Rorug02G0530100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000331
Physical Location & Seq
Reverse (-)
66003909 .. 66006187
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0530100.1

Sequence Viewer

Length: 678 bp
ATGGTTGATTTAGAATGTGATGATGGGAGACTCAGTGCAAGAGTGAAGTATGACTTGAGTGACGATTTCAATTTGCTCAGCTTACAAATGAGCCACATATGTCTCATGGCATTGTCAATGTTGATTACAAGCTGGGATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCGAGAGCGAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAGCGAAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGTTCCAAACATTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGCACCATACCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCTGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

225

Amino Acids

24.62

Weight (kDa)

4.75

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA PF00627 66 - 103 2.2e-10 UBA/TS-N domain
XPC-binding PF09280 164 - 219 6.3e-22 XPC-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 272
AccIII TCCGGA 1 cut(s) 410
AciI CCGC 2 cut(s) 272, 446
AclWI GGATC 2 cut(s) 480, 493
AcsI RAATTY 2 cut(s) 172, 555
AcuI CTGAAG 1 cut(s) 623
AcvI CACGTG 1 cut(s) 260
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 410, 425, 662
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 70, 209
AluBI AGCT 4 cut(s) 81, 132, 164, 601
AluI AGCT 4 cut(s) 81, 132, 164, 601
Alw21I GWGCWC 4 cut(s) 265, 418, 481, 624
Alw26I GTCTC 2 cut(s) 22, 107
Alw44I GTGCAC 2 cut(s) 261, 477
AlwI GGATC 2 cut(s) 480, 493
AlwNI CAGNNNCTG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 410
ApaLI GTGCAC 2 cut(s) 261, 477
ApeKI GCWGC 2 cut(s) 164, 571
ApoI RAATTY 2 cut(s) 172, 555
AseI ATTAAT 1 cut(s) 611
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 428
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 2 cut(s) 265, 481
BamHI GGATCC 1 cut(s) 485
BbrPI CACGTG 1 cut(s) 260
Bbv12I GWGCWC 4 cut(s) 265, 418, 481, 624
BbvI GCAGC 2 cut(s) 151, 558
BccI CCATC 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 22, 107
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 572
BisI GCNGC 3 cut(s) 165, 273, 572
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 3 cut(s) 166, 274, 573
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 430, 487
Bpu1102I GCTNAGC 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 76, 215
BsaAI YACGTR 1 cut(s) 260
BsaWI WCCGGW 2 cut(s) 410, 461
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 410, 425, 662
Bse3DI GCAATG 1 cut(s) 524
BseAI TCCGGA 1 cut(s) 410
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 410, 425, 662
BseMI GCAATG 1 cut(s) 524
BseMII CTCAG 2 cut(s) 46, 91
BseSI GKGCMC 2 cut(s) 265, 481
BseXI GCAGC 2 cut(s) 151, 558
BseYI CCCAGC 1 cut(s) 132
BsiHKAI GWGCWC 4 cut(s) 265, 418, 481, 624
BsiSI CCGG 2 cut(s) 411, 462
BslFI GGGAC 2 cut(s) 254, 414
BslI CCNNNNNNNGG 3 cut(s) 410, 425, 662
BsmAI GTCTC 2 cut(s) 22, 107
BsmFI GGGAC 2 cut(s) 254, 414
Bsp1286I GDGCHC 4 cut(s) 265, 418, 481, 624
Bsp13I TCCGGA 1 cut(s) 410
Bsp143I GATC 1 cut(s) 485
Bsp1720I GCTNAGC 1 cut(s) 77
BspACI CCGC 2 cut(s) 272, 446
BspCNI CTCAG 2 cut(s) 45, 90
BspEI TCCGGA 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 430, 487
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 2 cut(s) 480, 493
BsrBI CCGCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 524
BssMI GATC 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 253, 459
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 32, 77, 500
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 1 cut(s) 488
BstMAI GTCTC 2 cut(s) 22, 107
BstMBI GATC 1 cut(s) 485
BstMWI GCNNNNNNNGC 4 cut(s) 269, 338, 371, 571
BstSFI CTRYAG 1 cut(s) 572
BstSLI GKGCMC 2 cut(s) 265, 481
BstV1I GCAGC 2 cut(s) 151, 558
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 2 cut(s) 303, 348
BtsIMutI CAGTG 4 cut(s) 40, 303, 348, 455
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 106, 568
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 32, 77, 500
DpnI GATC 1 cut(s) 487
DpnII GATC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 623
Eco72I CACGTG 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 428
FaeI CATG 2 cut(s) 109, 571
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 2 cut(s) 254, 414
FatI CATG 2 cut(s) 105, 567
FauNDI CATATG 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 165, 273, 572
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 165, 273, 572
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 530
GluI GCNGC 3 cut(s) 165, 273, 572
GsaI CCCAGC 1 cut(s) 136
HapII CCGG 2 cut(s) 411, 462
HgaI GACGC 1 cut(s) 156
HhaI GCGC 1 cut(s) 531
Hin1II CATG 2 cut(s) 109, 571
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HinfI GANTC 1 cut(s) 30
HpaII CCGG 2 cut(s) 411, 462
Hpy166II GTNNAC 3 cut(s) 263, 301, 479
Hpy188I TCNGA 1 cut(s) 670
Hpy188III TCNNGA 5 cut(s) 194, 323, 411, 617, 659
Hpy8I GTNNAC 3 cut(s) 263, 301, 479
HpyAV CCTTC 2 cut(s) 647, 665
HpyCH4III ACNGT 2 cut(s) 253, 459
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 7 cut(s) 38, 142, 263, 341, 365, 479, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 338, 371, 571
HpyF3I CTNAG 3 cut(s) 32, 77, 500
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 2 cut(s) 109, 571
HspAI GCGC 1 cut(s) 529
Kpn2I TCCGGA 1 cut(s) 410
Kzo9I GATC 1 cut(s) 485
LmnI GCTCC 3 cut(s) 403, 413, 619
Lsp1109I GCAGC 2 cut(s) 151, 558
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 3 cut(s) 59, 253, 537
MalI GATC 1 cut(s) 487
MbiI CCGCTC 1 cut(s) 272
MboI GATC 1 cut(s) 485
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 4 cut(s) 265, 418, 481, 624
MluCI AATT 6 cut(s) 70, 172, 235, 421, 555, 612
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 3 cut(s) 500, 655, 666
MroI TCCGGA 1 cut(s) 410
MseI TTAA 4 cut(s) 279, 605, 611, 644
MspI CCGG 2 cut(s) 411, 462
MwoI GCNNNNNNNGC 4 cut(s) 269, 338, 371, 571
NdeI CATATG 1 cut(s) 98
NdeII GATC 1 cut(s) 485
NlaIII CATG 2 cut(s) 109, 571
NlaIV GGNNCC 2 cut(s) 430, 487
NmuCI GTSAC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PkrI GCNGC 3 cut(s) 166, 274, 573
PleI GAGTC 1 cut(s) 24
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 428
PshBI ATTAAT 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 428
PspCI CACGTG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 430, 487
PspPI GGNCC 1 cut(s) 428
PspPPI RGGWCCY 1 cut(s) 428
PstI CTGCAG 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 4 cut(s) 279, 605, 611, 644
SatI GCNGC 3 cut(s) 165, 273, 572
Sau3AI GATC 1 cut(s) 485
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 24
SduI GDGCHC 4 cut(s) 265, 418, 481, 624
SfcI CTRYAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 428
SmlI CTYRAG 3 cut(s) 55, 194, 659
SmoI CTYRAG 3 cut(s) 55, 194, 659
Sse9I AATT 6 cut(s) 70, 172, 235, 421, 555, 612
SsiI CCGC 2 cut(s) 272, 446
SspMI CTAG 1 cut(s) 315
TaaI ACNGT 2 cut(s) 253, 459
TaiI ACGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 268, 492
TasI AATT 6 cut(s) 70, 172, 235, 421, 555, 612
TatI WGTACW 1 cut(s) 309
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 4 cut(s) 279, 605, 611, 644
Tru9I TTAA 4 cut(s) 279, 605, 611, 644
TscAI CASTG 4 cut(s) 40, 303, 348, 462
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 164, 571
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 4 cut(s) 40, 303, 348, 462
VneI GTGCAC 2 cut(s) 261, 477
VpaK11BI GGWCC 1 cut(s) 428
VspI ATTAAT 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 2 cut(s) 172, 555
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.