Rh5BG117600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000331
Physical Location & Seq
Forward (+)
11057371 .. 11058334
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG117600.1

Sequence Viewer

Length: 786 bp
ATGTGTGATGTTTCGGTTTATGACAAGTCGCCATCGCGCTACCGCTTCGACGTTTTCTGTGCGAAAGCCATTGATCTTAGCTGCGGCAACCTTGTCGATATCAGTGTGCAGAACTTCGGCTCCAATGGTCTCCTTAAGCATATCACTGATAGGGGAATCAGACGGCTCTGTTTTGTGTATTCTGACGTAACAAGTAATGGACTGATTAAAGCGGCTTCGAAGCTTCCGCTGTTGGAGGACCTTGAGCTTTCATACTGCGACTACAGACTTAAATTTTTTGAAAACTTACCCGGGAAACAGATACATGGCTATCTTGAAGTGATTGGCCGTTCATGCCCTCGTTTGAAATCATTGAAATTGAACAAGTACAAAAGTAAATGCCTCTGTGATGAACGTGATGGCGATGCGCTTGCTATAGCAGGATCAATGCATGGTTTACACCACCTCCAGCTTTTCGGAAATAAGCTCACTAGCGAGGGCTTGCGTGCCATTCTTGATGGCTGTCCGCTTCTTGAGTCACTTGATCTGCGTCATTGTTTCAATCTTAATGTGGATCAGCGTCTACCTCATGGTCGTAAACTGGATGTAGAATTGAGAAGAAGATGCAGTGACCATATTGAAAAATTGCGGCTTCCTTATGATTCTAAAGATGACTATGTCTTGCCACAGAAAAACTTGTCCACAAGGAGTTCGAGGCTGAAACTAAGAACTGGAGCTAGCTGTGAACAGAGTTTGATTTACCGATATTTGGCTTCGTGGAGCCCTTCTTGCTTCCCAATGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

261

Amino Acids

29.69

Weight (kDa)

8.87

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 562
AccII CGCG 1 cut(s) 37
AciI CCGC 6 cut(s) 43, 84, 212, 227, 506, 628
AclWI GGATC 2 cut(s) 430, 561
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 748
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 7 cut(s) 281, 317, 346, 355, 361, 541, 620
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 7 cut(s) 81, 223, 247, 451, 466, 716, 720
AluI AGCT 7 cut(s) 81, 223, 247, 451, 466, 716, 720
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 430, 561
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 2 cut(s) 39, 409
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 291, 292
AsuII TTCGAA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 716
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 764
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 40, 392, 491
BceAI ACGGC 2 cut(s) 179, 312
BcgI CGANNNNNNTGC 4 cut(s) 76, 110, 392, 426
BcnI CCSGG 2 cut(s) 291, 292
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 471, 717
BfmI CTRYAG 2 cut(s) 262, 414
BfrI CTTAAG 1 cut(s) 134
BisI GCNGC 4 cut(s) 82, 85, 213, 629
BlsI GCNGC 4 cut(s) 83, 86, 214, 630
Bme1390I CCNGG 2 cut(s) 291, 292
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 121, 761
BmrFI CCNGG 2 cut(s) 291, 292
BmsI GCATC 2 cut(s) 394, 593
BmtI GCTAGC 1 cut(s) 720
BpmI CTGGAG 2 cut(s) 431, 732
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 263, 533
BpuMI CCSGG 2 cut(s) 291, 292
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 748
Bse1I ACTGG 2 cut(s) 585, 715
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 1 cut(s) 748
BseNI ACTGG 2 cut(s) 585, 715
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 748
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 4 cut(s) 73, 422, 523, 553
BspACI CCGC 6 cut(s) 43, 84, 212, 227, 506, 628
BspANI GGCC 1 cut(s) 327
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 121, 761
BspOI GCTAGC 1 cut(s) 720
BspPI GGATC 2 cut(s) 430, 561
BspT104I TTCGAA 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 585, 715
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 4 cut(s) 73, 422, 523, 553
BstAFI CTTAAG 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 4 cut(s) 411, 482, 486, 718
BstDEI CTNAG 2 cut(s) 77, 704
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 2 cut(s) 39, 409
BstKTI GATC 4 cut(s) 76, 425, 526, 556
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 4 cut(s) 73, 422, 523, 553
BstMWI GCNNNNNNNGC 2 cut(s) 333, 768
BstSCI CCNGG 2 cut(s) 289, 290
BstSFI CTRYAG 2 cut(s) 262, 414
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 327
BtgZI GCGATG 2 cut(s) 18, 417
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 3 cut(s) 109, 144, 613
Cac8I GCNNGC 4 cut(s) 411, 482, 486, 718
CfoI GCGC 2 cut(s) 39, 409
Cfr13I GGNCC 1 cut(s) 238
Cfr9I CCCGGG 1 cut(s) 290
CseI GACGC 2 cut(s) 518, 548
Csp6I GTAC 1 cut(s) 367
CviAII CATG 4 cut(s) 305, 333, 431, 569
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 77, 704
DpnI GATC 4 cut(s) 75, 424, 525, 555
DpnII GATC 4 cut(s) 73, 422, 523, 553
EaeI YGGCCR 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 238
EcoRV GATATC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 764
FaeI CATG 4 cut(s) 308, 336, 434, 572
FatI CATG 4 cut(s) 304, 332, 430, 568
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 4 cut(s) 82, 85, 213, 629
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 764
Fsp4HI GCNGC 4 cut(s) 82, 85, 213, 629
FspBI CTAG 2 cut(s) 471, 717
GlaI GCGC 2 cut(s) 38, 408
GluI GCNGC 4 cut(s) 82, 85, 213, 629
GsuI CTGGAG 2 cut(s) 431, 732
HaeIII GGCC 1 cut(s) 327
HapII CCGG 1 cut(s) 291
HgaI GACGC 2 cut(s) 518, 548
HhaI GCGC 2 cut(s) 39, 409
Hin1II CATG 4 cut(s) 308, 336, 434, 572
Hin6I GCGC 2 cut(s) 37, 407
HinP1I GCGC 2 cut(s) 37, 407
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 156, 515, 641
HpaII CCGG 1 cut(s) 291
Hpy166II GTNNAC 5 cut(s) 437, 563, 578, 681, 725
Hpy188I TCNGA 3 cut(s) 161, 184, 458
Hpy188III TCNNGA 3 cut(s) 314, 494, 512
Hpy8I GTNNAC 5 cut(s) 437, 563, 578, 681, 725
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 774
HpyCH4IV ACGT 3 cut(s) 51, 186, 394
HpyCH4V TGCA 3 cut(s) 109, 430, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 768
HpyF3I CTNAG 2 cut(s) 77, 704
HpySE526I ACGT 3 cut(s) 51, 186, 394
Hsp92II CATG 4 cut(s) 308, 336, 434, 572
HspAI GCGC 2 cut(s) 37, 407
Kzo9I GATC 4 cut(s) 73, 422, 523, 553
LmnI GCTCC 3 cut(s) 125, 713, 759
LpnPI CCDG 5 cut(s) 304, 405, 461, 566, 696
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 394, 593
MaeI CTAG 2 cut(s) 471, 717
MaeII ACGT 3 cut(s) 51, 186, 394
MaeIII GTNAC 3 cut(s) 187, 516, 608
MalI GATC 4 cut(s) 75, 424, 525, 555
MboI GATC 4 cut(s) 73, 422, 523, 553
MboII GAAGA 2 cut(s) 609, 612
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 4 cut(s) 272, 356, 590, 623
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 229, 348, 392, 455, 469, 576, 687
Mph1103I ATGCAT 1 cut(s) 432
MseI TTAA 4 cut(s) 135, 207, 270, 546
MspA1I CMGCKG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 291, 292
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 333, 768
NciI CCSGG 2 cut(s) 291, 292
NdeII GATC 4 cut(s) 73, 422, 523, 553
NheI GCTAGC 1 cut(s) 716
NlaIII CATG 4 cut(s) 308, 336, 434, 572
NlaIV GGNNCC 2 cut(s) 121, 761
NmuCI GTSAC 2 cut(s) 516, 608
NsiI ATGCAT 1 cut(s) 432
NspV TTCGAA 1 cut(s) 218
PfeI GAWTC 2 cut(s) 156, 641
PflFI GACNNNGTC 1 cut(s) 656
PkrI GCNGC 4 cut(s) 83, 86, 214, 630
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 121, 761
PspPI GGNCC 1 cut(s) 238
PspPPI RGGWCCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 656
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 4 cut(s) 135, 207, 270, 546
SatI GCNGC 4 cut(s) 82, 85, 213, 629
Sau3AI GATC 4 cut(s) 73, 422, 523, 553
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 291, 292
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 2 cut(s) 394, 593
SfcI CTRYAG 2 cut(s) 262, 414
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 238
SmaI CCCGGG 1 cut(s) 292
SmlI CTYRAG 3 cut(s) 134, 242, 512
SmoI CTYRAG 3 cut(s) 134, 242, 512
Sse9I AATT 4 cut(s) 272, 356, 590, 623
SsiI CCGC 6 cut(s) 43, 84, 212, 227, 506, 628
SspMI CTAG 2 cut(s) 471, 717
StyD4I CCNGG 2 cut(s) 289, 290
TaiI ACGT 3 cut(s) 54, 189, 397
TaqI TCGA 4 cut(s) 48, 96, 218, 692
TasI AATT 4 cut(s) 272, 356, 590, 623
TatI WGTACW 1 cut(s) 366
TauI GCSGC 3 cut(s) 87, 215, 631
TfiI GAWTC 2 cut(s) 156, 641
Tru1I TTAA 4 cut(s) 135, 207, 270, 546
Tru9I TTAA 4 cut(s) 135, 207, 270, 546
TscAI CASTG 3 cut(s) 109, 151, 613
TseFI GTSAC 2 cut(s) 516, 608
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 2 cut(s) 516, 608
TspDTI ATGAA 3 cut(s) 240, 321, 405
TspMI CCCGGG 1 cut(s) 290
TspRI CASTG 3 cut(s) 109, 151, 613
Tth111I GACNNNGTC 1 cut(s) 656
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 272
XmaI CCCGGG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 562
XspI CTAG 2 cut(s) 471, 717
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.