RLG00000032190

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000331
Physical Location & Seq
Reverse (-)
11910450 .. 11912495
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032190

Sequence Viewer

Length: 654 bp
ATGGCCAAATCCTCCCGAAGACGCAAGAGAATCTGCCGAAACTGGACGGAGCTCCCTGAGAAAGCTACGGCGTCGATACTCTCACTGCTCGGAGCGATCGAGATCCTGGAGAGCGCTCAGAAAGTGTGCAGGAAATGGCGCAATAAACTCTGCAAGGACCCTTTTATGTGGAGCAAGATTGACGTGCGAAACGATGGTGAGATTAACTACGACTTGGAGGAGATGTGCCGCCACGCCGTTGATCAGAGCTCCGGTAAGCTTGTTGATATTAACATCGAGTATTTCGGCTCCGATGAGCTGCTCGAATACATCACTGAAAGCAAAGACAATGGTGATGCATTTGCGATAGCCAGATCAATGCATGGCTTACAGAACCTCCAGCTTTTTGGAAATTGGATGAATCATCAGGGATTGCACGCCATTCTTGTAGGTTGTCTGCATCTTGAGTCACTTGATCTCCGTCAATGTATACATCTTCATCTGAATAGTGAGGGATGGGAATGGGGTGCCATTCATGAAGGTTGTTCATCACATCTTGAAGATTTTAAAACAAGATGTTTTGAACAAATTACAAAACTGCGGCTCCCTGACGATTCTGTACATGATTATGAGCATCTTGCCATTGATAAAATTGAAAACAGAAGCATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

218

Amino Acids

25.09

Weight (kDa)

5.87

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 15 - 62 9.7e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 506
AccI GTMKAC 1 cut(s) 469
AciI CCGC 2 cut(s) 229, 580
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 600
AfeI AGCGCT 1 cut(s) 115
AgsI TTSAA 3 cut(s) 539, 563, 635
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 6 cut(s) 52, 65, 249, 259, 298, 382
AluI AGCT 6 cut(s) 52, 65, 249, 259, 298, 382
Alw21I GWGCWC 2 cut(s) 54, 251
AlwI GGATC 1 cut(s) 97
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 298
AspLEI GCGC 2 cut(s) 116, 141
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 209, 344
AvaII GGWCC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 2 cut(s) 54, 251
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 54, 251
BbvI GCAGC 1 cut(s) 285
BccI CCATC 2 cut(s) 188, 489
BceAI ACGGC 2 cut(s) 84, 221
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 3 cut(s) 229, 299, 581
BlsI GCNGC 3 cut(s) 230, 300, 582
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 157
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 4 cut(s) 159, 289, 508, 584
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 3 cut(s) 325, 448, 622
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 2 cut(s) 128, 362
BpuEI CTTGAG 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 8 cut(s) 209, 239, 360, 390, 441, 471, 567, 597
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 402, 500
BseJI GATNNNNATC 1 cut(s) 101
BseMII CTCAG 2 cut(s) 48, 131
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 54, 251
BsiSI CCGG 1 cut(s) 252
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 54, 251
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 5 cut(s) 96, 102, 241, 353, 454
BspACI CCGC 2 cut(s) 229, 580
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 49, 130
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 159, 289, 508, 584
BspPI GGATC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 1 cut(s) 47
BssMI GATC 5 cut(s) 96, 102, 241, 353, 454
BssNAI GTATAC 1 cut(s) 470
BssNI GRCGYC 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 470
Bst2UI CCWGG 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 71
BstAUI TGTACA 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 57, 117
BstF5I GGATG 2 cut(s) 402, 500
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 116, 141
BstKTI GATC 5 cut(s) 99, 105, 244, 356, 457
BstMBI GATC 5 cut(s) 96, 102, 241, 353, 454
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 386
BstYI RGATCY 1 cut(s) 102
BstZ17I GTATAC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 402, 500
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 83, 312
Cac8I GCNNGC 1 cut(s) 417
CciI TCATGA 1 cut(s) 514
CfoI GCGC 2 cut(s) 116, 141
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 2 cut(s) 30, 60
Csp6I GTAC 1 cut(s) 599
CviAII CATG 3 cut(s) 362, 515, 602
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 2 cut(s) 57, 117
DpnI GATC 5 cut(s) 98, 104, 243, 355, 456
DpnII GATC 5 cut(s) 96, 102, 241, 353, 454
DraI TTTAAA 1 cut(s) 547
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 2 cut(s) 52, 249
Eco24I GRGCYC 2 cut(s) 54, 251
Eco47I GGWCC 1 cut(s) 157
Eco47III AGCGCT 1 cut(s) 115
Eco53kI GAGCTC 2 cut(s) 52, 249
EcoICRI GAGCTC 2 cut(s) 52, 249
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 105
EcoT22I ATGCAT 2 cut(s) 340, 363
EcoT38I GRGCYC 2 cut(s) 54, 251
FaeI CATG 3 cut(s) 365, 518, 605
FaiI YATR 7 cut(s) 167, 363, 470, 516, 603, 609, 647
FalI AAGNNNNNCTT 1 cut(s) 634
FatI CATG 3 cut(s) 361, 514, 601
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 229, 299, 581
FokI GGATG 2 cut(s) 409, 507
FriOI GRGCYC 2 cut(s) 54, 251
Fsp4HI GCNGC 3 cut(s) 229, 299, 581
GlaI GCGC 2 cut(s) 115, 140
GluI GCNGC 3 cut(s) 229, 299, 581
GsuI CTGGAG 2 cut(s) 128, 362
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 252
HgaI GACGC 2 cut(s) 30, 60
HhaI GCGC 2 cut(s) 116, 141
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 3 cut(s) 365, 518, 605
Hin6I GCGC 2 cut(s) 114, 139
HinP1I GCGC 2 cut(s) 114, 139
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 4 cut(s) 30, 400, 446, 593
HpaII CCGG 1 cut(s) 252
HphI GGTGA 2 cut(s) 209, 344
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 5 cut(s) 92, 120, 246, 292, 483
Hpy188III TCNNGA 6 cut(s) 15, 100, 443, 515, 536, 651
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 512
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 6 cut(s) 129, 153, 338, 361, 415, 439
HpyF3I CTNAG 2 cut(s) 57, 117
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 3 cut(s) 365, 518, 605
HspAI GCGC 2 cut(s) 114, 139
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 96, 102, 241, 353, 454
LmnI GCTCC 7 cut(s) 49, 57, 92, 171, 254, 293, 588
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 3 cut(s) 325, 448, 622
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 447
MalI GATC 5 cut(s) 98, 104, 243, 355, 456
MboI GATC 5 cut(s) 96, 102, 241, 353, 454
MboII GAAGA 3 cut(s) 30, 467, 551
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 54, 251
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 391, 567, 630
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 4 cut(s) 22, 211, 386, 484
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 340, 363
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 204, 270, 546
MslI CAYNNNNRTG 1 cut(s) 606
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeII GATC 5 cut(s) 96, 102, 241, 353, 454
NlaIII CATG 3 cut(s) 365, 518, 605
NlaIV GGNNCC 4 cut(s) 159, 289, 508, 584
NmuCI GTSAC 1 cut(s) 447
NsiI ATGCAT 2 cut(s) 340, 363
PagI TCATGA 1 cut(s) 514
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 189
PfeI GAWTC 3 cut(s) 30, 400, 593
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 3 cut(s) 230, 300, 582
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 157
Psp124BI GAGCTC 2 cut(s) 54, 251
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 159, 289, 508, 584
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PsuI RGATCY 1 cut(s) 102
PvuI CGATCG 1 cut(s) 99
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 2 cut(s) 54, 251
SaqAI TTAA 3 cut(s) 204, 270, 546
SatI GCNGC 3 cut(s) 229, 299, 581
Sau3AI GATC 5 cut(s) 96, 102, 241, 353, 454
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 2 cut(s) 54, 251
SfaNI GCATC 3 cut(s) 325, 448, 622
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 3 cut(s) 391, 567, 630
SsiI CCGC 2 cut(s) 229, 580
SstI GAGCTC 2 cut(s) 54, 251
StyD4I CCNGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 186
TaqI TCGA 4 cut(s) 74, 99, 276, 303
TasI AATT 3 cut(s) 391, 567, 630
TatI WGTACW 1 cut(s) 598
TauI GCSGC 2 cut(s) 231, 583
TfiI GAWTC 3 cut(s) 30, 400, 593
Tru1I TTAA 3 cut(s) 204, 270, 546
Tru9I TTAA 3 cut(s) 204, 270, 546
TscAI CASTG 2 cut(s) 90, 319
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 5 cut(s) 413, 467, 503, 516, 531
TspGWI ACGGA 2 cut(s) 62, 449
TspRI CASTG 2 cut(s) 90, 319
VpaK11BI GGWCC 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 469
Zsp2I ATGCAT 2 cut(s) 340, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.