FvH4_3g09640

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000331
Physical Location & Seq
Forward (+)
5607004 .. 5608993
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09640.t1

Sequence Viewer

Length: 579 bp
ATGCGCAAATCCAGAAGAACCGCCCAGGGCGGCCGAAACTGGACGGAACTTCCAGACGACATAACGGCATCGATACTATCACGGCTAAAAACGGTCGAGATTCTCAGGACGGCTCAGAGGGTATGCATGACGTGGCGAAGAATCTGCAAAGAGAACTCTCTGGTTTGGCAATCTATCGACATCCTCGATGAACGTTATATTAACTTGAACTACGACATGGACAAGGTCTGCCGCCACGTCATTGATCTTAGCTCTGGTAATCTCGTCGATATCAGTATTGAGTACATCGGCACCGATCAACTCCTCAAGTACCTGGCTGAGAGACCACGGAAGAGTACTGTAAGCCCTAAAGAGCGTAGGCACAAGTTACGGTGGCTCACGTGGAGAGCTTTTACCATTTTCCAACCCAACAAAAGCCGAACGACGCCGTCTCGGGCAGAGCCGGAGCCATCATCACCGGAGAAGAAGAAGATTACTGGACCATCTCCGGGGCCCTTGGATTCTGGAGATTACGCTATTCTTACGCATACGCCCATCACTTCCTTTGTTGACTTGACCGGGATTCTCTTTAGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

193

Amino Acids

22.2

Weight (kDa)

9.77

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 14 - 61 3.1e-09 F-box-like
F-box PF00646 14 - 54 3.2e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 290
AciI CCGC 3 cut(s) 21, 30, 232
AclI AACGTT 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 31
AcvI CACGTG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 3 cut(s) 284, 311, 337
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 2 cut(s) 132, 238
AjnI CCWGG 2 cut(s) 24, 312
AluBI AGCT 2 cut(s) 252, 389
AluI AGCT 2 cut(s) 252, 389
Alw26I GTCTC 2 cut(s) 316, 435
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 2 cut(s) 31, 491
ApaI GGGCCC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 479, 491, 492
AsuC2I CCSGG 2 cut(s) 489, 559
AsuHPI GGTGA 1 cut(s) 447
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 495
BbrPI CACGTG 1 cut(s) 381
BccI CCATC 3 cut(s) 457, 490, 542
BceAI ACGGC 4 cut(s) 81, 98, 126, 412
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 2 cut(s) 26, 314
BcnI CCSGG 2 cut(s) 489, 559
BcoDI GTCTC 2 cut(s) 316, 435
BisI GCNGC 2 cut(s) 31, 232
BlsI GCNGC 2 cut(s) 32, 233
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 4 cut(s) 26, 314, 489, 559
Bme18I GGWCC 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 432
BmgBI CACGTC 2 cut(s) 132, 238
BmgT120I GGNCC 3 cut(s) 479, 491, 492
BmiI GGNNCC 4 cut(s) 292, 447, 492, 493
BmrFI CCNGG 4 cut(s) 26, 314, 489, 559
BmsI GCATC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 525
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 489, 559
Bsa29I ATCGAT 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 24, 25, 326, 488, 495
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 44, 481
BseBI CCWGG 2 cut(s) 26, 314
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 5 cut(s) 24, 25, 326, 488, 495
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 3 cut(s) 118, 128, 309
BseNI ACTGG 2 cut(s) 44, 481
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 495
BseX3I CGGCCG 1 cut(s) 31
Bsh1285I CGRYCG 2 cut(s) 34, 96
BshFI GGCC 2 cut(s) 33, 493
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 71
BsiEI CGRYCG 2 cut(s) 34, 96
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 4 cut(s) 443, 458, 488, 558
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 316, 435
BsmBI CGTCTC 1 cut(s) 435
BsnI GGCC 2 cut(s) 33, 493
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 432
Bsp120I GGGCCC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 3 cut(s) 244, 295, 573
BspACI CCGC 3 cut(s) 21, 30, 232
BspANI GGCC 2 cut(s) 33, 493
BspCNI CTCAG 3 cut(s) 117, 127, 310
BspDI ATCGAT 1 cut(s) 71
BspLI GGNNCC 4 cut(s) 292, 447, 492, 493
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 316
BsrI ACTGG 2 cut(s) 44, 481
BssECI CCNNGG 5 cut(s) 24, 25, 326, 488, 495
BssMI GATC 3 cut(s) 244, 295, 573
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 26, 314
Bst4CI ACNGT 3 cut(s) 94, 340, 372
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 381
BstDEI CTNAG 4 cut(s) 104, 114, 248, 318
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 247, 298, 576
BstMAI GTCTC 2 cut(s) 316, 435
BstMBI GATC 3 cut(s) 244, 295, 573
BstMCI CGRYCG 2 cut(s) 34, 96
BstNI CCWGG 2 cut(s) 26, 314
BstSCI CCNGG 4 cut(s) 24, 312, 487, 557
BstSLI GKGCMC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 573
BstYI RGATCY 1 cut(s) 573
BstZI CGGCCG 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 71
BsuRI GGCC 2 cut(s) 33, 493
BsuTUI ATCGAT 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 326
BtrI CACGTC 2 cut(s) 132, 238
BtsCI GGATG 1 cut(s) 180
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 479, 491, 492
ClaI ATCGAT 1 cut(s) 71
CseI GACGC 1 cut(s) 433
Csp6I GTAC 3 cut(s) 283, 310, 336
CviAII CATG 2 cut(s) 127, 217
CviQI GTAC 3 cut(s) 283, 310, 336
DdeI CTNAG 4 cut(s) 104, 114, 248, 318
DpnI GATC 3 cut(s) 246, 297, 575
DpnII GATC 3 cut(s) 244, 295, 573
EaeI YGGCCR 1 cut(s) 31
EagI CGGCCG 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 479
Eco52I CGGCCG 1 cut(s) 31
Eco72I CACGTG 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 432
EcoO109I RGGNCCY 2 cut(s) 491, 492
EcoRII CCWGG 2 cut(s) 24, 312
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 2 cut(s) 130, 220
FaiI YATR 6 cut(s) 62, 124, 128, 198, 218, 528
FatI CATG 2 cut(s) 126, 216
Fnu4HI GCNGC 2 cut(s) 31, 232
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 2 cut(s) 31, 232
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 31, 232
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 2 cut(s) 33, 493
HapII CCGG 4 cut(s) 443, 458, 488, 558
HgaI GACGC 1 cut(s) 433
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 2 cut(s) 130, 220
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 4 cut(s) 100, 141, 500, 562
HpaII CCGG 4 cut(s) 443, 458, 488, 558
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 2 cut(s) 117, 578
Hpy188III TCNNGA 5 cut(s) 12, 53, 97, 106, 504
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 2 cut(s) 269, 427
HpyCH4III ACNGT 3 cut(s) 94, 340, 372
HpyCH4IV ACGT 4 cut(s) 131, 193, 237, 380
HpyCH4V TGCA 2 cut(s) 126, 147
HpyF3I CTNAG 4 cut(s) 104, 114, 248, 318
HpySE526I ACGT 4 cut(s) 131, 193, 237, 380
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 2 cut(s) 130, 220
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 244, 295, 573
LmnI GCTCC 1 cut(s) 445
LweI GCATC 1 cut(s) 77
MaeII ACGT 4 cut(s) 131, 193, 237, 380
MaeIII GTNAC 1 cut(s) 366
MalI GATC 3 cut(s) 246, 297, 575
MboI GATC 3 cut(s) 244, 295, 573
MboII GAAGA 6 cut(s) 27, 150, 343, 475, 478, 481
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 3 cut(s) 111, 194, 314
Mph1103I ATGCAT 1 cut(s) 128
MseI TTAA 1 cut(s) 201
MspI CCGG 4 cut(s) 443, 458, 488, 558
MspR9I CCNGG 4 cut(s) 26, 314, 489, 559
MvaI CCWGG 2 cut(s) 26, 314
NciI CCSGG 2 cut(s) 489, 559
NdeII GATC 3 cut(s) 244, 295, 573
NlaIII CATG 2 cut(s) 130, 220
NlaIV GGNNCC 4 cut(s) 292, 447, 492, 493
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 128
PasI CCCWGGG 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 4 cut(s) 100, 141, 500, 562
PflFI GACNNNGTC 2 cut(s) 224, 427
PkrI GCNGC 2 cut(s) 32, 233
PmaCI CACGTG 1 cut(s) 381
PmlI CACGTG 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 381
Psp1406I AACGTT 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 24, 312
PspCI CACGTG 1 cut(s) 381
PspGI CCWGG 2 cut(s) 24, 312
PspN4I GGNNCC 4 cut(s) 292, 447, 492, 493
PspOMI GGGCCC 1 cut(s) 491
PspPI GGNCC 3 cut(s) 479, 491, 492
PsuI RGATCY 1 cut(s) 573
PsyI GACNNNGTC 2 cut(s) 224, 427
RsaI GTAC 3 cut(s) 284, 311, 337
RsaNI GTAC 3 cut(s) 283, 310, 336
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 31, 232
Sau3AI GATC 3 cut(s) 244, 295, 573
Sau96I GGNCC 3 cut(s) 479, 491, 492
ScaI AGTACT 1 cut(s) 337
ScrFI CCNGG 4 cut(s) 26, 314, 489, 559
SduI GDGCHC 1 cut(s) 495
SetI ASST 8 cut(s) 134, 196, 228, 240, 254, 315, 383, 391
SfaNI GCATC 1 cut(s) 77
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SsiI CCGC 3 cut(s) 21, 30, 232
StyD4I CCNGG 4 cut(s) 24, 312, 487, 557
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 3 cut(s) 94, 340, 372
TaiI ACGT 4 cut(s) 134, 196, 240, 383
TaqI TCGA 5 cut(s) 71, 96, 177, 186, 267
TatI WGTACW 2 cut(s) 282, 335
TauI GCSGC 2 cut(s) 33, 234
TfiI GAWTC 4 cut(s) 100, 141, 500, 562
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 2 cut(s) 59, 343
Tth111I GACNNNGTC 2 cut(s) 224, 427
VpaK11BI GGWCC 1 cut(s) 479
ZrmI AGTACT 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.