Rh5DG117400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000331
Physical Location & Seq
Forward (+)
10601403 .. 10602346
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG117400.1

Sequence Viewer

Length: 363 bp
ATGGCCGAATCCGGCCAATGCCGAAAGCGAAACTGGACGGAACTCCCTGACGAGTTAACGGCGGCGATTCTTTCACGGCTGGGAGTGATGGAGATCCTAGAGAGCGCTCAGAAAGTTTGCATGAAGTGGCGTAAAATCTCCAAGGACCCTCTCTTCTGGCGCAAAATCGACATGCGCAACGATGGTGATCTTGATGACTGGGACTATGTGTCCATGTTCCGCCACGTCGTTGATCGGAGCTCCGGTAATGTCGTCGATATCAATATCGAGCACTTCGGCACCGACAAACTACTCACCTTTATCACCGAAAGTTCAAAGTACAAAGATGAGATATATGTTGAATTTTATGCATTTGCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

120

Amino Acids

14.11

Weight (kDa)

5.18

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 58 4.9e-10 F-box-like
F-box PF00646 12 - 55 1.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 2 cut(s) 62, 220
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 2 cut(s) 3, 13
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 320
AfeI AGCGCT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 315, 341
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 1 cut(s) 226
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw21I GWGCWC 2 cut(s) 242, 273
AlwI GGATC 1 cut(s) 88
Aor51HI AGCGCT 1 cut(s) 106
AoxI GGCC 2 cut(s) 3, 13
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 3 cut(s) 107, 162, 177
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 197, 286, 295
AvaII GGWCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 242, 273
BccI CCATC 2 cut(s) 82, 176
BceAI ACGGC 2 cut(s) 75, 92
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 147, 280
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BsaBI GATNNNNATC 2 cut(s) 92, 186
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bse1I ACTGG 2 cut(s) 38, 203
Bse8I GATNNNNATC 2 cut(s) 92, 186
BseDI CCNNGG 1 cut(s) 141
BseJI GATNNNNATC 2 cut(s) 92, 186
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 38, 203
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 5, 15
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 2 cut(s) 242, 273
BsiSI CCGG 2 cut(s) 12, 243
BslFI GGGAC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 5, 15
Bsp1286I GDGCHC 2 cut(s) 242, 273
Bsp143I GATC 3 cut(s) 93, 187, 232
BspACI CCGC 2 cut(s) 62, 220
BspANI GGCC 2 cut(s) 5, 15
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 147, 280
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 278
BsrI ACTGG 2 cut(s) 38, 203
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 93, 187, 232
BssT1I CCWWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 107, 162, 177
BstKTI GATC 3 cut(s) 96, 190, 235
BstMBI GATC 3 cut(s) 93, 187, 232
BstNSI RCATGY 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 2 cut(s) 5, 15
BtrI CACGTC 1 cut(s) 226
CfoI GCGC 3 cut(s) 107, 162, 177
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 121, 172, 214
CviJI RGCY 4 cut(s) 5, 15, 79, 240
CviKI_1 RGCY 4 cut(s) 5, 15, 79, 240
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 95, 189, 234
DpnII GATC 3 cut(s) 93, 187, 232
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 2 cut(s) 3, 13
Eam1104I CTCTTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 145
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 124, 175, 217
FaiI YATR 7 cut(s) 122, 173, 207, 215, 334, 336, 348
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 120, 171, 213
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 98
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 3 cut(s) 106, 161, 176
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 5, 15
HapII CCGG 2 cut(s) 12, 243
HhaI GCGC 3 cut(s) 107, 162, 177
Hin1II CATG 3 cut(s) 124, 175, 217
Hin6I GCGC 3 cut(s) 105, 160, 175
HinP1I GCGC 3 cut(s) 105, 160, 175
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 8, 67
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 2 cut(s) 12, 243
HphI GGTGA 3 cut(s) 197, 286, 295
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 111, 237
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 230, 257
HpyCH4IV ACGT 2 cut(s) 225, 359
HpyCH4V TGCA 3 cut(s) 120, 350, 356
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 225, 359
Hsp92II CATG 3 cut(s) 124, 175, 217
HspAI GCGC 3 cut(s) 105, 160, 175
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 93, 187, 232
LmnI GCTCC 2 cut(s) 237, 245
LpnPI CCDG 7 cut(s) 19, 25, 60, 65, 142, 184, 256
MaeI CTAG 1 cut(s) 98
MaeII ACGT 2 cut(s) 225, 359
MalI GATC 3 cut(s) 95, 189, 234
MboI GATC 3 cut(s) 93, 187, 232
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 242, 273
MluCI AATT 1 cut(s) 341
MnlI CCTC 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 1 cut(s) 56
MspI CCGG 2 cut(s) 12, 243
NdeII GATC 3 cut(s) 93, 187, 232
NlaIII CATG 3 cut(s) 124, 175, 217
NlaIV GGNNCC 2 cut(s) 147, 280
NsbI TGCGCA 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 2 cut(s) 8, 67
PkrI GCNGC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 147, 280
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 93, 187, 232
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 2 cut(s) 242, 273
SetI ASST 4 cut(s) 228, 242, 299, 362
SinI GGWCC 1 cut(s) 145
Sse9I AATT 1 cut(s) 341
SsiI CCGC 2 cut(s) 62, 220
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 242
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 2 cut(s) 228, 362
TaqI TCGA 3 cut(s) 168, 255, 267
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 8, 67
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.