 1 cut(s) 365
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 21, 204
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 204
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 20, 203
Sau3AI GATC 3 cut(s) 187, 277, 388
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 33, 50, 201, 207, 222, 466
SfaNI GCATC 2 cut(s) 148, 317
SfcI CTRYAG 2 cut(s) 168, 200
SfuI TTCGAA 1 cut(s) 317
Sse9I AATT 3 cut(s) 36, 301, 339
SsiI CCGC 2 cut(s) 17, 210
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 317, 478
TasI AATT 3 cut(s) 36, 301, 339
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 19, 202
Tsp45I GTSAC 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 440
XapI RAATTY 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.