Rmu_sc0024563.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024563.1
OG0000331
Physical Location & Seq
Reverse (-)
202 .. 540
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024563.1_g000001.1.cds

Sequence Viewer

Length: 339 bp
atgggggaaccctcaaacggagccgcccggagaggacggcggcgagactggacggagctacctgagaaagcggcggagtcgatattccggcgtctgggggccattgaggttttggagaatgctcagaaggtgtgcatgaagtggcgcagaatctgcaagaacaacactcggatgtggcgcaccatcgacatgagaaatgatggtgatctccaagccatggactacgacttggaggttatgtgccgtcatgccgttgatcgtagccgtggtgagctggtcgatatcaatatcgagcacttcggcaccgatcggttgcttcattacatcactgataggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

112

Amino Acids

13.25

Weight (kDa)

8.57

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 217
AciI CCGC 4 cut(s) 24, 40, 71, 74
AcyI GRCGYC 1 cut(s) 91
AfiI CCNNNNNNNGG 3 cut(s) 17, 94, 217
AluBI AGCT 2 cut(s) 58, 274
AluI AGCT 2 cut(s) 58, 274
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 147, 180
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 215, 281
BanI GGYRCC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 2 cut(s) 191, 194
BceAI ACGGC 4 cut(s) 53, 228, 236, 249
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 39
BisI GCNGC 3 cut(s) 24, 41, 72
BlsI GCNGC 3 cut(s) 25, 42, 73
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 4 cut(s) 9, 22, 100, 304
BmrFI CCNGG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 216, 265
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 94, 217
Bse1I ACTGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 216, 265
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 17, 94, 217
BseMII CTCAG 2 cut(s) 54, 137
BseNI ACTGG 1 cut(s) 53
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 2 cut(s) 28, 88
BslI CCNNNNNNNGG 3 cut(s) 17, 94, 217
BsmAI GTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 3 cut(s) 205, 256, 307
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 4 cut(s) 24, 40, 71, 74
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 55, 136
BspLI GGNNCC 4 cut(s) 9, 22, 100, 304
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 216, 265
BssMI GATC 3 cut(s) 205, 256, 307
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 63, 123
BstDSI CCRYGG 2 cut(s) 216, 265
BstF5I GGATG 1 cut(s) 177
BstHHI GCGC 2 cut(s) 147, 180
BstKTI GATC 3 cut(s) 208, 259, 310
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 205, 256, 307
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 101
BtgI CCRYGG 2 cut(s) 216, 265
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 153
CfoI GCGC 2 cut(s) 147, 180
Cfr13I GGNCC 1 cut(s) 99
CseI GACGC 1 cut(s) 80
CviAII CATG 4 cut(s) 136, 190, 217, 248
CviJI RGCY 6 cut(s) 23, 58, 101, 215, 264, 274
CviKI_1 RGCY 6 cut(s) 23, 58, 101, 215, 264, 274
DdeI CTNAG 2 cut(s) 63, 123
DpnI GATC 3 cut(s) 207, 258, 309
DpnII GATC 3 cut(s) 205, 256, 307
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 216
Eco32I GATATC 1 cut(s) 283
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 139, 193, 220, 251
FaiI YATR 5 cut(s) 137, 191, 218, 239, 249
FatI CATG 4 cut(s) 135, 189, 216, 247
Fnu4HI GCNGC 3 cut(s) 24, 41, 72
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 3 cut(s) 24, 41, 72
GlaI GCGC 2 cut(s) 146, 179
GluI GCNGC 3 cut(s) 24, 41, 72
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 28, 88
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 147, 180
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 4 cut(s) 139, 193, 220, 251
Hin6I GCGC 2 cut(s) 145, 178
HinP1I GCGC 2 cut(s) 145, 178
HinfI GANTC 2 cut(s) 77, 150
HpaII CCGG 2 cut(s) 28, 88
HphI GGTGA 2 cut(s) 215, 281
Hpy188I TCNGA 2 cut(s) 126, 171
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 135, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 63, 123
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 4 cut(s) 139, 193, 220, 251
HspAI GCGC 2 cut(s) 145, 178
Kzo9I GATC 3 cut(s) 205, 256, 307
LmnI GCTCC 2 cut(s) 20, 55
LpnPI CCDG 6 cut(s) 34, 41, 75, 80, 101, 260
MalI GATC 3 cut(s) 207, 258, 309
MboI GATC 3 cut(s) 205, 256, 307
MhlI GDGCHC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 4 cut(s) 22, 26, 100, 226
MslI CAYNNNNRTG 2 cut(s) 170, 188
MspI CCGG 2 cut(s) 28, 88
MspR9I CCNGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 1 cut(s) 216
NdeII GATC 3 cut(s) 205, 256, 307
NlaIII CATG 4 cut(s) 139, 193, 220, 251
NlaIV GGNNCC 4 cut(s) 9, 22, 100, 304
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 3 cut(s) 25, 42, 73
Ple19I CGATCG 1 cut(s) 310
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PspN4I GGNNCC 4 cut(s) 9, 22, 100, 304
PspPI GGNCC 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 153
PvuI CGATCG 1 cut(s) 310
RseI CAYNNNNRTG 2 cut(s) 170, 188
SatI GCNGC 3 cut(s) 24, 41, 72
Sau3AI GATC 3 cut(s) 205, 256, 307
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 297
SetI ASST 7 cut(s) 60, 64, 111, 132, 237, 276, 338
SmiMI CAYNNNNRTG 2 cut(s) 170, 188
SsiI CCGC 4 cut(s) 24, 40, 71, 74
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 216
TaqI TCGA 4 cut(s) 80, 186, 279, 291
TauI GCSGC 3 cut(s) 26, 43, 74
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 152, 308
TspGWI ACGGA 2 cut(s) 33, 68
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.