Rmu_co8274851.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8274851.1
OG0000331
Physical Location & Seq
Forward (+)
187 .. 588
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8274851.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atggacaacaaaagcaaccagaaaaccctaggctcaaagcccaaaccctcgccgccgccgccgtccagatccacccccgtccgccaccgtaactggctcgaactcccgccggagatcaccgcttcgatactttcgcggctcggagcgatcgagatcctgacggccgccgagaaggtctgcagatcctggcgcgcaatctgcaaggacccactgatgtggcgcaccatcgatatgcgcaacgacggcgaccttcacgacatgacgtatgatttggagaagatgtgctgccacgccgttgatcggagctgtggtcagctcgtcgatatgaccgtcgagtacttcggcagcgatgagctgctcaagtatatcaccgataggtattcaactttttcattttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

133

Amino Acids

15.24

Weight (kDa)

6.81

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 236
AccII CGCG 2 cut(s) 136, 192
AciI CCGC 8 cut(s) 53, 56, 59, 82, 107, 120, 136, 165
AclWI GGATC 3 cut(s) 63, 148, 177
AcoI YGGCCR 1 cut(s) 162
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 1 cut(s) 384
AjnI CCWGG 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 3 cut(s) 306, 316, 355
AluI AGCT 3 cut(s) 306, 316, 355
AlwI GGATC 3 cut(s) 63, 148, 177
AlwNI CAGNNNCTG 1 cut(s) 186
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 285, 345, 355
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspA2I CCTAGG 1 cut(s) 28
AspLEI GCGC 4 cut(s) 192, 194, 222, 237
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 109, 361
AvaII GGWCC 1 cut(s) 205
AvrII CCTAGG 1 cut(s) 28
BbvI GCAGC 3 cut(s) 272, 342, 357
BccI CCATC 1 cut(s) 233
BceAI ACGGC 4 cut(s) 46, 177, 259, 278
BciT130I CCWGG 1 cut(s) 187
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 8 cut(s) 53, 56, 59, 137, 165, 286, 346, 356
BlnI CCTAGG 1 cut(s) 28
BlsI GCNGC 8 cut(s) 54, 57, 60, 138, 166, 287, 347, 357
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 266, 295, 296, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 98
BsePI GCGCGC 1 cut(s) 190
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 272, 342, 357
Bsh1236I CGCG 2 cut(s) 136, 192
Bsh1285I CGRYCG 2 cut(s) 150, 165
BshFI GGCC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 2 cut(s) 150, 165
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 300
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 6 cut(s) 68, 114, 147, 153, 182, 298
BspACI CCGC 8 cut(s) 53, 56, 59, 82, 107, 120, 136, 165
BspANI GGCC 1 cut(s) 164
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 2 cut(s) 136, 192
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 3 cut(s) 63, 148, 177
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 28
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 6 cut(s) 68, 114, 147, 153, 182, 298
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 89, 331
BstC8I GCNNGC 1 cut(s) 192
BstFNI CGCG 2 cut(s) 136, 192
BstHHI GCGC 4 cut(s) 192, 194, 222, 237
BstKTI GATC 6 cut(s) 71, 117, 150, 156, 185, 301
BstMBI GATC 6 cut(s) 68, 114, 147, 153, 182, 298
BstMCI CGRYCG 2 cut(s) 150, 165
BstMWI GCNNNNNNNGC 3 cut(s) 58, 198, 243
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 2 cut(s) 136, 192
BstV1I GCAGC 3 cut(s) 272, 342, 357
BstX2I RGATCY 3 cut(s) 68, 153, 182
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 3 cut(s) 68, 153, 182
BstZI CGGCCG 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 164
BsuTUI ATCGAT 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 186
CfoI GCGC 4 cut(s) 192, 194, 222, 237
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 259
CviJI RGCY 8 cut(s) 33, 40, 97, 139, 164, 306, 316, 355
CviKI_1 RGCY 8 cut(s) 33, 40, 97, 139, 164, 306, 316, 355
CviQI GTAC 1 cut(s) 337
DpnI GATC 6 cut(s) 70, 116, 149, 155, 184, 300
DpnII GATC 6 cut(s) 68, 114, 147, 153, 182, 298
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
EciI GGCGGA 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 205
Eco52I CGGCCG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 262
FaiI YATR 5 cut(s) 233, 260, 267, 326, 366
FatI CATG 1 cut(s) 258
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 8 cut(s) 53, 56, 59, 137, 165, 286, 346, 356
Fsp4HI GCNGC 8 cut(s) 53, 56, 59, 137, 165, 286, 346, 356
FspBI CTAG 1 cut(s) 29
FspI TGCGCA 1 cut(s) 236
GlaI GCGC 4 cut(s) 191, 193, 221, 236
GluI GCNGC 8 cut(s) 53, 56, 59, 137, 165, 286, 346, 356
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 110
HhaI GCGC 4 cut(s) 192, 194, 222, 237
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 4 cut(s) 190, 192, 220, 235
HinP1I GCGC 4 cut(s) 190, 192, 220, 235
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 109, 361
Hpy188I TCNGA 2 cut(s) 143, 303
Hpy188III TCNNGA 4 cut(s) 66, 151, 157, 254
Hpy99I CGWCG 3 cut(s) 245, 323, 335
HpyAV CCTTC 2 cut(s) 166, 260
HpyCH4III ACNGT 2 cut(s) 89, 331
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 180, 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 198, 243
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 4 cut(s) 190, 192, 220, 235
Kzo9I GATC 6 cut(s) 68, 114, 147, 153, 182, 298
LmnI GCTCC 2 cut(s) 143, 303
LpnPI CCDG 7 cut(s) 32, 79, 79, 123, 170, 172, 199
Lsp1109I GCAGC 3 cut(s) 272, 342, 357
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 89
MalI GATC 6 cut(s) 70, 116, 149, 155, 184, 300
MboI GATC 6 cut(s) 68, 114, 147, 153, 182, 298
MboII GAAGA 1 cut(s) 289
MflI RGATCY 3 cut(s) 68, 153, 182
MnlI CCTC 1 cut(s) 58
MseI TTAA 1 cut(s) 400
MslI CAYNNNNRTG 2 cut(s) 214, 230
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
MvnI CGCG 2 cut(s) 136, 192
MwoI GCNNNNNNNGC 3 cut(s) 58, 198, 243
NdeII GATC 6 cut(s) 68, 114, 147, 153, 182, 298
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 214
PauI GCGCGC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 327
PkrI GCNGC 8 cut(s) 54, 57, 60, 138, 166, 287, 347, 357
Ple19I CGATCG 1 cut(s) 150
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PstI CTGCAG 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 186
PsuI RGATCY 3 cut(s) 68, 153, 182
PteI GCGCGC 1 cut(s) 190
PvuI CGATCG 1 cut(s) 150
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 2 cut(s) 214, 230
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 8 cut(s) 53, 56, 59, 137, 165, 286, 346, 356
Sau3AI GATC 6 cut(s) 68, 114, 147, 153, 182, 298
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 187
SetI ASST 7 cut(s) 177, 252, 266, 308, 318, 357, 380
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 214, 230
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SsiI CCGC 8 cut(s) 53, 56, 59, 82, 107, 120, 136, 165
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 89, 331
TaiI ACGT 1 cut(s) 266
TaqI TCGA 6 cut(s) 99, 125, 150, 228, 321, 333
TatI WGTACW 1 cut(s) 336
TauI GCSGC 5 cut(s) 55, 58, 61, 139, 167
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TscAI CASTG 1 cut(s) 216
TseI GCWGC 3 cut(s) 285, 345, 355
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 28
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.