RLG00000021727

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000331
Physical Location & Seq
Forward (+)
77562381 .. 77563994
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021727

Sequence Viewer

Length: 645 bp
ATGGGATGGGTGCAAGTCTCTAACATGGGATCAGAAGAGTCACTGAAACTGAACAAGCGCCACGATATCGAATATGATTGGGACGGCCGTGTACTTGCTAAACTTCACCACCATTACCAGGTTTTCGGAAGTAAGAGTAGTAGCGAGGTACTACACGATGATGACGATGCACTTGCTATAGCGGGAACAATGCATGGTTTACAACAGCTCCAGATATTTGGAAATAAGGTGACTAACAAGGGCTTGCAAGCCATTCTTGATAGTTGTCCATGTCTTGAGTCACTTGATCTGCGTCGTTGTTTCAATCTTAAGGTGGAAGGAGATTTGAAGAGAAGGTGCTTTCAAGGAATTAAACAGTTGCGGCTTCCCGATGATTCTACAGATGACTATGAACTTGTTGCCACAGATGAAATTGTTTACGAACTGTACCAGTCTTTTTATAGTGTACTATATTGGCTAGGACGTCAAAGACTAGATCAGCTCTACCAAATCGACTTTGGTATCGATCTACCATTAATTATTATGCAAGTCATTCCAATCTCTACTTCCTTTGCTGCTATCTGTCTGAGCAAGCATCAATGGGGTACTCGTAGGTGCCCACCATTGGGACAGAGAATTTGGGTTGGGGCAGAGTCTAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

215

Amino Acids

24.59

Weight (kDa)

5.78

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 594
AciI CCGC 2 cut(s) 182, 361
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 615
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 5 cut(s) 93, 150, 428, 447, 586
AfiI CCNNNNNNNGG 3 cut(s) 118, 604, 605
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 3 cut(s) 304, 328, 344
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 2 cut(s) 208, 481
AluI AGCT 2 cut(s) 208, 481
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 1 cut(s) 615
ArsI GACNNNNNNTTYG 2 cut(s) 600, 632
AseI ATTAAT 1 cut(s) 515
AspLEI GCGC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 98, 241
BaeGI GKGCMC 1 cut(s) 599
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanI GGYRCC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 541
BceAI ACGGC 2 cut(s) 72, 100
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 3 cut(s) 458, 473, 636
BfmI CTRYAG 2 cut(s) 177, 378
BfoI RGCGCY 1 cut(s) 61
BfrI CTTAAG 1 cut(s) 308
BisI GCNGC 2 cut(s) 362, 555
BlsI GCNGC 2 cut(s) 363, 556
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 157, 583
BpmI CTGGAG 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 296
Bsa29I ATCGAT 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 604, 605
Bse1I ACTGG 1 cut(s) 430
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 504
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 3 cut(s) 118, 604, 605
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 599
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 541
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 594
BshVI ATCGAT 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 88
BslFI GGGAC 2 cut(s) 95, 621
BslI CCNNNNNNNGG 3 cut(s) 118, 604, 605
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 2 cut(s) 95, 621
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 4 cut(s) 29, 286, 475, 505
BspACI CCGC 2 cut(s) 182, 361
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 558
BspDI ATCGAT 1 cut(s) 504
BspLI GGNNCC 1 cut(s) 596
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 594
BspTI CTTAAG 1 cut(s) 308
BsrI ACTGG 1 cut(s) 430
BssMI GATC 4 cut(s) 29, 286, 475, 505
BssNI GRCGYC 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 357, 426
Bst6I CTCTTC 2 cut(s) 30, 323
BstACI GRCGYC 1 cut(s) 463
BstAFI CTTAAG 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 245, 249, 572
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 4 cut(s) 32, 289, 478, 508
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 4 cut(s) 29, 286, 475, 505
BstMCI CGRYCG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 2 cut(s) 177, 378
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 218
BstZI CGGCCG 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 245, 249, 572
CfoI GCGC 1 cut(s) 60
ClaI ATCGAT 1 cut(s) 504
CseI GACGC 1 cut(s) 281
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 5 cut(s) 92, 149, 427, 446, 585
CviAII CATG 3 cut(s) 25, 194, 270
CviJI RGCY 7 cut(s) 87, 208, 243, 251, 364, 457, 481
CviKI_1 RGCY 7 cut(s) 87, 208, 243, 251, 364, 457, 481
CviQI GTAC 5 cut(s) 92, 149, 427, 446, 585
DdeI CTNAG 1 cut(s) 566
DpnI GATC 4 cut(s) 31, 288, 477, 507
DpnII GATC 4 cut(s) 29, 286, 475, 505
EaeI YGGCCR 1 cut(s) 85
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 30, 323
EarI CTCTTC 2 cut(s) 30, 323
EclXI CGGCCG 1 cut(s) 85
Eco32I GATATC 1 cut(s) 67
Eco52I CGGCCG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 195
FaeI CATG 3 cut(s) 28, 197, 273
FaiI YATR 9 cut(s) 26, 75, 179, 195, 271, 390, 441, 451, 524
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 2 cut(s) 95, 621
FatI CATG 3 cut(s) 24, 193, 269
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 362, 555
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 362, 555
FspBI CTAG 3 cut(s) 458, 473, 636
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 362, 555
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 3 cut(s) 28, 197, 273
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 4 cut(s) 38, 278, 374, 632
HphI GGTGA 2 cut(s) 98, 241
Hpy166II GTNNAC 4 cut(s) 92, 200, 418, 446
Hpy188I TCNGA 3 cut(s) 34, 128, 567
Hpy188III TCNNGA 4 cut(s) 211, 257, 275, 368
Hpy8I GTNNAC 4 cut(s) 92, 200, 418, 446
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 2 cut(s) 311, 327
HpyCH4III ACNGT 2 cut(s) 357, 426
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 5 cut(s) 13, 170, 193, 247, 526
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 1 cut(s) 463
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 3 cut(s) 28, 197, 273
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 4 cut(s) 29, 286, 475, 505
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 104, 131, 224, 443
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 2 cut(s) 157, 583
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 3 cut(s) 458, 473, 636
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 3 cut(s) 39, 229, 279
MalI GATC 4 cut(s) 31, 288, 477, 507
MboI GATC 4 cut(s) 29, 286, 475, 505
MboII GAAGA 2 cut(s) 47, 340
MhlI GDGCHC 1 cut(s) 599
MluCI AATT 4 cut(s) 348, 411, 516, 615
MlyI GAGTC 3 cut(s) 47, 287, 641
MnlI CCTC 1 cut(s) 139
Mph1103I ATGCAT 1 cut(s) 195
MseI TTAA 3 cut(s) 309, 351, 515
MslI CAYNNNNRTG 1 cut(s) 159
MspCI CTTAAG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NdeII GATC 4 cut(s) 29, 286, 475, 505
NlaIII CATG 3 cut(s) 28, 197, 273
NlaIV GGNNCC 1 cut(s) 596
NmuCI GTSAC 3 cut(s) 39, 229, 279
NsiI ATGCAT 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 363, 556
PleI GAGTC 3 cut(s) 46, 286, 640
PpsI GAGTC 3 cut(s) 46, 286, 640
PshBI ATTAAT 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 596
RsaI GTAC 5 cut(s) 93, 150, 428, 447, 586
RsaNI GTAC 5 cut(s) 92, 149, 427, 446, 585
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 3 cut(s) 309, 351, 515
SatI GCNGC 2 cut(s) 362, 555
Sau3AI GATC 4 cut(s) 29, 286, 475, 505
SchI GAGTC 3 cut(s) 47, 287, 641
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 599
SetI ASST 9 cut(s) 123, 150, 210, 231, 315, 338, 466, 483, 596
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 2 cut(s) 157, 583
SfcI CTRYAG 2 cut(s) 177, 378
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 275, 308
SmoI CTYRAG 2 cut(s) 275, 308
Sse9I AATT 4 cut(s) 348, 411, 516, 615
SsiI CCGC 2 cut(s) 182, 361
SspMI CTAG 3 cut(s) 458, 473, 636
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 357, 426
TaiI ACGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 69, 492, 504
TasI AATT 4 cut(s) 348, 411, 516, 615
TatI WGTACW 2 cut(s) 91, 445
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 309, 351, 515
Tru9I TTAA 3 cut(s) 309, 351, 515
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 3 cut(s) 39, 229, 279
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 3 cut(s) 39, 229, 279
TspDTI ATGAA 2 cut(s) 405, 423
TspRI CASTG 1 cut(s) 48
Vha464I CTTAAG 1 cut(s) 308
VspI ATTAAT 1 cut(s) 515
XapI RAATTY 1 cut(s) 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 3 cut(s) 458, 473, 636
ZraI GACGTC 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.