RLG00000021713

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000331
Physical Location & Seq
Reverse (-)
77444080 .. 77445012
933 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021713

Sequence Viewer

Length: 843 bp
ATGGACCGAAACCAAGAACAAAACTGCCGGAACTGGATTGACCTTCCACACGACCTCACCGCTTCGATATTATCACGGCTGGGAGTGATCGAGATTCTGGAGACAGCTCAGAAGGTGTGCATGACGTGGCGCCGAATCTGCAAGGACCCGATGATGTGGCGCACCATCCACATGTGCGGTGTTTGGGTTTGGAGCAACTCCAAATCATGGAAGAAGAATGCACGGAAGATGGCAGCGATGTGCCGCCACGCCGTTGATCTTGGCCGTGGCAATGTCGTCGATATAAGTCTCCAAAACTTCGGCACCGATCTCCTCCTTGTGGATATCACTAACAGTTGCAAGGGAATCAGACGCCTCATGCATACACAACTGAAGACCTTGAAGCCATCGGCCGTACGTTGGTGCCCTCTTTTGAAGTCACTGAAGCTCAACAAGCTCCACGATATCCGAAATGACTGGGACGGCCTTTTACTTGCTGGACTTCACCACCATTATCAGGTTTTAGGACGTAAGAGTAGTGGCGGGGTAATACACGATGATGGCGATGCACTTGCTATAGCGGGAACAATGCATGGTTTACAACAGCTCCAGATATTTGGAAATAGGGTGACTAACAAGTGCTTGCAAGCCATTCTTGATGGTTGTCCATGTCTTGAGTCACTTGATCTGCGTCGTTGTTTCAATCTTAAGGTGGAAGGAGATTTGAAGAGAAGGTGCTTTCAAGGAATTAAACAGTTGCGGCTTCCCGATGATTCTACAGATGACTATGAACTTGTTGCCACAGATAAAATTGTTTACCAAATGTACCGGTCTTTTCGGAGTACATTAAATTTAATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

281

Amino Acids

32.16

Weight (kDa)

9.24

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 57 2.4e-08 F-box-like
F-box PF00646 12 - 54 1.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 129, 302, 402
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 6 cut(s) 60, 177, 244, 522, 560, 739
AcoI YGGCCR 2 cut(s) 262, 390
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 2 cut(s) 392, 443
AcyI GRCGYC 2 cut(s) 130, 352
AfaI GTAC 3 cut(s) 396, 806, 823
AfiI CCNNNNNNNGG 4 cut(s) 207, 319, 399, 496
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 171
AgeI ACCGGT 1 cut(s) 807
AgsI TTSAA 5 cut(s) 382, 415, 682, 706, 722
AjiI CACGTC 1 cut(s) 126
AluBI AGCT 4 cut(s) 107, 427, 436, 586
AluI AGCT 4 cut(s) 107, 427, 436, 586
Alw26I GTCTC 2 cut(s) 95, 293
AoxI GGCC 3 cut(s) 262, 390, 463
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 829
AsiGI ACCGGT 1 cut(s) 807
AspLEI GCGC 2 cut(s) 132, 162
AspS9I GGNCC 2 cut(s) 4, 145
AsuHPI GGTGA 3 cut(s) 49, 476, 619
AvaII GGWCC 2 cut(s) 4, 145
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 3 cut(s) 129, 302, 402
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 245
BccI CCATC 5 cut(s) 173, 223, 394, 533, 632
BceAI ACGGC 5 cut(s) 92, 236, 249, 377, 478
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 533, 567
BcoDI GTCTC 2 cut(s) 95, 293
BfmI CTRYAG 2 cut(s) 555, 756
BfoI RGCGCY 1 cut(s) 133
BfrI CTTAAG 1 cut(s) 686
BisI GCNGC 3 cut(s) 234, 244, 740
BlsI GCNGC 3 cut(s) 235, 245, 741
Bme18I GGWCC 2 cut(s) 4, 145
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 4, 145
BmiI GGNNCC 4 cut(s) 131, 147, 304, 404
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 1 cut(s) 535
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 2 cut(s) 119, 572
BpuEI CTTGAG 1 cut(s) 674
BsaHI GRCGYC 2 cut(s) 130, 352
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 807
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 319, 399, 496
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 2 cut(s) 38, 461
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 4 cut(s) 207, 319, 399, 496
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 38, 461
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 407
BseX3I CGGCCG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 3 cut(s) 264, 392, 465
BshNI GGYRCC 3 cut(s) 129, 302, 402
BshTI ACCGGT 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 393
BsiSI CCGG 2 cut(s) 28, 808
BsiWI CGTACG 1 cut(s) 394
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 4 cut(s) 207, 319, 399, 496
BsmAI GTCTC 2 cut(s) 95, 293
BsmFI GGGAC 1 cut(s) 473
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 264, 392, 465
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 4 cut(s) 87, 256, 307, 664
BspACI CCGC 6 cut(s) 60, 177, 244, 522, 560, 739
BspANI GGCC 3 cut(s) 264, 392, 465
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 4 cut(s) 131, 147, 304, 404
BspT107I GGYRCC 3 cut(s) 129, 302, 402
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 2 cut(s) 38, 461
BssAI RCCGGY 1 cut(s) 807
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 4 cut(s) 87, 256, 307, 664
BssNI GRCGYC 2 cut(s) 130, 352
Bst4CI ACNGT 2 cut(s) 335, 735
Bst6I CTCTTC 1 cut(s) 701
BstACI GRCGYC 2 cut(s) 130, 352
BstAFI CTTAAG 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 623, 627
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 132, 162
BstKTI GATC 4 cut(s) 90, 259, 310, 667
BstMAI GTCTC 2 cut(s) 95, 293
BstMBI GATC 4 cut(s) 87, 256, 307, 664
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 2 cut(s) 138, 433
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 555, 756
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 596
BstZI CGGCCG 1 cut(s) 390
BsuRI GGCC 3 cut(s) 264, 392, 465
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 2 cut(s) 251, 558
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 623, 627
CfoI GCGC 2 cut(s) 132, 162
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 2 cut(s) 4, 145
CseI GACGC 2 cut(s) 360, 659
Csp6I GTAC 3 cut(s) 395, 805, 822
CspAI ACCGGT 1 cut(s) 807
CviAII CATG 6 cut(s) 121, 172, 207, 358, 572, 648
CviQI GTAC 3 cut(s) 395, 805, 822
DdeI CTNAG 1 cut(s) 108
DinI GGCGCC 1 cut(s) 131
DpnI GATC 4 cut(s) 89, 258, 309, 666
DpnII GATC 4 cut(s) 87, 256, 307, 664
EaeI YGGCCR 2 cut(s) 262, 390
EagI CGGCCG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
EclXI CGGCCG 1 cut(s) 390
Eco32I GATATC 2 cut(s) 325, 445
Eco47I GGWCC 2 cut(s) 4, 145
Eco52I CGGCCG 1 cut(s) 390
Eco57I CTGAAG 2 cut(s) 392, 443
EcoO109I RGGNCCY 1 cut(s) 145
EcoRV GATATC 2 cut(s) 325, 445
EcoT22I ATGCAT 2 cut(s) 363, 573
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
FaeI CATG 6 cut(s) 124, 175, 210, 361, 575, 651
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 1 cut(s) 473
FatI CATG 6 cut(s) 120, 171, 206, 357, 571, 647
FauI CCCGC 2 cut(s) 515, 553
Fnu4HI GCNGC 3 cut(s) 234, 244, 740
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 234, 244, 740
GlaI GCGC 2 cut(s) 131, 161
GluI GCNGC 3 cut(s) 234, 244, 740
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 2 cut(s) 119, 572
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 3 cut(s) 264, 392, 465
HapII CCGG 2 cut(s) 28, 808
HgaI GACGC 2 cut(s) 360, 659
HhaI GCGC 2 cut(s) 132, 162
Hin1I GRCGYC 2 cut(s) 130, 352
Hin1II CATG 6 cut(s) 124, 175, 210, 361, 575, 651
Hin6I GCGC 2 cut(s) 130, 160
HinP1I GCGC 2 cut(s) 130, 160
HinfI GANTC 5 cut(s) 94, 135, 345, 656, 752
HpaII CCGG 2 cut(s) 28, 808
HphI GGTGA 3 cut(s) 49, 476, 619
Hpy166II GTNNAC 2 cut(s) 578, 796
Hpy188I TCNGA 4 cut(s) 111, 350, 449, 819
Hpy188III TCNNGA 6 cut(s) 91, 98, 589, 635, 653, 746
Hpy8I GTNNAC 2 cut(s) 578, 796
Hpy99I CGWCG 2 cut(s) 281, 675
HpyAV CCTTC 4 cut(s) 53, 106, 689, 705
HpyCH4III ACNGT 2 cut(s) 335, 735
HpyCH4IV ACGT 3 cut(s) 125, 397, 508
HpyCH4V TGCA 8 cut(s) 120, 141, 221, 339, 361, 548, 571, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 433
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 3 cut(s) 125, 397, 508
Hsp92I GRCGYC 2 cut(s) 130, 352
Hsp92II CATG 6 cut(s) 124, 175, 210, 361, 575, 651
HspAI GCGC 2 cut(s) 130, 160
KasI GGCGCC 1 cut(s) 129
Kzo9I GATC 4 cut(s) 87, 256, 307, 664
LmnI GCTCC 3 cut(s) 192, 441, 591
LpnPI CCDG 9 cut(s) 19, 41, 65, 83, 442, 462, 482, 602, 821
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 535
MaeII ACGT 3 cut(s) 125, 397, 508
MaeIII GTNAC 3 cut(s) 417, 607, 657
MalI GATC 4 cut(s) 89, 258, 309, 666
MboI GATC 4 cut(s) 87, 256, 307, 664
MboII GAAGA 5 cut(s) 223, 226, 238, 385, 718
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 3 cut(s) 726, 789, 829
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 1 cut(s) 665
MnlI CCTC 4 cut(s) 65, 323, 365, 417
Mph1103I ATGCAT 2 cut(s) 363, 573
MseI TTAA 4 cut(s) 687, 729, 827, 833
MslI CAYNNNNRTG 2 cut(s) 170, 537
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 2 cut(s) 28, 808
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 138, 433
NarI GGCGCC 1 cut(s) 130
NdeII GATC 4 cut(s) 87, 256, 307, 664
NlaIII CATG 6 cut(s) 124, 175, 210, 361, 575, 651
NlaIV GGNNCC 4 cut(s) 131, 147, 304, 404
NmuCI GTSAC 3 cut(s) 417, 607, 657
NsiI ATGCAT 2 cut(s) 363, 573
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 4 cut(s) 94, 135, 345, 752
Pfl23II CGTACG 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 807
PkrI GCNGC 3 cut(s) 235, 245, 741
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 664
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 79
PspLI CGTACG 1 cut(s) 394
PspN4I GGNNCC 4 cut(s) 131, 147, 304, 404
PspPI GGNCC 2 cut(s) 4, 145
PspPPI RGGWCCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 396, 806, 823
RsaNI GTAC 3 cut(s) 395, 805, 822
RseI CAYNNNNRTG 2 cut(s) 170, 537
SaqAI TTAA 4 cut(s) 687, 729, 827, 833
SatI GCNGC 3 cut(s) 234, 244, 740
Sau3AI GATC 4 cut(s) 87, 256, 307, 664
Sau96I GGNCC 2 cut(s) 4, 145
SchI GAGTC 1 cut(s) 665
SduI GDGCHC 1 cut(s) 407
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 555, 756
SfoI GGCGCC 1 cut(s) 131
SinI GGWCC 2 cut(s) 4, 145
SmiMI CAYNNNNRTG 2 cut(s) 170, 537
SmlI CTYRAG 2 cut(s) 653, 686
SmoI CTYRAG 2 cut(s) 653, 686
Sse9I AATT 3 cut(s) 726, 789, 829
SsiI CCGC 6 cut(s) 60, 177, 244, 522, 560, 739
SspDI GGCGCC 1 cut(s) 129
TaaI ACNGT 2 cut(s) 335, 735
TaiI ACGT 3 cut(s) 128, 400, 511
TaqI TCGA 3 cut(s) 65, 90, 279
TaqII GACCGA 1 cut(s) 21
TasI AATT 3 cut(s) 726, 789, 829
TatI WGTACW 1 cut(s) 821
TauI GCSGC 2 cut(s) 246, 742
TfiI GAWTC 4 cut(s) 94, 135, 345, 752
Tru1I TTAA 4 cut(s) 687, 729, 827, 833
Tru9I TTAA 4 cut(s) 687, 729, 827, 833
TscAI CASTG 1 cut(s) 426
TseFI GTSAC 3 cut(s) 417, 607, 657
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 3 cut(s) 417, 607, 657
TspDTI ATGAA 1 cut(s) 783
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 1 cut(s) 426
Van91I CCANNNNNTGG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 4, 145
XapI RAATTY 1 cut(s) 829
XceI RCATGY 1 cut(s) 175
Zsp2I ATGCAT 2 cut(s) 363, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.