Rmu_co8502117.1_g000002

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8502117.1
OG0000331
Physical Location & Seq
Reverse (-)
1392 .. 2929
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8502117.1_g000002.1.cds

Sequence Viewer

Length: 846 bp
atggtctggcgcaccatcgacatggccaacgatcactttttccacgaagttcactacgatttggacaagatgtgccgccacgccgttgatcggagcttcggtcgagtggaggatatcaatgttgagtacttcggcaccgacgaattgctcaagtacatcactgatagttcaagtggaatcaaacgcctcagcttggcacattgccctagtataacagataaaggattgactgaaatggctccgaaacttccattgttggaggaccttgacattacgtcctgcaaaaatatctcacatgaacctctgaaagtgattggtagcagttgccctcttttaaaatcattcaaattggacgcgtggtttaaactaccagaagatgaggtttatgatgatacagttttcaatatcgaggaaggggatgtggaggtggaggcgaatgcagaggtaaatgccaatgcggttgcggaagtcgttatggatagggagatggatgcagatgcgcttgctatagcagggtcgatgcatggtttacaccatcttcagctttttcggaatgagctgactaatgatggcttaaatgaaattcttgatcattgtcctcttcttgagtcacttgatctgcgctattgtaacaatctcaatctgaaaggagatttgggtatcaaatgtgctgaacgtattaagagattgcagctccccgataactctactgatattcctgaaactgatcttttaaaaaaggatacagtttggttcacctaccgttcagctgatgatgttgaaggtcatgtggctgacgtcattattggcaaaacaattgatttcactgatgattatgagtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

281

Amino Acids

31.9

Weight (kDa)

4.54

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 801
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 356
AciI CCGC 3 cut(s) 76, 458, 464
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 2 cut(s) 128, 155
AfiI CCNNNNNNNGG 2 cut(s) 90, 193
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 4 cut(s) 171, 346, 403, 782
AhdI GACNNNNNGTC 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 6 cut(s) 96, 192, 544, 559, 694, 770
AluI AGCT 6 cut(s) 96, 192, 544, 559, 694, 770
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 1 cut(s) 582
AspLEI GCGC 3 cut(s) 12, 502, 624
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 748
AvaII GGWCC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 703
BccI CCATC 4 cut(s) 23, 481, 543, 563
BceAI ACGGC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 736
BclI TGATCA 1 cut(s) 589
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 507
BfuI GTATCC 1 cut(s) 736
BisI GCNGC 2 cut(s) 76, 692
BlsI GCNGC 2 cut(s) 77, 693
BmcAI AGTACT 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 262
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 136, 240
BmsI GCATC 3 cut(s) 481, 487, 510
Bpu10I CCTNAGC 1 cut(s) 188
BpuEI CTTGAG 2 cut(s) 134, 626
BsaHI GRCGYC 1 cut(s) 798
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 193
Bse3DI GCAATG 1 cut(s) 199
BseGI GGATG 2 cut(s) 424, 496
BseLI CCNNNNNNNGG 2 cut(s) 90, 193
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 90, 193
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 5 cut(s) 31, 88, 589, 616, 727
BspACI CCGC 3 cut(s) 76, 458, 464
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 356
BspLI GGNNCC 2 cut(s) 136, 240
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 199
BssMI GATC 5 cut(s) 31, 88, 589, 616, 727
BssNI GRCGYC 1 cut(s) 798
Bst4CI ACNGT 3 cut(s) 397, 748, 764
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 424, 496
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 3 cut(s) 12, 502, 624
BstKTI GATC 5 cut(s) 34, 91, 592, 619, 730
BstMBI GATC 5 cut(s) 31, 88, 589, 616, 727
BstMCI CGRYCG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 703
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuI GTATCC 1 cut(s) 736
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 424, 496
BtsIMutI CAGTG 2 cut(s) 159, 825
Cac8I GCNNGC 1 cut(s) 504
CfoI GCGC 3 cut(s) 12, 502, 624
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 127, 154
CviAII CATG 4 cut(s) 22, 296, 524, 788
CviQI GTAC 2 cut(s) 127, 154
DdeI CTNAG 1 cut(s) 188
DpnI GATC 5 cut(s) 33, 90, 591, 618, 729
DpnII GATC 5 cut(s) 31, 88, 589, 616, 727
DraI TTTAAA 3 cut(s) 336, 364, 735
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 606
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 606
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 262
EcoRV GATATC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 525
FaeI CATG 4 cut(s) 25, 299, 527, 791
FaiI YATR 9 cut(s) 23, 212, 297, 387, 476, 509, 525, 789, 837
FatI CATG 4 cut(s) 21, 295, 523, 787
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 2 cut(s) 76, 692
FokI GGATG 2 cut(s) 431, 503
Fsp4HI GCNGC 2 cut(s) 76, 692
FspBI CTAG 1 cut(s) 207
GlaI GCGC 3 cut(s) 11, 501, 623
GluI GCNGC 2 cut(s) 76, 692
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 1 cut(s) 362
HhaI GCGC 3 cut(s) 12, 502, 624
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 4 cut(s) 25, 299, 527, 791
Hin6I GCGC 3 cut(s) 10, 500, 622
HinP1I GCGC 3 cut(s) 10, 500, 622
HinfI GANTC 2 cut(s) 177, 608
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 3 cut(s) 52, 530, 756
Hpy188I TCNGA 5 cut(s) 93, 243, 306, 552, 645
Hpy188III TCNNGA 3 cut(s) 587, 605, 719
Hpy8I GTNNAC 3 cut(s) 52, 530, 756
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 407, 776
HpyCH4III ACNGT 3 cut(s) 397, 748, 764
HpyCH4IV ACGT 3 cut(s) 275, 676, 798
HpyCH4V TGCA 5 cut(s) 282, 440, 494, 523, 691
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 3 cut(s) 275, 676, 798
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 4 cut(s) 25, 299, 527, 791
HspAI GCGC 3 cut(s) 10, 500, 622
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 5 cut(s) 31, 88, 589, 616, 727
LmnI GCTCC 3 cut(s) 93, 244, 699
LpnPI CCDG 4 cut(s) 292, 384, 498, 732
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 3 cut(s) 481, 487, 510
MaeI CTAG 1 cut(s) 207
MaeII ACGT 3 cut(s) 275, 676, 798
MaeIII GTNAC 2 cut(s) 609, 629
MalI GATC 5 cut(s) 33, 90, 591, 618, 729
MboI GATC 5 cut(s) 31, 88, 589, 616, 727
MboII GAAGA 3 cut(s) 386, 530, 593
MfeI CAATTG 1 cut(s) 816
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 4 cut(s) 143, 347, 582, 816
MluI ACGCGT 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 237
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 525
MscI TGGCCA 1 cut(s) 26
MseI TTAA 5 cut(s) 335, 363, 575, 681, 734
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 770
MssI GTTTAAAC 1 cut(s) 364
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 442
MvnI CGCG 1 cut(s) 356
NdeII GATC 5 cut(s) 31, 88, 589, 616, 727
NlaIII CATG 4 cut(s) 25, 299, 527, 791
NlaIV GGNNCC 2 cut(s) 136, 240
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 77, 693
PleI GAGTC 1 cut(s) 616
PmeI GTTTAAAC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 616
PpuMI RGGWCCY 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 136, 240
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 2 cut(s) 128, 155
RsaNI GTAC 2 cut(s) 127, 154
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 5 cut(s) 335, 363, 575, 681, 734
SatI GCNGC 2 cut(s) 76, 692
Sau3AI GATC 5 cut(s) 31, 88, 589, 616, 727
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 1 cut(s) 617
SfaNI GCATC 3 cut(s) 481, 487, 510
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 149, 605
SmoI CTYRAG 2 cut(s) 149, 605
Sse9I AATT 4 cut(s) 143, 347, 582, 816
SsiI CCGC 3 cut(s) 76, 458, 464
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 397, 748, 764
TaiI ACGT 3 cut(s) 278, 679, 801
TaqI TCGA 4 cut(s) 18, 103, 408, 518
TaqII GACCGA 1 cut(s) 89
TasI AATT 4 cut(s) 143, 347, 582, 816
TatI WGTACW 2 cut(s) 126, 153
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 5 cut(s) 335, 363, 575, 681, 734
Tru9I TTAA 5 cut(s) 335, 363, 575, 681, 734
TscAI CASTG 2 cut(s) 166, 832
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 2 cut(s) 312, 594
TspRI CASTG 2 cut(s) 166, 832
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 582
XspI CTAG 1 cut(s) 207
ZraI GACGTC 1 cut(s) 799
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.