FvH4_2g19530

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000331
Physical Location & Seq
Reverse (-)
16567739 .. 16569278
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19530.t1

Sequence Viewer

Length: 951 bp
ATGGCAGAACCCTCAAACAAAACCCAGCGGCAAGACAGAAATCAAAACCCCCGGAGCTGGATCGACCTCCCTGACGACGTCACGGCTTCGATACTATTACAATTGGGAGCCATCGAGATTCTGGTGACAGCCATGAACGTGTGCACGACATGGCGCAAAATCTGCAAGGACCCTAGAAAGTGGCTCACCATCGACATGTGCGATGTTTCGGTTTATGGCGAGTCGCCCTCGCCCTACCCCATGGACAAGTTGTGTAGGAAAGCCATTGATCTTAGCTGTGGCAACCTCGTCGACATCAGTGTGCACAACTTCGGGCCCGATGATCTCCTTAAGTATATCACTGATAGTTGTAGGGGAATCAAACGGCTTTGTATTGTGTATTCTGACATAGCAAATAGTGGACTGATTGAAGCGGCACCAATGCTCCCGTTGTTGGAGGACCTTGAAATTTCTTACTGCAACTACAGACTCGATATTACTCCCTTCAATATGTTCCATTGCATACAGCATGGCTATCTTGAAGTGATTGGCCGTTGTTGCCCTCGTTTGAAATCGTTGAAATTGAACAAGTACAACAATCACAACACTAAATATAATTTTGATGGATGGGATGGCGATGCATTTGCTATAGCAGGGACGATGCAGGGTTTGCAGCACCTCCAGCTTTTTGAAAATAGGCTCACTAGCAAGGGCTTGGGCGCCATTCTTGATGGTTGTCCGCTGCTTGAGTCACTTGATCTGCGTCAATGTTGGCATATTAATCTGGAGCCTGAGCTGGCTCATCATTGGCTTGTTAAACTGGATGAAGAATTGCAAAGCAGATGCATCGACAGTATCAAAAACTTGCGGCTTCCTCATGATTCTAAACATGACTATGAACGTCTTGCAGCAGAAAAACTTGTCCACAAGGAGTTTGTGGAAGAATCTAAGAACTATATCGTGAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

317

Amino Acids

36.15

Weight (kDa)

5.77

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 62 1.3e-07 F-box domain
F-box-like PF12937 20 - 65 9.2e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 2 cut(s) 415, 698
AccI GTMKAC 1 cut(s) 291
AciI CCGC 4 cut(s) 28, 413, 719, 847
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 1 cut(s) 447
AcyI GRCGYC 2 cut(s) 78, 699
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 2 cut(s) 57, 433
AflII CTTAAG 1 cut(s) 329
AflIII ACRYGT 2 cut(s) 138, 195
AgsI TTSAA 8 cut(s) 410, 446, 487, 521, 550, 559, 565, 671
AluBI AGCT 4 cut(s) 57, 276, 664, 775
AluI AGCT 4 cut(s) 57, 276, 664, 775
Alw21I GWGCWC 2 cut(s) 146, 306
Alw44I GTGCAC 2 cut(s) 142, 302
AlwI GGATC 1 cut(s) 68
AoxI GGCC 2 cut(s) 314, 529
ApaI GGGCCC 1 cut(s) 318
ApaLI GTGCAC 2 cut(s) 142, 302
ApeKI GCWGC 3 cut(s) 652, 721, 887
ApoI RAATTY 1 cut(s) 447
AseI ATTAAT 1 cut(s) 759
AspLEI GCGC 2 cut(s) 156, 701
AspS9I GGNCC 4 cut(s) 169, 314, 315, 439
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 136, 178
AvaII GGWCC 2 cut(s) 169, 439
BaeGI GKGCMC 3 cut(s) 146, 306, 318
BanI GGYRCC 2 cut(s) 415, 698
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 2 cut(s) 146, 306
BbvI GCAGC 3 cut(s) 664, 708, 899
BccI CCATC 6 cut(s) 119, 197, 596, 600, 605, 704
BceAI ACGGC 3 cut(s) 99, 380, 516
BcgI CGANNNNNNTGC 6 cut(s) 271, 305, 605, 639, 808, 842
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 2 cut(s) 174, 684
BfmI CTRYAG 2 cut(s) 463, 627
BfoI RGCGCY 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 6 cut(s) 29, 414, 653, 722, 848, 888
BlsI GCNGC 6 cut(s) 30, 415, 654, 723, 849, 889
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 2 cut(s) 169, 439
BmgT120I GGNCC 4 cut(s) 169, 314, 315, 439
BmiI GGNNCC 6 cut(s) 109, 171, 316, 417, 700, 768
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 4 cut(s) 607, 630, 812, 834
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 2 cut(s) 644, 785
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 52
BsaHI GRCGYC 2 cut(s) 78, 699
BsaJI CCNNGG 2 cut(s) 50, 240
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 433
Bse1I ACTGG 1 cut(s) 804
Bse3DI GCAATG 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 50, 240
BseGI GGATG 3 cut(s) 611, 616, 808
BseLI CCNNNNNNNGG 2 cut(s) 57, 433
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 1 cut(s) 804
BseSI GKGCMC 3 cut(s) 146, 306, 318
BseXI GCAGC 3 cut(s) 664, 708, 899
BseYI CCCAGC 1 cut(s) 24
BshFI GGCC 2 cut(s) 316, 531
BshNI GGYRCC 2 cut(s) 415, 698
BsiHKAI GWGCWC 2 cut(s) 146, 306
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 57, 433
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 2 cut(s) 316, 531
Bsp120I GGGCCC 1 cut(s) 314
Bsp1286I GDGCHC 3 cut(s) 146, 306, 318
Bsp143I GATC 4 cut(s) 60, 268, 322, 736
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 4 cut(s) 28, 413, 719, 847
BspANI GGCC 2 cut(s) 316, 531
BspCNI CTCAG 1 cut(s) 763
BspHI TCATGA 2 cut(s) 856, 947
BspLI GGNNCC 6 cut(s) 109, 171, 316, 417, 700, 768
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 2 cut(s) 415, 698
BspTI CTTAAG 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 1 cut(s) 804
BssECI CCNNGG 2 cut(s) 50, 240
BssMI GATC 4 cut(s) 60, 268, 322, 736
BssNI GRCGYC 2 cut(s) 78, 699
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 833
BstACI GRCGYC 2 cut(s) 78, 699
BstAFI CTTAAG 1 cut(s) 329
BstAPI GCANNNNNTGC 2 cut(s) 162, 649
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 3 cut(s) 272, 771, 927
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 611, 616, 808
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 2 cut(s) 156, 701
BstKTI GATC 4 cut(s) 63, 271, 325, 739
BstMBI GATC 4 cut(s) 60, 268, 322, 736
BstMWI GCNNNNNNNGC 4 cut(s) 162, 537, 649, 661
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 2 cut(s) 463, 627
BstSLI GKGCMC 3 cut(s) 146, 306, 318
BstV1I GCAGC 3 cut(s) 664, 708, 899
BsuRI GGCC 2 cut(s) 316, 531
BtgI CCRYGG 1 cut(s) 240
BtgZI GCGATG 2 cut(s) 216, 630
BtsCI GGATG 3 cut(s) 611, 616, 808
BtsIMutI CAGTG 2 cut(s) 304, 339
Cac8I GCNNGC 1 cut(s) 777
CciI TCATGA 2 cut(s) 856, 947
CfoI GCGC 2 cut(s) 156, 701
Cfr13I GGNCC 4 cut(s) 169, 314, 315, 439
CseI GACGC 1 cut(s) 731
Csp6I GTAC 1 cut(s) 571
CviAII CATG 8 cut(s) 133, 150, 196, 241, 509, 857, 869, 948
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 272, 771, 927
DinI GGCGCC 1 cut(s) 700
DpnI GATC 4 cut(s) 62, 270, 324, 738
DpnII GATC 4 cut(s) 60, 268, 322, 736
EaeI YGGCCR 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 169, 439
EcoO109I RGGNCCY 2 cut(s) 169, 439
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 2 cut(s) 622, 827
EcoT38I GRGCYC 1 cut(s) 318
EgeI GGCGCC 1 cut(s) 700
EheI GGCGCC 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 8 cut(s) 136, 153, 199, 244, 512, 860, 872, 951
FaqI GGGAC 1 cut(s) 649
FatI CATG 8 cut(s) 132, 149, 195, 240, 508, 856, 868, 947
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 6 cut(s) 29, 414, 653, 722, 848, 888
FokI GGATG 3 cut(s) 618, 623, 815
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 6 cut(s) 29, 414, 653, 722, 848, 888
FspBI CTAG 2 cut(s) 174, 684
GlaI GCGC 2 cut(s) 155, 700
GluI GCNGC 6 cut(s) 29, 414, 653, 722, 848, 888
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 2 cut(s) 644, 785
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 2 cut(s) 316, 531
HapII CCGG 1 cut(s) 52
HgaI GACGC 1 cut(s) 731
HhaI GCGC 2 cut(s) 156, 701
Hin1I GRCGYC 2 cut(s) 78, 699
Hin1II CATG 8 cut(s) 136, 153, 199, 244, 512, 860, 872, 951
Hin6I GCGC 2 cut(s) 154, 699
HinP1I GCGC 2 cut(s) 154, 699
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 7 cut(s) 118, 221, 357, 468, 728, 860, 923
HpaII CCGG 1 cut(s) 52
HphI GGTGA 2 cut(s) 136, 178
Hpy166II GTNNAC 5 cut(s) 144, 292, 304, 401, 904
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 7 cut(s) 115, 518, 707, 764, 857, 940, 948
Hpy8I GTNNAC 5 cut(s) 144, 292, 304, 401, 904
Hpy99I CGWCG 2 cut(s) 80, 293
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 1 cut(s) 833
HpyCH4IV ACGT 3 cut(s) 78, 138, 880
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 537, 649, 661
HpyF3I CTNAG 3 cut(s) 272, 771, 927
HpySE526I ACGT 3 cut(s) 78, 138, 880
Hsp92I GRCGYC 2 cut(s) 78, 699
Hsp92II CATG 8 cut(s) 136, 153, 199, 244, 512, 860, 872, 951
HspAI GCGC 2 cut(s) 154, 699
KasI GGCGCC 1 cut(s) 698
Kzo9I GATC 4 cut(s) 60, 268, 322, 736
LmnI GCTCC 4 cut(s) 54, 107, 429, 766
Lsp1109I GCAGC 3 cut(s) 664, 708, 899
LweI GCATC 4 cut(s) 607, 630, 812, 834
MaeI CTAG 2 cut(s) 174, 684
MaeII ACGT 3 cut(s) 78, 138, 880
MaeIII GTNAC 3 cut(s) 79, 124, 729
MalI GATC 4 cut(s) 62, 270, 324, 738
MboI GATC 4 cut(s) 60, 268, 322, 736
MboII GAAGA 2 cut(s) 818, 932
MfeI CAATTG 1 cut(s) 101
MhlI GDGCHC 3 cut(s) 146, 306, 318
MluCI AATT 5 cut(s) 101, 447, 560, 595, 809
Mly113I GGCGCC 1 cut(s) 699
MlyI GAGTC 3 cut(s) 230, 462, 737
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 8 cut(s) 22, 77, 238, 296, 430, 552, 668, 864
Mph1103I ATGCAT 2 cut(s) 622, 827
MseI TTAA 3 cut(s) 330, 759, 795
MslI CAYNNNNRTG 4 cut(s) 137, 194, 299, 873
MspA1I CMGCKG 2 cut(s) 28, 721
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 4 cut(s) 162, 537, 649, 661
NarI GGCGCC 1 cut(s) 699
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 60, 268, 322, 736
NlaIII CATG 8 cut(s) 136, 153, 199, 244, 512, 860, 872, 951
NlaIV GGNNCC 6 cut(s) 109, 171, 316, 417, 700, 768
NmuCI GTSAC 3 cut(s) 79, 124, 729
NsiI ATGCAT 2 cut(s) 622, 827
NspI RCATGY 1 cut(s) 199
PagI TCATGA 2 cut(s) 856, 947
PciI ACATGT 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 4 cut(s) 118, 357, 860, 923
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 6 cut(s) 30, 415, 654, 723, 849, 889
PleI GAGTC 3 cut(s) 229, 462, 736
PluTI GGCGCC 1 cut(s) 702
PpsI GAGTC 3 cut(s) 229, 462, 736
PpuMI RGGWCCY 2 cut(s) 169, 439
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 759
Psp5II RGGWCCY 2 cut(s) 169, 439
PspFI CCCAGC 1 cut(s) 24
PspN4I GGNNCC 6 cut(s) 109, 171, 316, 417, 700, 768
PspOMI GGGCCC 1 cut(s) 314
PspPI GGNCC 4 cut(s) 169, 314, 315, 439
PspPPI RGGWCCY 2 cut(s) 169, 439
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 4 cut(s) 137, 194, 299, 873
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 330, 759, 795
SatI GCNGC 6 cut(s) 29, 414, 653, 722, 848, 888
Sau3AI GATC 4 cut(s) 60, 268, 322, 736
Sau96I GGNCC 4 cut(s) 169, 314, 315, 439
SchI GAGTC 3 cut(s) 230, 462, 737
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 3 cut(s) 146, 306, 318
SfaNI GCATC 4 cut(s) 607, 630, 812, 834
SfcI CTRYAG 2 cut(s) 463, 627
SfoI GGCGCC 1 cut(s) 700
SinI GGWCC 2 cut(s) 169, 439
SmiMI CAYNNNNRTG 4 cut(s) 137, 194, 299, 873
SmlI CTYRAG 2 cut(s) 329, 725
SmoI CTYRAG 2 cut(s) 329, 725
Sse9I AATT 5 cut(s) 101, 447, 560, 595, 809
SsiI CCGC 4 cut(s) 28, 413, 719, 847
SspDI GGCGCC 1 cut(s) 698
SspMI CTAG 2 cut(s) 174, 684
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 833
TaiI ACGT 3 cut(s) 81, 141, 883
TaqI TCGA 7 cut(s) 63, 89, 114, 192, 291, 471, 828
TasI AATT 5 cut(s) 101, 447, 560, 595, 809
TatI WGTACW 1 cut(s) 570
TauI GCSGC 3 cut(s) 31, 416, 850
TfiI GAWTC 4 cut(s) 118, 357, 860, 923
Tru1I TTAA 3 cut(s) 330, 759, 795
Tru9I TTAA 3 cut(s) 330, 759, 795
TscAI CASTG 2 cut(s) 304, 346
TseFI GTSAC 3 cut(s) 79, 124, 729
TseI GCWGC 3 cut(s) 652, 721, 887
Tsp45I GTSAC 3 cut(s) 79, 124, 729
TspDTI ATGAA 4 cut(s) 149, 819, 891, 936
TspRI CASTG 2 cut(s) 304, 346
Tth111I GACNNNGTC 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 329
VneI GTGCAC 2 cut(s) 142, 302
VpaK11BI GGWCC 2 cut(s) 169, 439
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 2 cut(s) 174, 684
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 2 cut(s) 622, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.