AT4G03630

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000331
Physical Location & Seq
Forward (+)
1608750 .. 1610037
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03630.1

Sequence Viewer

Length: 663 bp
ATGAACAATGAAGATTTTAACGCCGATGAACTCCTCACTTTCGTCGCCTATAGATCAAGTATTCTGAAACGCCTTGGACGTATGATGTGTCATGCCGTTGCTCTCAGCCAAGGCGGCTGTGTAGAGATAAACATTGAACATTTTGGCACTGATTCTCTCCTCACCTACATTGCTGATAGATCAAGTAATTTGAGACACCTTGGACTTGCTAAGTGCGATCAAATAACGGGCATGGGACTGTTCACAGAAGCCATGAAACTTCCATTGCTTGAAGACCTCGAGCTTTCATACTGCTTAATCAAAGGAAAGAATTTGGAAGCTATAGGCTTCGCTTGCCTGCATTTGAAGACATTGAAGCTAAACTGTCAAGGTTTCAAGTTCCCCGGCTTTACGTATGATCATGATGCCCTAGGCATTGCTAAAAGAATGCCCGAACTGCGATGTCTCCAGCTTTTTGGGAACAGAGTATCAGACGTAGGGTTGAACGCGATTTTCGACGGTTGTCCTCACCTGGAACACCTCGATTTACGTCAGTGTTTCAACATTAATCTTGTAGGGGATCTGGAGAAGCGTTGTATGGAGAGGATCAAAGATTTGAGACGCCCCAACGATTCAACTGCTGATTACCCATATGATACAAGTTTGCTCGATCTAGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_4 LRR_6

Protein Analysis

220

Amino Acids

24.77

Weight (kDa)

5.79

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 488
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 567, 593
AcsI RAATTY 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 601
AgsI TTSAA 8 cut(s) 137, 272, 346, 355, 376, 484, 541, 615
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 4 cut(s) 283, 320, 358, 451
AluI AGCT 4 cut(s) 283, 320, 358, 451
Alw26I GTCTC 3 cut(s) 187, 449, 592
AlwI GGATC 2 cut(s) 567, 593
Ama87I CYCGRG 1 cut(s) 278
ApoI RAATTY 1 cut(s) 310
AseI ATTAAT 1 cut(s) 546
AspA2I CCTAGG 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 154, 500
AvaI CYCGRG 1 cut(s) 278
AvrII CCTAGG 1 cut(s) 409
BbsI GAAGAC 2 cut(s) 279, 353
BceAI ACGGC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 1 cut(s) 512
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 3 cut(s) 187, 449, 592
BfaI CTAG 2 cut(s) 410, 653
BfmI CTRYAG 2 cut(s) 49, 321
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 1 cut(s) 115
BlnI CCTAGG 1 cut(s) 409
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 384, 512
BmeT110I CYCGRG 1 cut(s) 278
BmrFI CCNGG 2 cut(s) 384, 512
BmsI GCATC 1 cut(s) 394
BoxI GACNNNNGTC 1 cut(s) 501
BpiI GAAGAC 2 cut(s) 279, 353
BpmI CTGGAG 2 cut(s) 431, 584
BpuMI CCSGG 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 601
BsaJI CCNNGG 5 cut(s) 73, 109, 199, 382, 409
Bse3DI GCAATG 3 cut(s) 168, 263, 414
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 5 cut(s) 73, 109, 199, 382, 409
BseMI GCAATG 3 cut(s) 168, 263, 414
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 23, 149
Bsh1236I CGCG 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 187, 449, 592
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 432
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
BspACI CCGC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 1 cut(s) 488
BspHI TCATGA 1 cut(s) 400
BspPI GGATC 2 cut(s) 567, 593
BsrDI GCAATG 3 cut(s) 168, 263, 414
BssECI CCNNGG 5 cut(s) 73, 109, 199, 382, 409
BssMI GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
BssNI GRCGYC 1 cut(s) 601
BssT1I CCWWGG 4 cut(s) 73, 109, 199, 409
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 240, 365, 500
BstACI GRCGYC 1 cut(s) 601
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 334, 338
BstDEI CTNAG 2 cut(s) 104, 210
BstFNI CGCG 1 cut(s) 488
BstKTI GATC 7 cut(s) 56, 182, 220, 400, 562, 588, 652
BstMAI GTCTC 3 cut(s) 187, 449, 592
BstMBI GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
BstMWI GCNNNNNNNGC 3 cut(s) 114, 333, 436
BstNI CCWGG 1 cut(s) 512
BstPAI GACNNNNGTC 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 382, 510
BstSFI CTRYAG 2 cut(s) 49, 321
BstSNI TACGTA 1 cut(s) 393
BstUI CGCG 1 cut(s) 488
BstV2I GAAGAC 2 cut(s) 279, 353
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 454
BtsIMutI CAGTG 2 cut(s) 147, 539
Cac8I GCNNGC 2 cut(s) 334, 338
CciI TCATGA 1 cut(s) 400
CseI GACGC 1 cut(s) 609
CviAII CATG 4 cut(s) 92, 232, 253, 401
CviJI RGCY 9 cut(s) 108, 117, 251, 283, 320, 327, 358, 387, 451
CviKI_1 RGCY 9 cut(s) 108, 117, 251, 283, 320, 327, 358, 387, 451
DdeI CTNAG 2 cut(s) 104, 210
DpnI GATC 7 cut(s) 55, 181, 219, 399, 561, 587, 651
DpnII GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
Eco105I TACGTA 1 cut(s) 393
Eco130I CCWWGG 4 cut(s) 73, 109, 199, 409
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 4 cut(s) 73, 109, 199, 409
ErhI CCWWGG 4 cut(s) 73, 109, 199, 409
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 4 cut(s) 95, 235, 256, 404
FaqI GGGAC 1 cut(s) 249
FatI CATG 4 cut(s) 91, 231, 252, 400
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 2 cut(s) 410, 653
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 2 cut(s) 431, 584
HapII CCGG 1 cut(s) 384
HgaI GACGC 1 cut(s) 609
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 4 cut(s) 95, 235, 256, 404
HinfI GANTC 2 cut(s) 152, 611
HpaII CCGG 1 cut(s) 384
HphI GGTGA 2 cut(s) 154, 500
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 66, 472
Hpy188III TCNNGA 2 cut(s) 401, 563
Hpy8I GTNNAC 1 cut(s) 243
Hpy99I CGWCG 2 cut(s) 47, 500
HpyCH4III ACNGT 3 cut(s) 240, 365, 500
HpyCH4IV ACGT 4 cut(s) 79, 392, 474, 529
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 333, 436
HpyF3I CTNAG 2 cut(s) 104, 210
HpySE526I ACGT 4 cut(s) 79, 392, 474, 529
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 4 cut(s) 95, 235, 256, 404
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
LpnPI CCDG 6 cut(s) 350, 397, 461, 497, 524, 548
LweI GCATC 1 cut(s) 394
MaeI CTAG 2 cut(s) 410, 653
MaeII ACGT 4 cut(s) 79, 392, 474, 529
MalI GATC 7 cut(s) 55, 181, 219, 399, 561, 587, 651
MboI GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
MboII GAAGA 3 cut(s) 23, 284, 358
MflI RGATCY 1 cut(s) 559
MluCI AATT 2 cut(s) 187, 310
MnlI CCTC 6 cut(s) 44, 170, 287, 516, 530, 576
MseI TTAA 3 cut(s) 18, 296, 546
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 2 cut(s) 384, 512
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 114, 333, 436
NciI CCSGG 1 cut(s) 384
NdeI CATATG 1 cut(s) 631
NdeII GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
NlaIII CATG 4 cut(s) 95, 235, 256, 404
PaeR7I CTCGAG 1 cut(s) 278
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 2 cut(s) 76, 492
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 152, 611
PkrI GCNGC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 393
PshAI GACNNNNGTC 1 cut(s) 501
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspXI VCTCGAGB 1 cut(s) 278
PsuI RGATCY 1 cut(s) 559
SaqAI TTAA 3 cut(s) 18, 296, 546
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 7 cut(s) 53, 179, 217, 397, 559, 585, 649
ScrFI CCNGG 2 cut(s) 384, 512
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 49, 321
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SnaBI TACGTA 1 cut(s) 393
Sse9I AATT 2 cut(s) 187, 310
SsiI CCGC 1 cut(s) 114
SspMI CTAG 2 cut(s) 410, 653
StyD4I CCNGG 2 cut(s) 382, 510
StyI CCWWGG 4 cut(s) 73, 109, 199, 409
TaaI ACNGT 3 cut(s) 240, 365, 500
TaiI ACGT 4 cut(s) 82, 395, 477, 532
TaqI TCGA 4 cut(s) 279, 495, 522, 648
TasI AATT 2 cut(s) 187, 310
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 152, 611
Tru1I TTAA 3 cut(s) 18, 296, 546
Tru9I TTAA 3 cut(s) 18, 296, 546
TscAI CASTG 2 cut(s) 154, 539
TspDTI ATGAA 5 cut(s) 17, 24, 42, 269, 276
TspRI CASTG 2 cut(s) 154, 539
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 409
XspI CTAG 2 cut(s) 410, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.