Rw2G013010

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000331
Physical Location & Seq
Reverse (-)
13566556 .. 13567989
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013010.1

Sequence Viewer

Length: 819 bp
ATGGCCAAATCCACCTACCAAACCTACCGGCGCCGAACTCGAAGCTACCGTAACTGGCTGGAGCTCCCGGACGACGTCACCGCTTCCATTCTCTCCCGCCTCGGCGCCATCGAAATCCTGACAAACGACGGCTTTCTCCGCGATTACGACTTCGACTTGGACAAGCTGTGCCGCCACGGCGTTGATCGGAGCTCCGGTTGTCTTGTCGATATCAATGTCGAACACTTCGGCACCGATGAGCTCCTCAAGTATATCACTAATAGTTCAAGTGGAATTAGACGCCTCCGTTTGGTCTGTTGTTATGGCATAACCGATGAGGGGTTGATTGAAGTGGCTTCGAAACTTCCGCTGCTGGAGCACCTTGAAATTTCTTTCAGCTTTGCCTCTGCTCAATCCTTGGAAGTGATTGGGCGCTCTTGCCCTCTTTTGAAATCACTCAAACTGAACAAATATGGGTACAGATACCCGTATGATGAGTGCGATGATGATGCACTTGCTATAGCATCCACAATGCATGATCTACACCACCTGCAGCTTTGCGGTAATAAGCTGACCAAAGATGGCTTGCAGAAAATCCTTGATTGTTGTCCAAATCTTGAGTCACTTGATCTGCGCAAGTGCTTCAATATCAATTTCGGGGTAGTTTCGAAAAGAAGATGCAGTAAACGAATTAAAAGTTTACGGCTTCCTGATGATTCCACCGATGACTATGAGTTTGATCGTGCAAATCGTAGGGAGTTATATGCTCAAACCCATTGCGACCCAGATTATGGTGACTTCCTCCTATTAGGACGTTCTGTTTTTGGTCGAGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

272

Amino Acids

31.25

Weight (kDa)

6.18

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 159 - 232 1.9e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 537
AatII GACGTC 1 cut(s) 78
Acc16I TGCGCA 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 537
AccB1I GGYRCC 3 cut(s) 30, 104, 230
AccB7I CCANNNNNTGG 1 cut(s) 770
AccII CGCG 1 cut(s) 141
AciI CCGC 6 cut(s) 81, 97, 139, 172, 347, 540
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 366
AcyI GRCGYC 4 cut(s) 31, 75, 105, 280
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 289, 318, 770
AgsI TTSAA 5 cut(s) 267, 329, 365, 430, 625
AluBI AGCT 8 cut(s) 45, 64, 166, 192, 241, 378, 535, 550
AluI AGCT 8 cut(s) 45, 64, 166, 192, 241, 378, 535, 550
Alw21I GWGCWC 4 cut(s) 66, 194, 243, 360
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 349, 532
ApoI RAATTY 1 cut(s) 366
ArsI GACNNNNNNTTYG 4 cut(s) 584, 616, 698, 730
AspLEI GCGC 4 cut(s) 33, 107, 414, 615
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 70, 785
AsuII TTCGAA 2 cut(s) 338, 647
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 30, 104, 230
BanII GRGCYC 3 cut(s) 66, 194, 243
Bbv12I GWGCWC 4 cut(s) 66, 194, 243, 360
BbvI GCAGC 2 cut(s) 336, 544
BccI CCATC 2 cut(s) 116, 554
BceAI ACGGC 3 cut(s) 145, 193, 698
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BcnI CCSGG 1 cut(s) 68
BfmI CTRYAG 2 cut(s) 498, 530
BfoI RGCGCY 3 cut(s) 34, 108, 415
BfuAI ACCTGC 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 172, 350, 533
BlsI GCNGC 3 cut(s) 173, 351, 534
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 3 cut(s) 32, 106, 232
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 3 cut(s) 478, 512, 647
BpmI CTGGAG 2 cut(s) 80, 374
Bpu14I TTCGAA 2 cut(s) 338, 647
BpuEI CTTGAG 2 cut(s) 230, 617
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 4 cut(s) 31, 75, 105, 280
BsaJI CCNNGG 3 cut(s) 100, 175, 396
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 318, 770
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 754
BseDI CCNNGG 3 cut(s) 100, 175, 396
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 3 cut(s) 289, 318, 770
BseMI GCAATG 1 cut(s) 754
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 336, 544
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 3 cut(s) 30, 104, 230
BsiHKAI GWGCWC 4 cut(s) 66, 194, 243, 360
BsiSI CCGG 3 cut(s) 28, 68, 195
BslI CCNNNNNNNGG 3 cut(s) 289, 318, 770
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 2 cut(s) 338, 647
Bsp1286I GDGCHC 4 cut(s) 66, 194, 243, 360
Bsp143I GATC 4 cut(s) 184, 517, 607, 718
BspACI CCGC 6 cut(s) 81, 97, 139, 172, 347, 540
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 32, 106, 232
BspMAI CTGCAG 1 cut(s) 534
BspMI ACCTGC 1 cut(s) 537
BspT104I TTCGAA 2 cut(s) 338, 647
BspT107I GGYRCC 3 cut(s) 30, 104, 230
BsrDI GCAATG 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 3 cut(s) 100, 175, 396
BssMI GATC 4 cut(s) 184, 517, 607, 718
BssNI GRCGYC 4 cut(s) 31, 75, 105, 280
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 50
BstACI GRCGYC 4 cut(s) 31, 75, 105, 280
BstBI TTCGAA 2 cut(s) 338, 647
BstC8I GCNNGC 1 cut(s) 566
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 503
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 3 cut(s) 34, 108, 415
BstHHI GCGC 4 cut(s) 33, 107, 414, 615
BstKTI GATC 4 cut(s) 187, 520, 610, 721
BstMBI GATC 4 cut(s) 184, 517, 607, 718
BstMWI GCNNNNNNNGC 3 cut(s) 138, 177, 355
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 498, 530
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 336, 544
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 566
CfoI GCGC 4 cut(s) 33, 107, 414, 615
Cfr10I RCCGGY 1 cut(s) 27
CseI GACGC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 515
CviQI GTAC 1 cut(s) 457
DinI GGCGCC 2 cut(s) 32, 106
DpnI GATC 4 cut(s) 186, 519, 609, 720
DpnII GATC 4 cut(s) 184, 517, 607, 718
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 3 cut(s) 64, 192, 241
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 3 cut(s) 66, 194, 243
Eco32I GATATC 1 cut(s) 211
Eco53kI GAGCTC 3 cut(s) 64, 192, 241
EcoICRI GAGCTC 3 cut(s) 64, 192, 241
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 516
EcoT38I GRGCYC 3 cut(s) 66, 194, 243
EgeI GGCGCC 2 cut(s) 32, 106
EheI GGCGCC 2 cut(s) 32, 106
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 518
FatI CATG 1 cut(s) 514
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 172, 350, 533
FokI GGATG 1 cut(s) 490
FriOI GRGCYC 3 cut(s) 66, 194, 243
Fsp4HI GCNGC 3 cut(s) 172, 350, 533
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 4 cut(s) 32, 106, 413, 614
GluI GCNGC 3 cut(s) 172, 350, 533
GsuI CTGGAG 2 cut(s) 80, 374
HaeII RGCGCY 3 cut(s) 34, 108, 415
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 28, 68, 195
HgaI GACGC 1 cut(s) 288
HhaI GCGC 4 cut(s) 33, 107, 414, 615
Hin1I GRCGYC 4 cut(s) 31, 75, 105, 280
Hin1II CATG 1 cut(s) 518
Hin6I GCGC 4 cut(s) 31, 105, 412, 613
HinP1I GCGC 4 cut(s) 31, 105, 412, 613
HinfI GANTC 2 cut(s) 599, 695
HpaII CCGG 3 cut(s) 28, 68, 195
HphI GGTGA 2 cut(s) 70, 785
Hpy166II GTNNAC 2 cut(s) 665, 680
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 4 cut(s) 118, 596, 689, 809
Hpy8I GTNNAC 2 cut(s) 665, 680
Hpy99I CGWCG 2 cut(s) 77, 131
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 75, 793
HpyCH4V TGCA 6 cut(s) 491, 514, 532, 568, 660, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 177, 355
HpySE526I ACGT 2 cut(s) 75, 793
Hsp92I GRCGYC 4 cut(s) 31, 75, 105, 280
Hsp92II CATG 1 cut(s) 518
HspAI GCGC 4 cut(s) 31, 105, 412, 613
KasI GGCGCC 2 cut(s) 30, 104
Kzo9I GATC 4 cut(s) 184, 517, 607, 718
LmnI GCTCC 6 cut(s) 61, 69, 189, 197, 246, 355
Lsp1109I GCAGC 2 cut(s) 336, 544
LweI GCATC 3 cut(s) 478, 512, 647
MaeII ACGT 2 cut(s) 75, 793
MaeIII GTNAC 4 cut(s) 50, 76, 600, 773
MalI GATC 4 cut(s) 186, 519, 609, 720
MboI GATC 4 cut(s) 184, 517, 607, 718
MboII GAAGA 1 cut(s) 666
MhlI GDGCHC 4 cut(s) 66, 194, 243, 360
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 273, 366, 631, 669
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 2 cut(s) 31, 105
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 7 cut(s) 110, 254, 293, 310, 394, 432, 791
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 516
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 672
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 349
MspI CCGG 3 cut(s) 28, 68, 195
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 138, 177, 355
NarI GGCGCC 2 cut(s) 31, 105
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 184, 517, 607, 718
NlaIII CATG 1 cut(s) 518
NlaIV GGNNCC 3 cut(s) 32, 106, 232
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 3 cut(s) 76, 600, 773
NsbI TGCGCA 1 cut(s) 614
NsiI ATGCAT 1 cut(s) 516
NspV TTCGAA 2 cut(s) 338, 647
PaqCI CACCTGC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 3 cut(s) 46, 108, 727
PfeI GAWTC 1 cut(s) 695
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 770
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 3 cut(s) 173, 351, 534
PleI GAGTC 1 cut(s) 607
PluTI GGCGCC 2 cut(s) 34, 108
PpsI GAGTC 1 cut(s) 607
Psp124BI GAGCTC 3 cut(s) 66, 194, 243
PspN4I GGNNCC 3 cut(s) 32, 106, 232
PstI CTGCAG 1 cut(s) 534
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 3 cut(s) 66, 194, 243
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 3 cut(s) 172, 350, 533
Sau3AI GATC 4 cut(s) 184, 517, 607, 718
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 4 cut(s) 66, 194, 243, 360
SfaNI GCATC 3 cut(s) 478, 512, 647
SfcI CTRYAG 2 cut(s) 498, 530
SfoI GGCGCC 2 cut(s) 32, 106
SfuI TTCGAA 2 cut(s) 338, 647
SmlI CTYRAG 2 cut(s) 245, 596
SmoI CTYRAG 2 cut(s) 245, 596
Sse9I AATT 4 cut(s) 273, 366, 631, 669
SsiI CCGC 6 cut(s) 81, 97, 139, 172, 347, 540
SspDI GGCGCC 2 cut(s) 30, 104
SstI GAGCTC 3 cut(s) 66, 194, 243
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 2 cut(s) 78, 796
TaqI TCGA 8 cut(s) 40, 111, 153, 207, 219, 338, 647, 808
TasI AATT 4 cut(s) 273, 366, 631, 669
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 695
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 3 cut(s) 76, 600, 773
TseI GCWGC 2 cut(s) 349, 532
Tsp45I GTSAC 3 cut(s) 76, 600, 773
TspGWI ACGGA 1 cut(s) 275
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 770
XapI RAATTY 1 cut(s) 366
ZraI GACGTC 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.