RLG00000032174

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000331
Physical Location & Seq
Forward (+)
11803611 .. 11805211
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032174

Sequence Viewer

Length: 750 bp
ATGTCGTCGATACTGGCACGTCTCGGAGCGATCAAGATCCTGCAGACTGCTCAGAAGGTTTGCACGACGTGGCGCACAATCGACATGAGTAATAAGTGGAGCTTCCCAAGCGATCAGCCTTTCGAGTTGGATAAGATGTGTCGTCACGCCATTGATCGCAGCTGTGGCAGTCTTGTTGAAATCAAACTCCAGAACTTCGACCTTGAAATTTCAGTATGTGGTGGTTACATCTCACATAAAACTGTGGAAGTGGTTGGACAAGCCTGCCCTCTCTTGAAATCATTCAAACTGAACTGTTTTAGATTTATGCTCAACAAAAAGAACTTGAGGCTAAGTTTGACAACACGCGATGACTTGAGGGAAAGTTTGAGAACATGTGATGAGGAAGCACTTGCTATATCAAGAACAATGCAGGATTTACACCACCCCAAGCTTGTCGGAAATAGGCTGACTAATGATGGCTTGAGGAAAATTATTGATTCTTGTACTAATCTCGAGTCACTTGATTTGCGTTGCTGTTACCATCTTAATCTAGCAGAAGATTTGGGAAGAAGATGTGCTGAACAAATTAAAAGCTTGCGGCTTCCCAACGATTCCGTTGACGACATGGACTATCTTTCTTCAACTACAGTTAATTGTCACATAGCACCTTACAAGGATGACTACTCAGATTTTGATGAGGAGGAGGATGACGACTCAGAGTTTGATGATGAGGAGGACTACATAGATATTAAGGCTCTGATCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

250

Amino Acids

28.55

Weight (kDa)

4.88

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 580
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 69
AfaI GTAC 1 cut(s) 487
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 5 cut(s) 179, 206, 277, 286, 624
AjiI CACGTC 2 cut(s) 20, 69
AluBI AGCT 4 cut(s) 102, 162, 433, 576
AluI AGCT 4 cut(s) 102, 162, 433, 576
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 207
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 494
BbvI GCAGC 1 cut(s) 171
BccI CCATC 2 cut(s) 452, 531
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 2 cut(s) 41, 627
BisI GCNGC 2 cut(s) 160, 581
BlsI GCNGC 2 cut(s) 161, 582
BmeT110I CYCGRG 1 cut(s) 494
BmgBI CACGTC 2 cut(s) 20, 69
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 3 cut(s) 346, 376, 484
BsaBI GATNNNNATC 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 35
BseGI GGATG 2 cut(s) 664, 694
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 3 cut(s) 65, 681, 711
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 3 cut(s) 695, 698, 728
BseXI GCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 5 cut(s) 30, 36, 112, 154, 741
BspACI CCGC 1 cut(s) 580
BspCNI CTCAG 3 cut(s) 64, 680, 710
BspFNI CGCG 1 cut(s) 348
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 18
BssMI GATC 5 cut(s) 30, 36, 112, 154, 741
Bst4CI ACNGT 3 cut(s) 244, 296, 631
BstC8I GCNNGC 2 cut(s) 265, 578
BstDEI CTNAG 4 cut(s) 51, 332, 667, 697
BstF5I GGATG 2 cut(s) 664, 694
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 5 cut(s) 33, 39, 115, 157, 744
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 5 cut(s) 30, 36, 112, 154, 741
BstMWI GCNNNNNNNGC 2 cut(s) 108, 165
BstNSI RCATGY 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 41, 627
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 363
BtrI CACGTC 2 cut(s) 20, 69
BtsCI GGATG 2 cut(s) 664, 694
Cac8I GCNNGC 2 cut(s) 265, 578
CfoI GCGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 486
CviAII CATG 3 cut(s) 85, 375, 607
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 4 cut(s) 51, 332, 667, 697
DpnI GATC 5 cut(s) 32, 38, 114, 156, 743
DpnII GATC 5 cut(s) 30, 36, 112, 154, 741
DraIII CACNNNGTG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 494
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 3 cut(s) 88, 378, 610
FaiI YATR 9 cut(s) 86, 217, 237, 308, 376, 398, 608, 644, 725
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FatI CATG 3 cut(s) 84, 374, 606
Fnu4HI GCNGC 2 cut(s) 160, 581
FokI GGATG 2 cut(s) 671, 701
Fsp4HI GCNGC 2 cut(s) 160, 581
FspBI CTAG 1 cut(s) 533
GlaI GCGC 1 cut(s) 74
GluI GCNGC 2 cut(s) 160, 581
GsuI CTGGAG 1 cut(s) 173
HhaI GCGC 1 cut(s) 75
Hin1II CATG 3 cut(s) 88, 378, 610
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 2 cut(s) 431, 574
HinfI GANTC 4 cut(s) 479, 497, 593, 695
Hpy166II GTNNAC 1 cut(s) 601
Hpy188I TCNGA 6 cut(s) 26, 54, 440, 670, 700, 741
Hpy188III TCNNGA 5 cut(s) 34, 190, 274, 402, 494
Hpy8I GTNNAC 1 cut(s) 601
Hpy99I CGWCG 2 cut(s) 10, 70
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 3 cut(s) 244, 296, 631
HpyCH4IV ACGT 2 cut(s) 19, 68
HpyCH4V TGCA 3 cut(s) 43, 63, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 165
HpyF3I CTNAG 4 cut(s) 51, 332, 667, 697
HpySE526I ACGT 2 cut(s) 19, 68
Hsp92II CATG 3 cut(s) 88, 378, 610
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 30, 36, 112, 154, 741
LmnI GCTCC 2 cut(s) 26, 99
LpnPI CCDG 4 cut(s) 53, 203, 277, 398
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 19, 68
MaeIII GTNAC 5 cut(s) 143, 224, 498, 518, 638
MalI GATC 5 cut(s) 32, 38, 114, 156, 743
MboI GATC 5 cut(s) 30, 36, 112, 154, 741
MboII GAAGA 4 cut(s) 551, 561, 564, 612
MflI RGATCY 1 cut(s) 36
MluCI AATT 4 cut(s) 207, 471, 567, 634
MlyI GAGTC 2 cut(s) 506, 689
MmeI TCCRAC 3 cut(s) 108, 235, 418
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 4 cut(s) 528, 570, 633, 732
MspA1I CMGCKG 1 cut(s) 162
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 108, 165
NdeII GATC 5 cut(s) 30, 36, 112, 154, 741
NlaIII CATG 3 cut(s) 88, 378, 610
NmuCI GTSAC 3 cut(s) 143, 498, 638
NspI RCATGY 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 494
PciI ACATGT 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 479, 593
PkrI GCNGC 2 cut(s) 161, 582
PleI GAGTC 2 cut(s) 505, 689
PpsI GAGTC 2 cut(s) 505, 689
PscI ACATGT 1 cut(s) 374
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SaqAI TTAA 4 cut(s) 528, 570, 633, 732
SatI GCNGC 2 cut(s) 160, 581
Sau3AI GATC 5 cut(s) 30, 36, 112, 154, 741
SchI GAGTC 2 cut(s) 506, 689
SetI ASST 9 cut(s) 22, 60, 71, 104, 164, 204, 435, 578, 652
SfcI CTRYAG 2 cut(s) 41, 627
Sfr274I CTCGAG 1 cut(s) 494
SlaI CTCGAG 1 cut(s) 494
SmlI CTYRAG 4 cut(s) 325, 355, 463, 494
SmoI CTYRAG 4 cut(s) 325, 355, 463, 494
Sse9I AATT 4 cut(s) 207, 471, 567, 634
SsiI CCGC 1 cut(s) 580
SspMI CTAG 1 cut(s) 533
TaaI ACNGT 3 cut(s) 244, 296, 631
TaiI ACGT 2 cut(s) 22, 71
TaqI TCGA 6 cut(s) 8, 81, 123, 198, 495, 744
TasI AATT 4 cut(s) 207, 471, 567, 634
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 2 cut(s) 479, 593
Tru1I TTAA 4 cut(s) 528, 570, 633, 732
Tru9I TTAA 4 cut(s) 528, 570, 633, 732
TseFI GTSAC 3 cut(s) 143, 498, 638
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 3 cut(s) 143, 498, 638
TspGWI ACGGA 1 cut(s) 586
XapI RAATTY 1 cut(s) 207
XceI RCATGY 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.