AT4G05470

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000331
Physical Location & Seq
Reverse (-)
2763211 .. 2765351
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05470.1

Sequence Viewer

Length: 921 bp
ATGACAGCCTCCTCGAAAATGACATCCTCCACTACGTTGCTGTCGTTGTTCATGAAAGAAGATGAAGAAGGAAGAAACAAGAAAACGACAACCTCCACTACGTTGGAGTCGTTGCTGATGAAAGAGCGAAGAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCGTCTTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCATTTGTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGACTGCCTCATGTACAACTTTGATTTCGTGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCTTGCTAGAGATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTCAGCTACATTACCGATAGATCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAAACTAGGAGTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCACTCATGTATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACATTGAAGCTAAACTCCTTAGGCCGCCTATGGCCAGCCAGTGACAAGTATGACAGCAACGTGTTAGACGATATGGGGCCTCTCGAATGTGATGATGATGCTTTAGCAATTGCTGAAAGCATGCCCAAACTACACCACCTCCAGCTTATGGCTAACAGACTAACCAACACAGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTGTTTCAGGATTAGCCTTGTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTTGAGACGCCCCGGTGACTCAACCGCAGATTACCCATATAATGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

306

Amino Acids

34.65

Weight (kDa)

7.06

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 46 - 92 2e-11 F-box-like
F-box PF00646 46 - 89 1.1e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 515
AccB7I CCANNNNNTGG 2 cut(s) 730, 911
AccII CGCG 1 cut(s) 277
AciI CCGC 4 cut(s) 149, 262, 607, 894
AclI AACGTT 1 cut(s) 363
AclWI GGATC 2 cut(s) 150, 163
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 877
AfaI GTAC 2 cut(s) 293, 804
AfiI CCNNNNNNNGG 2 cut(s) 730, 911
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 3 cut(s) 509, 589, 760
AjnI CCWGG 2 cut(s) 339, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 6 cut(s) 157, 399, 554, 577, 592, 727
AluI AGCT 6 cut(s) 157, 399, 554, 577, 592, 727
Alw26I GTCTC 2 cut(s) 273, 868
AlwI GGATC 2 cut(s) 150, 163
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 4 cut(s) 559, 604, 614, 659
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 659
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 3 cut(s) 472, 776, 896
AvaI CYCGRG 1 cut(s) 515
AxyI CCTNAGG 1 cut(s) 601
BalI TGGCCA 1 cut(s) 616
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 303
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 2 cut(s) 341, 788
BclI TGATCA 1 cut(s) 861
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 2 cut(s) 273, 868
BfaI CTAG 2 cut(s) 353, 470
BfmI CTRYAG 1 cut(s) 555
BglI GCCNNNNNGGC 1 cut(s) 345
BisI GCNGC 2 cut(s) 176, 607
BlsI GCNGC 2 cut(s) 177, 608
Bme1390I CCNGG 3 cut(s) 341, 788, 882
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 3 cut(s) 341, 788, 882
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 670
BmuI ACTGGG 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 777
BplI GAGNNNNNCTC 4 cut(s) 270, 302, 373, 405
BpmI CTGGAG 1 cut(s) 707
Bpu10I CCTNAGC 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 400, 860
BpuMI CCSGG 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 877
BsaJI CCNNGG 3 cut(s) 340, 455, 880
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 730, 911
Bse1I ACTGG 4 cut(s) 140, 204, 546, 621
Bse21I CCTNAGG 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 500
BseBI CCWGG 2 cut(s) 341, 788
BseDI CCNNGG 3 cut(s) 340, 455, 880
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 730, 911
BseMI GCAATG 1 cut(s) 500
BseMII CTCAG 4 cut(s) 224, 349, 409, 416
BseNI ACTGG 4 cut(s) 140, 204, 546, 621
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 4 cut(s) 561, 606, 616, 661
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 2 cut(s) 152, 882
BslI CCNNNNNNNGG 2 cut(s) 730, 911
BsmAI GTCTC 2 cut(s) 273, 868
BsmBI CGTCTC 1 cut(s) 868
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 4 cut(s) 561, 606, 616, 661
BsoBI CYCGRG 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 6 cut(s) 142, 168, 331, 357, 413, 861
BspACI CCGC 4 cut(s) 149, 262, 607, 894
BspANI GGCC 4 cut(s) 561, 606, 616, 661
BspCNI CTCAG 4 cut(s) 223, 348, 408, 417
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 660
BspPI GGATC 2 cut(s) 150, 163
BsrDI GCAATG 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 4 cut(s) 140, 204, 546, 621
BssECI CCNNGG 3 cut(s) 340, 455, 880
BssMI GATC 6 cut(s) 142, 168, 331, 357, 413, 861
BssNI GRCGYC 1 cut(s) 877
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 341, 788
Bst4CI ACNGT 1 cut(s) 776
BstACI GRCGYC 1 cut(s) 877
BstAUI TGTACA 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 350, 568, 618, 704
BstDEI CTNAG 6 cut(s) 182, 210, 335, 395, 425, 601
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 6 cut(s) 145, 171, 334, 360, 416, 864
BstMAI GTCTC 2 cut(s) 273, 868
BstMBI GATC 6 cut(s) 142, 168, 331, 357, 413, 861
BstMWI GCNNNNNNNGC 2 cut(s) 345, 567
BstNI CCWGG 2 cut(s) 341, 788
BstNSI RCATGY 2 cut(s) 316, 706
BstPAI GACNNNNGTC 1 cut(s) 777
BstSCI CCNGG 3 cut(s) 339, 786, 880
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 142
Bsu36I CCTNAGG 1 cut(s) 601
BsuRI GGCC 4 cut(s) 561, 606, 616, 661
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 628
Cac8I GCNNGC 4 cut(s) 350, 568, 618, 704
CciI TCATGA 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 659
CseI GACGC 3 cut(s) 167, 243, 885
Csp6I GTAC 2 cut(s) 292, 803
CviAII CATG 5 cut(s) 52, 289, 313, 531, 703
CviQI GTAC 2 cut(s) 292, 803
DdeI CTNAG 6 cut(s) 182, 210, 335, 395, 425, 601
DpnI GATC 6 cut(s) 144, 170, 333, 359, 415, 863
DpnII GATC 6 cut(s) 142, 168, 331, 357, 413, 861
DraI TTTAAA 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 614
EciI GGCGGA 2 cut(s) 138, 277
Eco130I CCWWGG 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 515
EcoO109I RGGNCCY 1 cut(s) 659
EcoRII CCWGG 2 cut(s) 339, 786
EcoT14I CCWWGG 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 455
Esp3I CGTCTC 1 cut(s) 868
FaeI CATG 5 cut(s) 55, 292, 316, 534, 706
FatI CATG 5 cut(s) 51, 288, 312, 530, 702
FbaI TGATCA 1 cut(s) 861
Fnu4HI GCNGC 2 cut(s) 176, 607
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 2 cut(s) 176, 607
FspBI CTAG 2 cut(s) 353, 470
GluI GCNGC 2 cut(s) 176, 607
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 4 cut(s) 561, 606, 616, 661
HapII CCGG 2 cut(s) 152, 882
HgaI GACGC 3 cut(s) 167, 243, 885
Hin1I GRCGYC 1 cut(s) 877
Hin1II CATG 5 cut(s) 55, 292, 316, 534, 706
HinfI GANTC 5 cut(s) 107, 386, 421, 835, 887
HpaII CCGG 2 cut(s) 152, 882
HphI GGTGA 3 cut(s) 472, 776, 896
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 213, 426
Hpy188III TCNNGA 8 cut(s) 52, 307, 379, 665, 770, 817, 832, 839
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 2 cut(s) 237, 776
HpyAV CCTTC 3 cut(s) 62, 208, 261
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 4 cut(s) 35, 101, 363, 642
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 567
HpyF3I CTNAG 6 cut(s) 182, 210, 335, 395, 425, 601
HpySE526I ACGT 4 cut(s) 35, 101, 363, 642
Hsp92I GRCGYC 1 cut(s) 877
Hsp92II CATG 5 cut(s) 55, 292, 316, 534, 706
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 6 cut(s) 142, 168, 331, 357, 413, 861
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 670
MaeI CTAG 2 cut(s) 353, 470
MaeII ACGT 4 cut(s) 35, 101, 363, 642
MaeIII GTNAC 5 cut(s) 320, 460, 520, 623, 884
MalI GATC 6 cut(s) 144, 170, 333, 359, 415, 863
MboI GATC 6 cut(s) 142, 168, 331, 357, 413, 861
MboII GAAGA 5 cut(s) 71, 77, 84, 137, 141
MfeI CAATTG 2 cut(s) 486, 690
MflI RGATCY 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 3 cut(s) 486, 495, 690
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 2 cut(s) 116, 881
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 616
MscI TGGCCA 1 cut(s) 616
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 798
Msp20I TGGCCA 1 cut(s) 616
MspI CCGG 2 cut(s) 152, 882
MspR9I CCNGG 3 cut(s) 341, 788, 882
MunI CAATTG 2 cut(s) 486, 690
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 2 cut(s) 341, 788
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 345, 567
NciI CCSGG 1 cut(s) 882
NdeII GATC 6 cut(s) 142, 168, 331, 357, 413, 861
NlaIII CATG 5 cut(s) 55, 292, 316, 534, 706
NlaIV GGNNCC 1 cut(s) 660
NmuCI GTSAC 5 cut(s) 320, 460, 520, 623, 884
NspI RCATGY 2 cut(s) 316, 706
PaeI GCATGC 1 cut(s) 706
PaeR7I CTCGAG 1 cut(s) 515
PagI TCATGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 3 cut(s) 41, 107, 648
PctI GAATGC 1 cut(s) 766
PfeI GAWTC 3 cut(s) 386, 421, 835
PflMI CCANNNNNTGG 2 cut(s) 730, 911
PkrI GCNGC 2 cut(s) 177, 608
PleI GAGTC 2 cut(s) 115, 881
PpsI GAGTC 2 cut(s) 115, 881
PshAI GACNNNNGTC 1 cut(s) 777
Psp1406I AACGTT 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 339, 786
PspGI CCWGG 2 cut(s) 339, 786
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 1 cut(s) 659
PspXI VCTCGAGB 1 cut(s) 515
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 293, 804
RsaNI GTAC 2 cut(s) 292, 803
RseI CAYNNNNRTG 1 cut(s) 798
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 2 cut(s) 176, 607
Sau3AI GATC 6 cut(s) 142, 168, 331, 357, 413, 861
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 2 cut(s) 116, 881
ScrFI CCNGG 3 cut(s) 341, 788, 882
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 515
SlaI CTCGAG 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 3 cut(s) 379, 515, 839
SmoI CTYRAG 3 cut(s) 379, 515, 839
SphI GCATGC 1 cut(s) 706
Sse9I AATT 3 cut(s) 486, 495, 690
SsiI CCGC 4 cut(s) 149, 262, 607, 894
SspMI CTAG 2 cut(s) 353, 470
StyD4I CCNGG 3 cut(s) 339, 786, 880
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 4 cut(s) 38, 104, 366, 645
TaqI TCGA 6 cut(s) 14, 167, 254, 516, 666, 771
TasI AATT 3 cut(s) 486, 495, 690
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 3 cut(s) 386, 421, 835
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 5 cut(s) 320, 460, 520, 623, 884
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 5 cut(s) 320, 460, 520, 623, 884
TspDTI ATGAA 5 cut(s) 40, 68, 78, 134, 384
TspRI CASTG 1 cut(s) 628
Van91I CCANNNNNTGG 2 cut(s) 730, 911
XapI RAATTY 1 cut(s) 495
XceI RCATGY 2 cut(s) 316, 706
XhoI CTCGAG 1 cut(s) 515
XspI CTAG 2 cut(s) 353, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.