Rorug05G0025200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000331
Physical Location & Seq
Reverse (-)
1612227 .. 1613963
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0025200.1

Sequence Viewer

Length: 1062 bp
ATGTCACGGCAGTACTCTTCAGAATCTGAGTTTAAAGGGACCACAATAGTCGCCCTTTTCTACCAGGGGGGAGTCATACTTGGCGTTGACTCTAGGTCCTCAAATGAAGGGCAGTCTGAAAAACCACTTAAAATTATGGACGATAAGGATAAAATGTTTCCAATATCTTCCCATATAATTGCCATAATGACGGGGACGGTTGTTGATTGTATCAAGTTGTGCGAGTATGTGAAAAGGAAATGTTCACGCCAGTTCAAGAAGAAGGGTGAATCCGTTCCATATGCATTACAAATGGCTTGGACACATTTAGATGATCTATGTGAAAAGGAGAACAAATTATTTGGTGCCCTCATTGCCGGATGGGATACAGACAATGGTTTTCAAATTTATCGCATTTACATAAAAGACAGTAGAATTACGTCTGAACAGGTGTATTCTTCGTCTATGTTTACATCACTAGGATCTGGCTCTAAACACGCTAATACAATTTTGCACCAATTGTATAAGTCTCTATTGTTGGATGAAGATGAAGTTGTTGACGTGGCTTTAAAAGCTTTATTTAATGCAACGTTCTTTGATAAGTTCAGTGGTGGTGGTCTAAACATTTATAAGGTGCATGATAAAGAACCATGTAAAAAGATACGTAGCCTCAACGCGTTGGATGTTGAAAAACCCGTTGTCCGCTCACCATTGGACTCTAAACATTACAACCTCCACGAATATGAACCGAGAGTGCTTTTCTTGGTTTATTCTACTAGTTTCGGACGACCCATCTATGCATCTCAACTCATAGATCATTTCAGGGAATATGGTGGAAAGGCAATAGCGGCTCATCTTGTAGTGAAGAAGCAAGACTTTTACTTTCACCGAGTGGTGTGCGAGTCTAAAGAGGACGCTTTGCGAATATATCAATATGTGAGGAATTATCCTTACCAGCCCAGGGATACTTTCCTGCCTCTGGAAAGTTTTCCATACCGAGTTGTTTTGAAAACTGGAGTGCAGGTTTATGTGAATAAGAGCACGGAGGCTTTGTTGCAGGTCATTATTCGTGCGTCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

353

Amino Acids

40.41

Weight (kDa)

8.77

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 12 - 204 1.2e-25 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
Acc36I ACCTGC 2 cut(s) 991, 1027
AccB1I GGYRCC 1 cut(s) 344
AccBSI CCGCTC 1 cut(s) 684
AccII CGCG 1 cut(s) 656
AciI CCGC 2 cut(s) 682, 827
AclI AACGTT 1 cut(s) 569
AclWI GGATC 1 cut(s) 469
AcsI RAATTY 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 871
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 940, 958
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 4 cut(s) 256, 383, 668, 988
AhdI GACNNNNNGTC 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 755
AjiI CACGTC 1 cut(s) 541
AjnI CCWGG 2 cut(s) 63, 938
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 1022
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 26
ApoI RAATTY 1 cut(s) 384
Asp700I GAANNNNTTC 2 cut(s) 273, 966
AspS9I GGNCC 2 cut(s) 39, 96
AsuHPI GGTGA 3 cut(s) 278, 678, 857
AvaII GGWCC 2 cut(s) 39, 96
BaeGI GKGCMC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 1022
BccI CCATC 2 cut(s) 354, 779
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 2 cut(s) 65, 940
BciVI GTATCC 2 cut(s) 358, 937
BcoDI GTCTC 1 cut(s) 513
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 3 cut(s) 93, 458, 756
BfuAI ACCTGC 2 cut(s) 991, 1027
BfuI GTATCC 2 cut(s) 358, 937
BisI GCNGC 1 cut(s) 828
BlsI GCNGC 1 cut(s) 829
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 65, 940
Bme18I GGWCC 2 cut(s) 39, 96
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 39, 96
BmiI GGNNCC 2 cut(s) 40, 346
BmrFI CCNGG 2 cut(s) 65, 940
BmsI GCATC 1 cut(s) 788
BpmI CTGGAG 1 cut(s) 1014
BsaAI YACGTR 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 64, 938, 939
BsaXI ACNNNNNCTCC 4 cut(s) 987, 1016, 1017, 1046
Bsc4I CCNNNNNNNGG 2 cut(s) 940, 958
Bse1I ACTGG 2 cut(s) 250, 997
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 2 cut(s) 65, 940
BseDI CCNNGG 3 cut(s) 64, 938, 939
BseGI GGATG 3 cut(s) 365, 526, 667
BseLI CCNNNNNNNGG 2 cut(s) 940, 958
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 250, 997
BseSI GKGCMC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 656
BshNI GGYRCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 1022
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 2 cut(s) 52, 208
BslI CCNNNNNNNGG 2 cut(s) 940, 958
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 52, 208
Bsp1286I GDGCHC 2 cut(s) 349, 1022
Bsp143I GATC 3 cut(s) 313, 461, 793
BspACI CCGC 2 cut(s) 682, 827
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 40, 346
BspMI ACCTGC 2 cut(s) 991, 1027
BspPI GGATC 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 2 cut(s) 250, 997
BssECI CCNNGG 3 cut(s) 64, 938, 939
BssMI GATC 3 cut(s) 313, 461, 793
Bst2UI CCWGG 2 cut(s) 65, 940
Bst4CI ACNGT 2 cut(s) 199, 410
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 644
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 365, 526, 667
BstFNI CGCG 1 cut(s) 656
BstKTI GATC 3 cut(s) 316, 464, 796
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 3 cut(s) 313, 461, 793
BstMWI GCNNNNNNNGC 3 cut(s) 353, 551, 827
BstNI CCWGG 2 cut(s) 65, 940
BstSCI CCNGG 2 cut(s) 63, 938
BstSLI GKGCMC 1 cut(s) 349
BstSNI TACGTA 1 cut(s) 644
BstUI CGCG 1 cut(s) 656
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuI GTATCC 2 cut(s) 358, 937
BtrI CACGTC 1 cut(s) 541
BtsCI GGATG 3 cut(s) 365, 526, 667
BtsIMutI CAGTG 1 cut(s) 592
BveI ACCTGC 2 cut(s) 991, 1027
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 39, 96
CseI GACGC 2 cut(s) 902, 1041
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 617, 630
CviJI RGCY 8 cut(s) 296, 468, 545, 554, 648, 830, 937, 1028
CviKI_1 RGCY 8 cut(s) 296, 468, 545, 554, 648, 830, 937, 1028
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 27
DpnI GATC 3 cut(s) 315, 463, 795
DpnII GATC 3 cut(s) 313, 461, 793
DraI TTTAAA 2 cut(s) 34, 549
DraIII CACNNNGTG 1 cut(s) 871
DriI GACNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 22
Eco105I TACGTA 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 39, 96
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 63, 938
EcoT22I ATGCAT 2 cut(s) 286, 781
FaeI CATG 2 cut(s) 620, 633
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 2 cut(s) 52, 208
FatI CATG 2 cut(s) 616, 629
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 828
FokI GGATG 3 cut(s) 372, 533, 674
Fsp4HI GCNGC 1 cut(s) 828
FspBI CTAG 3 cut(s) 93, 458, 756
GluI GCNGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 1014
HapII CCGG 1 cut(s) 357
HgaI GACGC 2 cut(s) 902, 1041
Hin1II CATG 2 cut(s) 620, 633
HincII GTYRAC 2 cut(s) 88, 538
HindII GTYRAC 2 cut(s) 88, 538
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 6 cut(s) 23, 72, 89, 269, 695, 881
HpaII CCGG 1 cut(s) 357
HphI GGTGA 3 cut(s) 278, 678, 857
Hpy166II GTNNAC 4 cut(s) 88, 245, 450, 538
Hpy188I TCNGA 5 cut(s) 22, 28, 118, 424, 764
Hpy188III TCNNGA 2 cut(s) 256, 959
Hpy8I GTNNAC 4 cut(s) 88, 245, 450, 538
Hpy99I CGWCG 1 cut(s) 1057
HpyAV CCTTC 2 cut(s) 101, 256
HpyCH4III ACNGT 2 cut(s) 199, 410
HpyCH4IV ACGT 4 cut(s) 419, 540, 569, 643
HpyCH4V TGCA 7 cut(s) 284, 493, 566, 616, 779, 1000, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 551, 827
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 4 cut(s) 419, 540, 569, 643
Hsp92II CATG 2 cut(s) 620, 633
Kzo9I GATC 3 cut(s) 313, 461, 793
LweI GCATC 1 cut(s) 788
MaeI CTAG 3 cut(s) 93, 458, 756
MaeII ACGT 4 cut(s) 419, 540, 569, 643
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 315, 463, 795
MbiI CCGCTC 1 cut(s) 684
MboI GATC 3 cut(s) 313, 461, 793
MboII GAAGA 6 cut(s) 9, 159, 271, 429, 536, 856
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 2 cut(s) 349, 1022
MluCI AATT 9 cut(s) 132, 177, 335, 384, 414, 486, 497, 922, 1057
MluI ACGCGT 1 cut(s) 654
MlyI GAGTC 4 cut(s) 81, 83, 689, 890
MmeI TCCRAC 2 cut(s) 498, 639
MnlI CCTC 8 cut(s) 109, 359, 659, 722, 883, 912, 966, 1018
Mph1103I ATGCAT 2 cut(s) 286, 781
MroXI GAANNNNTTC 2 cut(s) 273, 966
MseI TTAA 4 cut(s) 33, 129, 548, 561
MslI CAYNNNNRTG 2 cut(s) 309, 720
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 65, 940
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 2 cut(s) 65, 940
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 3 cut(s) 353, 551, 827
NdeI CATATG 1 cut(s) 280
NdeII GATC 3 cut(s) 313, 461, 793
NlaIII CATG 2 cut(s) 620, 633
NlaIV GGNNCC 2 cut(s) 40, 346
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 2 cut(s) 286, 781
PasI CCCWGGG 1 cut(s) 939
PdmI GAANNNNTTC 2 cut(s) 273, 966
PfeI GAWTC 2 cut(s) 23, 269
PkrI GCNGC 1 cut(s) 829
PleI GAGTC 4 cut(s) 80, 83, 689, 889
PpsI GAGTC 4 cut(s) 80, 83, 689, 889
Ppu21I YACGTR 1 cut(s) 644
PpuMI RGGWCCY 1 cut(s) 96
PsiI TTATAA 1 cut(s) 609
Psp1406I AACGTT 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 63, 938
PspGI CCWGG 2 cut(s) 63, 938
PspN4I GGNNCC 2 cut(s) 40, 346
PspPI GGNCC 2 cut(s) 39, 96
PspPPI RGGWCCY 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 2 cut(s) 309, 720
SaqAI TTAA 4 cut(s) 33, 129, 548, 561
SatI GCNGC 1 cut(s) 828
Sau3AI GATC 3 cut(s) 313, 461, 793
Sau96I GGNCC 2 cut(s) 39, 96
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 4 cut(s) 81, 83, 689, 890
ScrFI CCNGG 2 cut(s) 65, 940
SduI GDGCHC 2 cut(s) 349, 1022
SfaNI GCATC 1 cut(s) 788
SinI GGWCC 2 cut(s) 39, 96
SmiMI CAYNNNNRTG 2 cut(s) 309, 720
SnaBI TACGTA 1 cut(s) 644
SpeI ACTAGT 1 cut(s) 755
Sse9I AATT 9 cut(s) 132, 177, 335, 384, 414, 486, 497, 922, 1057
SsiI CCGC 2 cut(s) 682, 827
SspMI CTAG 3 cut(s) 93, 458, 756
StyD4I CCNGG 2 cut(s) 63, 938
TaaI ACNGT 2 cut(s) 199, 410
TaiI ACGT 4 cut(s) 422, 543, 572, 646
TaqI TCGA 1 cut(s) 1055
TasI AATT 9 cut(s) 132, 177, 335, 384, 414, 486, 497, 922, 1057
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 2 cut(s) 23, 269
Tru1I TTAA 4 cut(s) 33, 129, 548, 561
Tru9I TTAA 4 cut(s) 33, 129, 548, 561
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 120, 537, 543, 738
TspGWI ACGGA 2 cut(s) 262, 1037
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 39, 96
XapI RAATTY 1 cut(s) 384
XmnI GAANNNNTTC 2 cut(s) 273, 966
XspI CTAG 3 cut(s) 93, 458, 756
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 2 cut(s) 286, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.