Rorug05G0026000

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
1676044 .. 1676986
943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0026000.1

Sequence Viewer

Length: 282 bp
ATGGCCACATGCAAGTTATTCGCATCCCATCGTGTAGCCCTCTGTAAATTGGGAGGTGATCGCCTCTACTTCCACCGCCTTGTGTTCGAGTCTGACGATGATGCAGAAAGGGCATATGAAACTACAACTCCTCATGGTCGAACTACTCCCTCGTACCTAGAACGGTTTCCAGATCAAGTGGTCTTGGATAATAAGAATCCAAGTGTTACAGTTTATGTGAATTGGAGCTCAAGGGATTTGCTGGAATTTGTACACGATGAATGTCAGTTATTATATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.86

Weight (kDa)

5.72

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 155, 252
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 230
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 68
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 230
BccI CCATC 1 cut(s) 36
BcgI CGANNNNNNTGC 1 cut(s) 35
BfaI CTAG 1 cut(s) 158
BmsI GCATC 2 cut(s) 32, 91
BpuEI CTTGAG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
BseGI GGATG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 230
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 2 cut(s) 58, 172
BspACI CCGC 1 cut(s) 76
BspANI GGCC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 250
BssMI GATC 2 cut(s) 58, 172
Bst4CI ACNGT 2 cut(s) 165, 211
BstAUI TGTACA 1 cut(s) 250
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 2 cut(s) 61, 175
BstMBI GATC 2 cut(s) 58, 172
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 12
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 23
Csp6I GTAC 2 cut(s) 154, 251
CviAII CATG 2 cut(s) 9, 134
CviJI RGCY 3 cut(s) 5, 38, 228
CviKI_1 RGCY 3 cut(s) 5, 38, 228
CviQI GTAC 2 cut(s) 154, 251
DpnI GATC 2 cut(s) 60, 174
DpnII GATC 2 cut(s) 58, 172
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 2 cut(s) 12, 137
FaiI YATR 7 cut(s) 10, 115, 117, 135, 216, 274, 276
FatI CATG 2 cut(s) 8, 133
FauNDI CATATG 1 cut(s) 115
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 230
FspBI CTAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 12, 137
HinfI GANTC 2 cut(s) 89, 196
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 165, 211
HpyCH4V TGCA 2 cut(s) 12, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
Hsp92II CATG 2 cut(s) 12, 137
Kzo9I GATC 2 cut(s) 58, 172
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 2 cut(s) 183, 227
LweI GCATC 2 cut(s) 32, 91
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 60, 174
MboI GATC 2 cut(s) 58, 172
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 47, 220, 245
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 5 cut(s) 47, 50, 74, 141, 160
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 165
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 58, 172
NlaIII CATG 2 cut(s) 12, 137
NspI RCATGY 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 196
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 230
RsaI GTAC 2 cut(s) 155, 252
RsaNI GTAC 2 cut(s) 154, 251
SacI GAGCTC 1 cut(s) 230
Sau3AI GATC 2 cut(s) 58, 172
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 230
SetI ASST 4 cut(s) 58, 159, 230, 281
SfaNI GCATC 2 cut(s) 32, 91
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 47, 220, 245
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 230
TaaI ACNGT 2 cut(s) 165, 211
TaqI TCGA 2 cut(s) 87, 139
TasI AATT 3 cut(s) 47, 220, 245
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 132, 273
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.