AT4G03625

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000331
Physical Location & Seq
Forward (+)
1608516 .. 1608710
195 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03625.1

Sequence Viewer

Length: 195 bp
ATGGATTCTTCCTCCTCTTCGCCTATGAAGTACGAGGACAAACCGAGAAACTGGGCGGAGCTTCTGCCGGAACTAACGGCGTCCATCCTCCACCGTCTTGGCGTGGTTGAGATACTTGAAAACGCTCAGAAAGTGTGCAGACCATGGCATCGCGTCTGCAAAGACCCTTCAATGTGGCGGAAAATCGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04710 map04710
Pfam Domains
Protein Families
F-box F-box-like LRR_4 LRR_6

Protein Analysis

64

Amino Acids

7.51

Weight (kDa)

7.82

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 63 1.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 56, 178
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 2 cut(s) 119, 171
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 56
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 153
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 1 cut(s) 68
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 2 cut(s) 56, 178
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 153
BstUI CGCG 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 186
BsuTUI ATCGAT 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 2 cut(s) 69, 142
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 144
CviJI RGCY 1 cut(s) 61
CviKI_1 RGCY 1 cut(s) 61
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 2 cut(s) 71, 193
Eco130I CCWWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 1 cut(s) 147
FaiI YATR 3 cut(s) 26, 145, 191
FatI CATG 1 cut(s) 143
FokI GGATG 1 cut(s) 71
HapII CCGG 1 cut(s) 68
HgaI GACGC 2 cut(s) 69, 142
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 147
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 138, 159
HpyF3I CTNAG 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 147
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 2 cut(s) 37, 81
LweI GCATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 9
MnlI CCTC 4 cut(s) 22, 25, 28, 98
MspI CCGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 143
NlaIII CATG 1 cut(s) 147
PfeI GAWTC 1 cut(s) 5
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SetI ASST 1 cut(s) 63
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 9 cut(s) 46, 57, 64, 80, 110, 115, 128, 156, 164
SsiI CCGC 2 cut(s) 56, 178
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 186
TfiI GAWTC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.