AT4G05497

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000331
Physical Location & Seq
Reverse (-)
2777723 .. 2778839
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05497.1

Sequence Viewer

Length: 741 bp
ATGTCTTCGTCGTCTTCTTCCCCTTTCCCTCAGGCTATGAAGAACGGAGAGTATAGAAACTGGGCGGAGCTACCGCCGGAACTGACGTCATCGATCCTGCTCCGACTCGGTGCGATTGAGATACTTCAAAACGCTCAGAGAGTGTGCAAATCGTGGCGACGCGTCTGTCAAGACCCATCGATGTGGCGTAAAATCGACATCAGAATCAAGGAAAACTTGGTAAACTCGGTAGAATTGTTTTACGTTATCGAGCCCCTGTGCTGTCGCGCCGTTGATCTCAGCCAGGGAGGCTTGCTTGAGATCAACATTGATTACTTGGTGAACACTTCGTTCCTCAATTACATTGCCGACAGATCAAGTAATCTGAGACGGCTTGGAGTTGTTGACTGTGCTCCAGTATTGAGCAGGGGAGTTGTCGAAGCAGCGATGAAGCTCCCATTGCTTGAAGAACTTGATATTACATACAAGTCATCAATCAGAGAACAAGAGTTAAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACATTAAAGCTAAACTGTACGGGTGATGTTAAGTGTTGTGATAAGGTTGCTCTAGCAATCGCTGAAACAATGCCCGGTCTTCGCCACCTCCAGCTTTTCAGGAACGGATTATCCGAGACGGGCTTGAACGCCATTCTTGAAGGTTGTCCTCACCTGAAAAACCTCGGGTTACACCAGTGTTTAAACATTAACATTGTAGGTGATATAGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like LRR_6

Protein Analysis

246

Amino Acids

27.44

Weight (kDa)

7.98

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 21 - 68 3e-12 F-box-like
F-box PF00646 21 - 64 1.1e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
AatII GACGTC 1 cut(s) 89
AccII CGCG 2 cut(s) 162, 267
AciI CCGC 2 cut(s) 65, 74
AclWI GGATC 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 544
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 4 cut(s) 128, 446, 652, 665
AjnI CCWGG 1 cut(s) 282
AloI GAACNNNNNNTCC 2 cut(s) 620, 652
AluBI AGCT 4 cut(s) 70, 433, 535, 619
AluI AGCT 4 cut(s) 70, 433, 535, 619
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 361, 635
AlwI GGATC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 689
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 4 cut(s) 331, 560, 668, 737
AvaI CYCGRG 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 30
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 6, 596
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 434
BccI CCATC 1 cut(s) 184
BceAI ACGGC 2 cut(s) 254, 386
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 2 cut(s) 361, 635
BfaI CTAG 1 cut(s) 578
BglI GCCNNNNNGGC 1 cut(s) 288
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 284, 600
BmeT110I CYCGRG 1 cut(s) 689
BmrFI CCNGG 2 cut(s) 284, 600
BmrI ACTGGG 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 70
BpiI GAAGAC 2 cut(s) 6, 596
BpmI CTGGAG 2 cut(s) 378, 599
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 600
Bsa29I ATCGAT 2 cut(s) 92, 179
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 283, 688
Bse1I ACTGG 4 cut(s) 65, 395, 505, 700
Bse21I CCTNAGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 342, 437
BseBI CCWGG 1 cut(s) 284
BseCI ATCGAT 2 cut(s) 92, 179
BseDI CCNNGG 2 cut(s) 283, 688
BseMI GCAATG 2 cut(s) 342, 437
BseMII CTCAG 5 cut(s) 44, 149, 292, 356, 512
BseNI ACTGG 4 cut(s) 65, 395, 505, 700
BseXI GCAGC 1 cut(s) 434
Bsh1236I CGCG 2 cut(s) 162, 267
BshFI GGCC 1 cut(s) 504
BshVI ATCGAT 2 cut(s) 92, 179
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 77, 600
BsmAI GTCTC 2 cut(s) 361, 635
BsmBI CGTCTC 2 cut(s) 361, 635
BsnI GGCC 1 cut(s) 504
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 255, 394
Bsp143I GATC 4 cut(s) 93, 274, 300, 353
BspACI CCGC 2 cut(s) 65, 74
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 5 cut(s) 43, 148, 291, 357, 513
BspDI ATCGAT 2 cut(s) 92, 179
BspFNI CGCG 2 cut(s) 162, 267
BspPI GGATC 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 342, 437
BsrI ACTGG 4 cut(s) 65, 395, 505, 700
BssECI CCNNGG 2 cut(s) 283, 688
BssMI GATC 4 cut(s) 93, 274, 300, 353
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 389, 542
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 5 cut(s) 30, 135, 278, 365, 521
BstFNI CGCG 2 cut(s) 162, 267
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 4 cut(s) 96, 277, 303, 356
BstMAI GTCTC 2 cut(s) 361, 635
BstMBI GATC 4 cut(s) 93, 274, 300, 353
BstMWI GCNNNNNNNGC 2 cut(s) 288, 439
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 282, 598
BstUI CGCG 2 cut(s) 162, 267
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 2 cut(s) 6, 596
BstXI CCANNNNNNTGG 1 cut(s) 183
Bsu15I ATCGAT 2 cut(s) 92, 179
Bsu36I CCTNAGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 504
BsuTUI ATCGAT 2 cut(s) 92, 179
BtgZI GCGATG 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 269
ClaI ATCGAT 2 cut(s) 92, 179
CseI GACGC 2 cut(s) 151, 168
Csp6I GTAC 1 cut(s) 543
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 5 cut(s) 30, 135, 278, 365, 521
DpnI GATC 4 cut(s) 95, 276, 302, 355
DpnII GATC 4 cut(s) 93, 274, 300, 353
DraI TTTAAA 1 cut(s) 708
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
EciI GGCGGA 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 255
Eco81I CCTNAGG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 255
Esp3I CGTCTC 2 cut(s) 361, 635
FaiI YATR 4 cut(s) 38, 54, 463, 731
FalI AAGNNNNNCTT 2 cut(s) 200, 232
Fnu4HI GCNGC 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 1 cut(s) 578
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 423
GsuI CTGGAG 2 cut(s) 378, 599
HaeIII GGCC 1 cut(s) 504
HapII CCGG 2 cut(s) 77, 600
HgaI GACGC 2 cut(s) 151, 168
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 2 cut(s) 105, 204
HpaII CCGG 2 cut(s) 77, 600
HphI GGTGA 4 cut(s) 331, 560, 668, 737
Hpy166II GTNNAC 3 cut(s) 223, 322, 385
Hpy188I TCNGA 7 cut(s) 104, 138, 203, 366, 479, 522, 640
Hpy188III TCNNGA 3 cut(s) 170, 625, 662
Hpy8I GTNNAC 3 cut(s) 223, 322, 385
Hpy99I CGWCG 2 cut(s) 13, 162
HpyAV CCTTC 1 cut(s) 659
HpyCH4III ACNGT 2 cut(s) 389, 542
HpyCH4IV ACGT 2 cut(s) 86, 243
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 439
HpyF3I CTNAG 5 cut(s) 30, 135, 278, 365, 521
HpySE526I ACGT 2 cut(s) 86, 243
Hsp92I GRCGYC 1 cut(s) 86
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 4 cut(s) 93, 274, 300, 353
LmnI GCTCC 4 cut(s) 67, 105, 397, 438
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 86, 243
MaeIII GTNAC 1 cut(s) 693
MalI GATC 4 cut(s) 95, 276, 302, 355
MboI GATC 4 cut(s) 93, 274, 300, 353
MboII GAAGA 5 cut(s) 6, 9, 52, 458, 596
MhlI GDGCHC 2 cut(s) 255, 394
MluCI AATT 2 cut(s) 233, 337
MluI ACGCGT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 7 cut(s) 39, 281, 344, 516, 623, 684, 698
MseI TTAA 5 cut(s) 491, 530, 555, 707, 714
MslI CAYNNNNRTG 1 cut(s) 181
MspI CCGG 2 cut(s) 77, 600
MspR9I CCNGG 2 cut(s) 284, 600
MssI GTTTAAAC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 2 cut(s) 162, 267
MwoI GCNNNNNNNGC 2 cut(s) 288, 439
NciI CCSGG 1 cut(s) 600
NdeII GATC 4 cut(s) 93, 274, 300, 353
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 99
PmeI GTTTAAAC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 5 cut(s) 491, 530, 555, 707, 714
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 4 cut(s) 93, 274, 300, 353
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 284, 600
SduI GDGCHC 2 cut(s) 255, 394
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 233, 337
SsiI CCGC 2 cut(s) 65, 74
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 282, 598
TaaI ACNGT 2 cut(s) 389, 542
TaiI ACGT 2 cut(s) 89, 246
TaqI TCGA 5 cut(s) 92, 179, 195, 249, 417
TasI AATT 2 cut(s) 233, 337
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 5 cut(s) 491, 530, 555, 707, 714
Tru9I TTAA 5 cut(s) 491, 530, 555, 707, 714
TscAI CASTG 1 cut(s) 707
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 53, 443
TspGWI ACGGA 2 cut(s) 60, 645
TspRI CASTG 1 cut(s) 707
XspI CTAG 1 cut(s) 578
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.