Rroxscaffold_1G00061210

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
83420806 .. 83421420
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061210.1

Sequence Viewer

Length: 228 bp
ATGGCACAAACTCGCAAGGACCCTTTCATGTGGAGCAAGATTGACATGCGAAACGATGGTGAGATTAACTATGACTTGGAGGAGATGTGCCGCCACGTCGTTGATCGGAGCTCCGGTAATCTTGTTGATATTAACATCGAGTATCTCGGCACCGATGAGCTGCTTGAATACATCACCGAAAGAAATTGTAATGTTGTAAGGCTGCAGATAATGGGGGATATAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.83

Weight (kDa)

4.43

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 1 cut(s) 91
AgsI TTSAA 1 cut(s) 167
AjiI CACGTC 1 cut(s) 97
AluBI AGCT 2 cut(s) 111, 160
AluI AGCT 2 cut(s) 111, 160
Alw21I GWGCWC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 160, 202
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 71, 166
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 147, 189
BccI CCATC 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 203
BisI GCNGC 3 cut(s) 91, 161, 203
BlsI GCNGC 3 cut(s) 92, 162, 204
Bme18I GGWCC 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 21, 151
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 4 cut(s) 71, 100, 101, 130
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 147, 189
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 21, 151
BspMAI CTGCAG 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 149
BssMI GATC 1 cut(s) 103
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 147, 189
BtrI CACGTC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 19
CviAII CATG 2 cut(s) 28, 46
CviJI RGCY 3 cut(s) 111, 160, 202
CviKI_1 RGCY 3 cut(s) 111, 160, 202
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 2 cut(s) 31, 49
FaiI YATR 4 cut(s) 29, 47, 72, 221
FatI CATG 2 cut(s) 27, 45
Fnu4HI GCNGC 3 cut(s) 91, 161, 203
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 91, 161, 203
GluI GCNGC 3 cut(s) 91, 161, 203
HapII CCGG 1 cut(s) 114
Hin1II CATG 2 cut(s) 31, 49
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 71, 166
Hpy188I TCNGA 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 2 cut(s) 31, 49
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 3 cut(s) 33, 108, 116
LpnPI CCDG 1 cut(s) 127
Lsp1109I GCAGC 2 cut(s) 147, 189
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 1 cut(s) 184
MnlI CCTC 1 cut(s) 73
MseI TTAA 2 cut(s) 66, 132
MspI CCGG 1 cut(s) 114
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 31, 49
NlaIV GGNNCC 2 cut(s) 21, 151
NmeAIII GCCGAG 1 cut(s) 126
NspI RCATGY 1 cut(s) 49
PkrI GCNGC 3 cut(s) 92, 162, 204
PpuMI RGGWCCY 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 21, 151
PspPI GGNCC 1 cut(s) 19
PspPPI RGGWCCY 1 cut(s) 19
PstI CTGCAG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 66, 132
SatI GCNGC 3 cut(s) 91, 161, 203
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 113
SetI ASST 3 cut(s) 99, 113, 162
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 19
Sse9I AATT 1 cut(s) 184
SsiI CCGC 1 cut(s) 91
SstI GAGCTC 1 cut(s) 113
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 138
TasI AATT 1 cut(s) 184
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 66, 132
Tru9I TTAA 2 cut(s) 66, 132
TseI GCWGC 2 cut(s) 160, 202
TspDTI ATGAA 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 19
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.