Rh2AG596900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000331
Physical Location & Seq
Reverse (-)
82706735 .. 82707010
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG596900.1

Sequence Viewer

Length: 276 bp
ATGCATGGTTTACAACAGCTCCAGATATTTGGAAATAGGGTGACTAACAAGGGCTTGCAAGCCATTCTTGATGGTTGTCCATGTCTTGAGTCACTTGATCTGCGTCGTTGTTTCAATCTTAAGGTGGAAGGAGATTTGAAAAGAAGGTGCTTTCAAGGAATTAAACAGTTGCGGCTTCCCGATGATTCTACAGATGACTATGAACTTGTTGCCACAGATAAAATTGTTTACCAACTGTACCGGTCTTTTCAGAGTACATCAAATTTAATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

91

Amino Acids

10.53

Weight (kDa)

7.65

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AcsI RAATTY 1 cut(s) 262
AfaI GTAC 2 cut(s) 239, 256
AflII CTTAAG 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 3 cut(s) 115, 139, 155
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
ApoI RAATTY 1 cut(s) 262
AsiGI ACCGGT 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 52
BccI CCATC 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 107
BsaWI WCCGGW 1 cut(s) 240
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 240
BsiSI CCGG 1 cut(s) 241
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 240
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 168, 237
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 56, 60
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 56, 60
Cfr10I RCCGGY 1 cut(s) 240
CseI GACGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 238, 255
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 2 cut(s) 5, 81
CviJI RGCY 4 cut(s) 19, 54, 62, 175
CviKI_1 RGCY 4 cut(s) 19, 54, 62, 175
CviQI GTAC 2 cut(s) 238, 255
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 84
FaiI YATR 4 cut(s) 6, 82, 201, 271
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 2 cut(s) 4, 80
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 5
HapII CCGG 1 cut(s) 241
HgaI GACGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 8, 84
HinfI GANTC 2 cut(s) 89, 185
HpaII CCGG 1 cut(s) 241
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 11, 229
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 4 cut(s) 22, 68, 86, 179
Hpy8I GTNNAC 2 cut(s) 11, 229
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 122, 138
HpyCH4III ACNGT 2 cut(s) 168, 237
HpyCH4V TGCA 2 cut(s) 4, 58
Hsp92II CATG 2 cut(s) 8, 84
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 2 cut(s) 35, 254
MaeIII GTNAC 2 cut(s) 40, 90
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MluCI AATT 3 cut(s) 159, 222, 262
MlyI GAGTC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 120, 162, 266
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 241
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 8, 84
NmuCI GTSAC 2 cut(s) 40, 90
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 1 cut(s) 174
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
RsaI GTAC 2 cut(s) 239, 256
RsaNI GTAC 2 cut(s) 238, 255
SaqAI TTAA 3 cut(s) 120, 162, 266
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 98
SetI ASST 3 cut(s) 21, 126, 149
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 86, 119
SmoI CTYRAG 2 cut(s) 86, 119
Sse9I AATT 3 cut(s) 159, 222, 262
SsiI CCGC 1 cut(s) 172
TaaI ACNGT 2 cut(s) 168, 237
TasI AATT 3 cut(s) 159, 222, 262
TatI WGTACW 1 cut(s) 254
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 120, 162, 266
Tru9I TTAA 3 cut(s) 120, 162, 266
TseFI GTSAC 2 cut(s) 40, 90
Tsp45I GTSAC 2 cut(s) 40, 90
TspDTI ATGAA 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 119
XapI RAATTY 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.