Rh2AG597000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000331
Physical Location & Seq
Reverse (-)
82707019 .. 82707748
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG597000.1

Sequence Viewer

Length: 621 bp
ATGGACCGAAACCAAGAACAAAACTGCCGGAACTGGATTGACCTTCCACACGACCTGACCGCTTCGATATTATCACGGCTGGGAGTGATCGAGATTCTGGAGACAGCTCAGAAGGTGTGCATGACGTGGCGCCGAATCTGCAAGGACCCGATGATGTGGCGCACCATCGACATGTGCGGTGTTTGGGTTTGGAGCAACTCCAAATCATGGAAGAAGAATGCACGGAAGATGGCAGCGATGTGCCGCCACGCCGTTGATCTTGGCCGTGGCAATGTCGTCGATATAAGTCTCCAAAACTTCGGCACCGATCTCCTCCTTGTGGATATCACTAACAGTTGCAAGGGAATCAGACGCCTCTGTCTGGTGTTACCTAATATAACACATGATGGACTCATTAGAGTGGCTTCCAAACTTCCGTTGTTGGAGGACCTTGAAATTTCTTACAGTGCATACACAACTGCAGGTCTTGAAGCCATCGGCAGTTGCTGCCCTCTTTTGAACTCACTGAAACTGAACAAGCGCCACGATATCCGATATGACTGGGACGGCCTTGTACTTGCTGGACTTCACCACCATTATCAGGTTTTCGGATACACGATGATAGCGATGCACTTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

206

Amino Acids

23.52

Weight (kDa)

8.58

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 57 1.5e-08 F-box-like
F-box PF00646 12 - 54 1.1e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 452
AccB1I GGYRCC 2 cut(s) 129, 302
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 3 cut(s) 60, 177, 244
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 1 cut(s) 435
AcyI GRCGYC 2 cut(s) 130, 352
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 4 cut(s) 207, 319, 361, 580
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 434, 470, 499
AjiI CACGTC 1 cut(s) 126
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 95, 293
AlwNI CAGNNNCTG 1 cut(s) 486
AoxI GGCC 2 cut(s) 262, 547
ApeKI GCWGC 2 cut(s) 233, 486
ApoI RAATTY 1 cut(s) 435
AspLEI GCGC 3 cut(s) 132, 162, 522
AspS9I GGNCC 3 cut(s) 4, 145, 427
AsuHPI GGTGA 1 cut(s) 560
AvaII GGWCC 3 cut(s) 4, 145, 427
BanI GGYRCC 2 cut(s) 129, 302
BbvI GCAGC 2 cut(s) 245, 473
BccI CCATC 4 cut(s) 173, 223, 380, 482
BceAI ACGGC 4 cut(s) 92, 236, 249, 562
BcgI CGANNNNNNTGC 3 cut(s) 259, 293, 595
BciVI GTATCC 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 95, 293
BfmI CTRYAG 2 cut(s) 459, 617
BfoI RGCGCY 2 cut(s) 133, 523
BfuAI ACCTGC 1 cut(s) 452
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 3 cut(s) 234, 244, 487
BlsI GCNGC 3 cut(s) 235, 245, 488
Bme18I GGWCC 3 cut(s) 4, 145, 427
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 4, 145, 427
BmiI GGNNCC 3 cut(s) 131, 147, 304
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 597
BmuI ACTGGG 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 119
BsaHI GRCGYC 2 cut(s) 130, 352
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 319, 361, 580
Bse1I ACTGG 2 cut(s) 38, 545
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 4 cut(s) 207, 319, 361, 580
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 38, 545
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 245, 473
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 264, 549
BshNI GGYRCC 2 cut(s) 129, 302
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 4 cut(s) 207, 319, 361, 580
BsmAI GTCTC 2 cut(s) 95, 293
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 264, 549
Bsp143I GATC 3 cut(s) 87, 256, 307
BspACI CCGC 3 cut(s) 60, 177, 244
BspANI GGCC 2 cut(s) 264, 549
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 131, 147, 304
BspMAI CTGCAG 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 452
BspT107I GGYRCC 2 cut(s) 129, 302
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 2 cut(s) 38, 545
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 3 cut(s) 87, 256, 307
BssNI GRCGYC 2 cut(s) 130, 352
Bst4CI ACNGT 2 cut(s) 335, 446
BstACI GRCGYC 2 cut(s) 130, 352
BstAPI GCANNNNNTGC 1 cut(s) 486
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 265
BstH2I RGCGCY 2 cut(s) 133, 523
BstHHI GCGC 3 cut(s) 132, 162, 522
BstKTI GATC 3 cut(s) 90, 259, 310
BstMAI GTCTC 2 cut(s) 95, 293
BstMBI GATC 3 cut(s) 87, 256, 307
BstMWI GCNNNNNNNGC 2 cut(s) 138, 486
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 459, 617
BstV1I GCAGC 2 cut(s) 245, 473
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 2 cut(s) 264, 549
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 251
BtrI CACGTC 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 451, 503
BveI ACCTGC 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 486
CfoI GCGC 3 cut(s) 132, 162, 522
Cfr13I GGNCC 3 cut(s) 4, 145, 427
CseI GACGC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 554
CviAII CATG 4 cut(s) 121, 172, 207, 383
CviJI RGCY 6 cut(s) 79, 107, 264, 404, 473, 549
CviKI_1 RGCY 6 cut(s) 79, 107, 264, 404, 473, 549
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 1 cut(s) 108
DinI GGCGCC 1 cut(s) 131
DpnI GATC 3 cut(s) 89, 258, 309
DpnII GATC 3 cut(s) 87, 256, 307
DrdI GACNNNNNNGTC 1 cut(s) 357
DseDI GACNNNNNNGTC 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 262
Eco32I GATATC 2 cut(s) 325, 529
Eco47I GGWCC 3 cut(s) 4, 145, 427
EcoO109I RGGNCCY 2 cut(s) 145, 427
EcoRV GATATC 2 cut(s) 325, 529
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
FaeI CATG 4 cut(s) 124, 175, 210, 386
FaiI YATR 9 cut(s) 122, 173, 208, 284, 377, 384, 451, 537, 619
FaqI GGGAC 1 cut(s) 557
FatI CATG 4 cut(s) 120, 171, 206, 382
Fnu4HI GCNGC 3 cut(s) 234, 244, 487
Fsp4HI GCNGC 3 cut(s) 234, 244, 487
GlaI GCGC 3 cut(s) 131, 161, 521
GluI GCNGC 3 cut(s) 234, 244, 487
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 2 cut(s) 133, 523
HaeIII GGCC 2 cut(s) 264, 549
HapII CCGG 1 cut(s) 28
HgaI GACGC 1 cut(s) 360
HhaI GCGC 3 cut(s) 132, 162, 522
Hin1I GRCGYC 2 cut(s) 130, 352
Hin1II CATG 4 cut(s) 124, 175, 210, 386
Hin6I GCGC 3 cut(s) 130, 160, 520
HinP1I GCGC 3 cut(s) 130, 160, 520
HinfI GANTC 4 cut(s) 94, 135, 345, 390
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 560
Hpy188I TCNGA 4 cut(s) 111, 350, 533, 590
Hpy188III TCNNGA 3 cut(s) 91, 98, 467
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 53, 106
HpyCH4III ACNGT 2 cut(s) 335, 446
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 7 cut(s) 120, 141, 221, 339, 449, 461, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 486
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 2 cut(s) 130, 352
Hsp92II CATG 4 cut(s) 124, 175, 210, 386
HspAI GCGC 3 cut(s) 130, 160, 520
KasI GGCGCC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 87, 256, 307
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 2 cut(s) 245, 473
LweI GCATC 1 cut(s) 597
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 366
MalI GATC 3 cut(s) 89, 258, 309
MboI GATC 3 cut(s) 87, 256, 307
MboII GAAGA 3 cut(s) 223, 226, 238
MluCI AATT 1 cut(s) 435
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 1 cut(s) 384
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 4 cut(s) 323, 365, 418, 501
MslI CAYNNNNRTG 2 cut(s) 170, 398
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 138, 486
NarI GGCGCC 1 cut(s) 130
NdeII GATC 3 cut(s) 87, 256, 307
NlaIII CATG 4 cut(s) 124, 175, 210, 386
NlaIV GGNNCC 3 cut(s) 131, 147, 304
NspI RCATGY 1 cut(s) 175
PciI ACATGT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 94, 135, 345
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 3 cut(s) 235, 245, 488
PleI GAGTC 1 cut(s) 384
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 384
PpuMI RGGWCCY 2 cut(s) 145, 427
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 2 cut(s) 145, 427
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 131, 147, 304
PspPI GGNCC 3 cut(s) 4, 145, 427
PspPPI RGGWCCY 2 cut(s) 145, 427
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 486
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 2 cut(s) 170, 398
SatI GCNGC 3 cut(s) 234, 244, 487
Sau3AI GATC 3 cut(s) 87, 256, 307
Sau96I GGNCC 3 cut(s) 4, 145, 427
SchI GAGTC 1 cut(s) 384
SetI ASST 9 cut(s) 45, 57, 109, 117, 128, 373, 432, 466, 585
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 2 cut(s) 459, 617
SfoI GGCGCC 1 cut(s) 131
SinI GGWCC 3 cut(s) 4, 145, 427
SmiMI CAYNNNNRTG 2 cut(s) 170, 398
Sse9I AATT 1 cut(s) 435
SsiI CCGC 3 cut(s) 60, 177, 244
SspDI GGCGCC 1 cut(s) 129
TaaI ACNGT 2 cut(s) 335, 446
TaiI ACGT 1 cut(s) 128
TaqI TCGA 4 cut(s) 65, 90, 168, 279
TaqII GACCGA 1 cut(s) 21
TasI AATT 1 cut(s) 435
TatI WGTACW 1 cut(s) 553
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 3 cut(s) 94, 135, 345
TscAI CASTG 2 cut(s) 451, 510
TseI GCWGC 2 cut(s) 233, 486
TspGWI ACGGA 2 cut(s) 238, 405
TspRI CASTG 2 cut(s) 451, 510
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 3 cut(s) 4, 145, 427
XapI RAATTY 1 cut(s) 435
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.