Rh2BG173200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000331
Physical Location & Seq
Reverse (-)
15205022 .. 15208292
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG173200.1

Sequence Viewer

Length: 894 bp
ATGGCCAAATCCTCCTACCAAACCTACCGGCGCCGAACTCGAAGCTACCGGAACTGGCTGGAGCTCCCGGACGACGTTACCGCTTCCATTCTCTCCCGCCTCGGCGCCATCGAAATCCTGACGCGAGCTCAGAAGGTCTGCATGCCGTGGCGCAAAATCTGCAAGGACCGTTTGATGTGGCGCACCATCGACATGAGAAACGACGGTTTTCTCCGCGATTACGACTTCGACTTGGACAAGATGTGCCGCCACGGCGTTGATCGGAGCTCCGGCGCTCTCGTCGACATCAATGTCGAACACTTCGGCACCGATGAGCTCCTCAAGTATATCACTAATAGTTCAAGTGGAATTAGACGCCTCCGTTTGGTCTGTTGTTATGGCATAACCGATGAGGGGTTGATTGAAGTGGCTTCGAAACTTCCGCTGCTGGAGCACCTTGAAATTTCTTTCAGCTTCGCCTCTGCTCAATCCTTGGAAGTGATTGGGCGCTCTTGCCCTCTTTTGAAATCACTCAAACTGAACAAATATGGGTACAGATACCCTTATGATGAGTGCGATGATGATGCACTTGCTATAGCATCCACAATGCATGATCTACACCACCTGCAGCTTTGCGGTAATAAGCTGACCAAAGATGGCTTGCAGAAAATCCTTGATTGTTGTCCAAATCTCGAGTCACTTGATCTGCGCAAGTGTTTCAATATCAATTTCGGGGTAGTTTCAAAAAGAAGATGCAGTAAACGAATTAAAAGTTTACGGCTTCCTGATGATTCCACCGATGACTATGAGTTTGATCGTGCAAATCGTAGGGAGTTATATGCTCAAACCCATTGCGACCCAGATTATGGTGACTTCCTCCTATTAGGACGTTCTGTTTTTGGTCGAGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

297

Amino Acids

34.42

Weight (kDa)

8.17

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 65 5.5e-09 F-box-like
F-box PF00646 19 - 61 1.9e-06 F-box domain
LRR_At5g56370 PF24758 184 - 257 2.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 612
AasI GACNNNNNNGTC 1 cut(s) 290
Acc16I TGCGCA 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 612
AccB1I GGYRCC 3 cut(s) 30, 104, 305
AccB7I CCANNNNNTGG 1 cut(s) 845
AccI GTMKAC 1 cut(s) 282
AccII CGCG 2 cut(s) 124, 216
AciI CCGC 6 cut(s) 81, 97, 214, 247, 422, 615
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 441
AcyI GRCGYC 3 cut(s) 31, 105, 355
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 3 cut(s) 364, 393, 845
AgsI TTSAA 6 cut(s) 342, 404, 440, 505, 700, 723
AluBI AGCT 8 cut(s) 45, 64, 128, 267, 316, 453, 610, 625
AluI AGCT 8 cut(s) 45, 64, 128, 267, 316, 453, 610, 625
Alw21I GWGCWC 5 cut(s) 66, 130, 269, 318, 435
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 424, 607
ApoI RAATTY 1 cut(s) 441
ArsI GACNNNNNNTTYG 4 cut(s) 659, 691, 773, 805
AspLEI GCGC 7 cut(s) 33, 107, 153, 183, 275, 489, 690
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 860
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 30, 104, 305
BanII GRGCYC 4 cut(s) 66, 130, 269, 318
Bbv12I GWGCWC 5 cut(s) 66, 130, 269, 318, 435
BbvI GCAGC 2 cut(s) 411, 619
BccI CCATC 3 cut(s) 116, 194, 629
BceAI ACGGC 3 cut(s) 130, 268, 773
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BcnI CCSGG 1 cut(s) 68
BfmI CTRYAG 2 cut(s) 573, 605
BfoI RGCGCY 4 cut(s) 34, 108, 276, 490
BfuAI ACCTGC 1 cut(s) 612
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 3 cut(s) 247, 425, 608
BlsI GCNGC 3 cut(s) 248, 426, 609
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 3 cut(s) 32, 106, 307
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 3 cut(s) 553, 587, 722
BpmI CTGGAG 2 cut(s) 80, 449
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 3 cut(s) 31, 105, 355
BsaJI CCNNGG 4 cut(s) 100, 146, 250, 471
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 393, 845
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 829
BseDI CCNNGG 4 cut(s) 100, 146, 250, 471
BseGI GGATG 1 cut(s) 578
BseLI CCNNNNNNNGG 3 cut(s) 364, 393, 845
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 411, 619
Bsh1236I CGCG 2 cut(s) 124, 216
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 3 cut(s) 30, 104, 305
BsiHKAI GWGCWC 5 cut(s) 66, 130, 269, 318, 435
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 4 cut(s) 28, 49, 68, 270
BslI CCNNNNNNNGG 3 cut(s) 364, 393, 845
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 5 cut(s) 66, 130, 269, 318, 435
Bsp143I GATC 4 cut(s) 259, 592, 682, 793
BspACI CCGC 6 cut(s) 81, 97, 214, 247, 422, 615
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 2 cut(s) 124, 216
BspLI GGNNCC 3 cut(s) 32, 106, 307
BspMAI CTGCAG 1 cut(s) 609
BspMI ACCTGC 1 cut(s) 612
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 3 cut(s) 30, 104, 305
BsrDI GCAATG 1 cut(s) 829
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 4 cut(s) 100, 146, 250, 471
BssMI GATC 4 cut(s) 259, 592, 682, 793
BssNI GRCGYC 3 cut(s) 31, 105, 355
BssT1I CCWWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 170, 206
BstACI GRCGYC 3 cut(s) 31, 105, 355
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 126, 143, 641
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 146, 250
BstF5I GGATG 1 cut(s) 578
BstFNI CGCG 2 cut(s) 124, 216
BstH2I RGCGCY 4 cut(s) 34, 108, 276, 490
BstHHI GCGC 7 cut(s) 33, 107, 153, 183, 275, 489, 690
BstKTI GATC 4 cut(s) 262, 595, 685, 796
BstMBI GATC 4 cut(s) 259, 592, 682, 793
BstMWI GCNNNNNNNGC 3 cut(s) 159, 252, 430
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 573, 605
BstUI CGCG 2 cut(s) 124, 216
BstV1I GCAGC 2 cut(s) 411, 619
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 146, 250
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 1 cut(s) 578
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 3 cut(s) 126, 143, 641
CfoI GCGC 7 cut(s) 33, 107, 153, 183, 275, 489, 690
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 2 cut(s) 130, 363
Csp6I GTAC 1 cut(s) 532
CviAII CATG 3 cut(s) 142, 193, 590
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 1 cut(s) 129
DinI GGCGCC 2 cut(s) 32, 106
DpnI GATC 4 cut(s) 261, 594, 684, 795
DpnII GATC 4 cut(s) 259, 592, 682, 793
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 4 cut(s) 64, 128, 267, 316
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 4 cut(s) 66, 130, 269, 318
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 4 cut(s) 64, 128, 267, 316
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 4 cut(s) 64, 128, 267, 316
EcoT14I CCWWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 4 cut(s) 66, 130, 269, 318
EgeI GGCGCC 2 cut(s) 32, 106
EheI GGCGCC 2 cut(s) 32, 106
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 3 cut(s) 145, 196, 593
FatI CATG 3 cut(s) 141, 192, 589
FauI CCCGC 1 cut(s) 104
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 247, 425, 608
FokI GGATG 1 cut(s) 565
FriOI GRGCYC 4 cut(s) 66, 130, 269, 318
Fsp4HI GCNGC 3 cut(s) 247, 425, 608
FspI TGCGCA 1 cut(s) 689
GlaI GCGC 7 cut(s) 32, 106, 152, 182, 274, 488, 689
GluI GCNGC 3 cut(s) 247, 425, 608
GsuI CTGGAG 2 cut(s) 80, 449
HaeII RGCGCY 4 cut(s) 34, 108, 276, 490
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 28, 49, 68, 270
HgaI GACGC 2 cut(s) 130, 363
HhaI GCGC 7 cut(s) 33, 107, 153, 183, 275, 489, 690
Hin1I GRCGYC 3 cut(s) 31, 105, 355
Hin1II CATG 3 cut(s) 145, 196, 593
Hin6I GCGC 7 cut(s) 31, 105, 151, 181, 273, 487, 688
HinP1I GCGC 7 cut(s) 31, 105, 151, 181, 273, 487, 688
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 674, 770
HpaII CCGG 4 cut(s) 28, 49, 68, 270
HphI GGTGA 1 cut(s) 860
Hpy166II GTNNAC 3 cut(s) 283, 740, 755
Hpy188I TCNGA 2 cut(s) 132, 264
Hpy188III TCNNGA 4 cut(s) 118, 671, 764, 884
Hpy8I GTNNAC 3 cut(s) 283, 740, 755
Hpy99I CGWCG 3 cut(s) 77, 206, 284
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 170, 206
HpyCH4IV ACGT 2 cut(s) 75, 868
HpyCH4V TGCA 8 cut(s) 141, 162, 566, 589, 607, 643, 735, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 252, 430
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 2 cut(s) 75, 868
Hsp92I GRCGYC 3 cut(s) 31, 105, 355
Hsp92II CATG 3 cut(s) 145, 196, 593
HspAI GCGC 7 cut(s) 31, 105, 151, 181, 273, 487, 688
KasI GGCGCC 2 cut(s) 30, 104
Kzo9I GATC 4 cut(s) 259, 592, 682, 793
LmnI GCTCC 6 cut(s) 61, 69, 264, 272, 321, 430
Lsp1109I GCAGC 2 cut(s) 411, 619
LweI GCATC 3 cut(s) 553, 587, 722
MaeII ACGT 2 cut(s) 75, 868
MaeIII GTNAC 3 cut(s) 76, 675, 848
MalI GATC 4 cut(s) 261, 594, 684, 795
MboI GATC 4 cut(s) 259, 592, 682, 793
MboII GAAGA 1 cut(s) 741
MhlI GDGCHC 5 cut(s) 66, 130, 269, 318, 435
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 348, 441, 706, 744
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 2 cut(s) 31, 105
MlyI GAGTC 1 cut(s) 683
MnlI CCTC 8 cut(s) 22, 110, 329, 368, 385, 469, 507, 866
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 591
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 747
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 4 cut(s) 28, 49, 68, 270
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 124, 216
MwoI GCNNNNNNNGC 3 cut(s) 159, 252, 430
NarI GGCGCC 2 cut(s) 31, 105
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 259, 592, 682, 793
NlaIII CATG 3 cut(s) 145, 196, 593
NlaIV GGNNCC 3 cut(s) 32, 106, 307
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 675, 848
NsbI TGCGCA 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 591
NspI RCATGY 1 cut(s) 145
NspV TTCGAA 1 cut(s) 413
PaeI GCATGC 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 671
PaqCI CACCTGC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 802
PfeI GAWTC 1 cut(s) 770
PflMI CCANNNNNTGG 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 3 cut(s) 248, 426, 609
PleI GAGTC 1 cut(s) 682
PluTI GGCGCC 2 cut(s) 34, 108
PpsI GAGTC 1 cut(s) 682
Psp124BI GAGCTC 4 cut(s) 66, 130, 269, 318
PspN4I GGNNCC 3 cut(s) 32, 106, 307
PspPI GGNCC 1 cut(s) 166
PstI CTGCAG 1 cut(s) 609
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 4 cut(s) 66, 130, 269, 318
SalI GTCGAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 3 cut(s) 247, 425, 608
Sau3AI GATC 4 cut(s) 259, 592, 682, 793
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 5 cut(s) 66, 130, 269, 318, 435
SfaNI GCATC 3 cut(s) 553, 587, 722
SfcI CTRYAG 2 cut(s) 573, 605
SfoI GGCGCC 2 cut(s) 32, 106
Sfr274I CTCGAG 1 cut(s) 671
SfuI TTCGAA 1 cut(s) 413
SinI GGWCC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 320, 671
SmoI CTYRAG 2 cut(s) 320, 671
SphI GCATGC 1 cut(s) 145
Sse9I AATT 4 cut(s) 348, 441, 706, 744
SsiI CCGC 6 cut(s) 81, 97, 214, 247, 422, 615
SspDI GGCGCC 2 cut(s) 30, 104
SstI GAGCTC 4 cut(s) 66, 130, 269, 318
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 170, 206
TaiI ACGT 2 cut(s) 78, 871
TaqI TCGA 9 cut(s) 40, 111, 189, 228, 282, 294, 413, 672, 883
TasI AATT 4 cut(s) 348, 441, 706, 744
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TseFI GTSAC 2 cut(s) 675, 848
TseI GCWGC 2 cut(s) 424, 607
Tsp45I GTSAC 2 cut(s) 675, 848
TspGWI ACGGA 1 cut(s) 350
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 441
XceI RCATGY 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.