FvH4_1g14800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000331
Physical Location & Seq
Reverse (-)
8271237 .. 8272853
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14800.t1

Sequence Viewer

Length: 555 bp
ATGGCCAAATCCCCCTGCCAAACGTACCGGCGCCGAACCCGAAGCTACCGGAACTGGCTGGAGCTCCCGGAGGATGTCACGGCGTCGATACTCTCCCGCCTCGACGCCATCGCAATCCTGACGCGAGCTCAGAAGGTGTGCATGAAGTGGCGCAGAATCTGCAAGGACCGTCTCATGTGGCGCACCATCGACATGAGAAACGACGGGTTTCTCCGGGATTATGACTTCTACTTGGAAAAGATGTGCCGCCACGGCGTTGATTTGAGCTCCGGTGGTCTGGTCGATATCAATGTCGAGCATTTCGGCACCGATGAGCTCCTCAAGTATATCACTAACAGTTCGAGTGGAATTAGACGCCTCCGTTTAGTCTGTTGTTACGGCATAACCGATGAGGGATTGATTGAAGTGGCTTCGAAACTTCCGCTGCTGGAACACCTTGAAATCTCTTTCAACTTTGCCTCTGCTCAGTCTCTAGAAGTGATTGGGCGCGCTTGCCCTCTCTTGAAGTTACTCAAGCTGAACAAGTATGGGTACGTACAGATACCCGTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

185

Amino Acids

21.27

Weight (kDa)

9.11

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 65 2.2e-10 F-box-like
F-box PF00646 19 - 61 7.5e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 30, 305
AccII CGCG 2 cut(s) 124, 489
AciI CCGC 3 cut(s) 97, 247, 422
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 4 cut(s) 31, 83, 105, 355
AfaI GTAC 3 cut(s) 26, 533, 537
AgsI TTSAA 4 cut(s) 404, 440, 451, 505
AluBI AGCT 6 cut(s) 45, 64, 128, 267, 316, 517
AluI AGCT 6 cut(s) 45, 64, 128, 267, 316, 517
Alw21I GWGCWC 4 cut(s) 66, 130, 269, 318
Alw26I GTCTC 2 cut(s) 176, 474
AlwNI CAGNNNCTG 1 cut(s) 159
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 424
AspLEI GCGC 5 cut(s) 33, 153, 183, 489, 491
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 2 cut(s) 68, 215
AsuII TTCGAA 1 cut(s) 413
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 30, 305
BanII GRGCYC 4 cut(s) 66, 130, 269, 318
Bbv12I GWGCWC 4 cut(s) 66, 130, 269, 318
BbvI GCAGC 1 cut(s) 411
BccI CCATC 2 cut(s) 116, 194
BceAI ACGGC 3 cut(s) 96, 268, 394
BcnI CCSGG 2 cut(s) 68, 215
BcoDI GTCTC 2 cut(s) 176, 474
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 34
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 247, 425
BlsI GCNGC 2 cut(s) 248, 426
Bme1390I CCNGG 2 cut(s) 68, 215
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 32, 307
BmrFI CCNGG 2 cut(s) 68, 215
BpmI CTGGAG 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 2 cut(s) 305, 497
BpuMI CCSGG 2 cut(s) 68, 215
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 4 cut(s) 31, 83, 105, 355
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 2 cut(s) 48, 269
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 143, 479
BseNI ACTGG 1 cut(s) 59
BsePI GCGCGC 1 cut(s) 487
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 411
Bsh1236I CGCG 2 cut(s) 124, 489
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 30, 305
BsiHKAI GWGCWC 4 cut(s) 66, 130, 269, 318
BsiSI CCGG 5 cut(s) 28, 49, 68, 214, 270
BsmAI GTCTC 2 cut(s) 176, 474
BsmBI CGTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 4 cut(s) 66, 130, 269, 318
BspACI CCGC 3 cut(s) 97, 247, 422
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 142, 478
BspFNI CGCG 2 cut(s) 124, 489
BspHI TCATGA 1 cut(s) 551
BspLI GGNNCC 2 cut(s) 32, 307
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 2 cut(s) 30, 305
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 250
BssHII GCGCGC 1 cut(s) 487
BssNI GRCGYC 4 cut(s) 31, 83, 105, 355
Bst4CI ACNGT 2 cut(s) 170, 338
BstACI GRCGYC 4 cut(s) 31, 83, 105, 355
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 126, 489, 493
BstDEI CTNAG 2 cut(s) 129, 465
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 124, 489
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 5 cut(s) 33, 153, 183, 489, 491
BstMAI GTCTC 2 cut(s) 176, 474
BstMWI GCNNNNNNNGC 2 cut(s) 159, 252
BstSCI CCNGG 2 cut(s) 66, 213
BstSNI TACGTA 1 cut(s) 535
BstUI CGCG 2 cut(s) 124, 489
BstV1I GCAGC 1 cut(s) 411
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 126, 489, 493
CaiI CAGNNNCTG 1 cut(s) 159
CciI TCATGA 1 cut(s) 551
CfoI GCGC 5 cut(s) 33, 153, 183, 489, 491
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 4 cut(s) 72, 113, 130, 363
Csp6I GTAC 3 cut(s) 25, 532, 536
CviAII CATG 4 cut(s) 142, 175, 193, 552
CviJI RGCY 9 cut(s) 5, 45, 58, 64, 128, 267, 316, 410, 517
CviKI_1 RGCY 9 cut(s) 5, 45, 58, 64, 128, 267, 316, 410, 517
CviQI GTAC 3 cut(s) 25, 532, 536
DdeI CTNAG 2 cut(s) 129, 465
DinI GGCGCC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 4 cut(s) 64, 128, 267, 316
Eco105I TACGTA 1 cut(s) 535
Eco24I GRGCYC 4 cut(s) 66, 130, 269, 318
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 4 cut(s) 64, 128, 267, 316
EcoICRI GAGCTC 4 cut(s) 64, 128, 267, 316
EcoRV GATATC 1 cut(s) 286
EcoT38I GRGCYC 4 cut(s) 66, 130, 269, 318
EgeI GGCGCC 1 cut(s) 32
EheI GGCGCC 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 4 cut(s) 145, 178, 196, 555
FaiI YATR 8 cut(s) 143, 176, 194, 222, 327, 383, 528, 553
FatI CATG 4 cut(s) 141, 174, 192, 551
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 247, 425
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 4 cut(s) 66, 130, 269, 318
Fsp4HI GCNGC 2 cut(s) 247, 425
FspBI CTAG 1 cut(s) 473
GlaI GCGC 5 cut(s) 32, 152, 182, 488, 490
GluI GCNGC 2 cut(s) 247, 425
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 1 cut(s) 5
HapII CCGG 5 cut(s) 28, 49, 68, 214, 270
HgaI GACGC 4 cut(s) 72, 113, 130, 363
HhaI GCGC 5 cut(s) 33, 153, 183, 489, 491
Hin1I GRCGYC 4 cut(s) 31, 83, 105, 355
Hin1II CATG 4 cut(s) 145, 178, 196, 555
Hin6I GCGC 5 cut(s) 31, 151, 181, 487, 489
HinP1I GCGC 5 cut(s) 31, 151, 181, 487, 489
HinfI GANTC 1 cut(s) 156
HpaII CCGG 5 cut(s) 28, 49, 68, 214, 270
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 118, 473, 502, 552
Hpy99I CGWCG 3 cut(s) 88, 107, 206
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 170, 338
HpyCH4IV ACGT 2 cut(s) 23, 534
HpyCH4V TGCA 2 cut(s) 141, 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 252
HpyF3I CTNAG 2 cut(s) 129, 465
HpySE526I ACGT 2 cut(s) 23, 534
Hsp92I GRCGYC 4 cut(s) 31, 83, 105, 355
Hsp92II CATG 4 cut(s) 145, 178, 196, 555
HspAI GCGC 5 cut(s) 31, 151, 181, 487, 489
KasI GGCGCC 1 cut(s) 30
LmnI GCTCC 4 cut(s) 61, 69, 272, 321
Lsp1109I GCAGC 1 cut(s) 411
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 23, 534
MaeIII GTNAC 3 cut(s) 76, 374, 507
MhlI GDGCHC 4 cut(s) 66, 130, 269, 318
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 348
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 31
MnlI CCTC 7 cut(s) 64, 110, 329, 368, 385, 469, 507
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 5 cut(s) 28, 49, 68, 214, 270
MspR9I CCNGG 2 cut(s) 68, 215
MvnI CGCG 2 cut(s) 124, 489
MwoI GCNNNNNNNGC 2 cut(s) 159, 252
NarI GGCGCC 1 cut(s) 31
NciI CCSGG 2 cut(s) 68, 215
NlaIII CATG 4 cut(s) 145, 178, 196, 555
NlaIV GGNNCC 2 cut(s) 32, 307
NmuCI GTSAC 1 cut(s) 76
NspV TTCGAA 1 cut(s) 413
PagI TCATGA 1 cut(s) 551
PauI GCGCGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 1 cut(s) 156
PfoI TCCNGGA 2 cut(s) 66, 213
PkrI GCNGC 2 cut(s) 248, 426
PluTI GGCGCC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 535
Psp124BI GAGCTC 4 cut(s) 66, 130, 269, 318
PspN4I GGNNCC 2 cut(s) 32, 307
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 159
PteI GCGCGC 1 cut(s) 487
RsaI GTAC 3 cut(s) 26, 533, 537
RsaNI GTAC 3 cut(s) 25, 532, 536
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 4 cut(s) 66, 130, 269, 318
SatI GCNGC 2 cut(s) 247, 425
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 68, 215
SduI GDGCHC 4 cut(s) 66, 130, 269, 318
SfoI GGCGCC 1 cut(s) 32
SfuI TTCGAA 1 cut(s) 413
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 320, 512
SmoI CTYRAG 2 cut(s) 320, 512
SnaBI TACGTA 1 cut(s) 535
Sse9I AATT 1 cut(s) 348
SsiI CCGC 3 cut(s) 97, 247, 422
SspDI GGCGCC 1 cut(s) 30
SspMI CTAG 1 cut(s) 473
SstI GAGCTC 4 cut(s) 66, 130, 269, 318
StyD4I CCNGG 2 cut(s) 66, 213
TaaI ACNGT 2 cut(s) 170, 338
TaiI ACGT 2 cut(s) 26, 537
TaqI TCGA 7 cut(s) 86, 102, 189, 282, 294, 341, 413
TasI AATT 1 cut(s) 348
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 156
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 472
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.