Rh5BG117100

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
11023460 .. 11023900
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG117100.1

Sequence Viewer

Length: 441 bp
ATGCTCAACAAACAGAACGTGAGGCTAAGTTTGACAACACTCGATGACTTGAGGGAAAGTTTGAGAACAAGTGATGAGGAAGCACTTGCTATGTCAAGAACAATGCAGGATTTACACCACCTCAAGCTTGTCGGAAATAGGCTGACTAATGATGGCTTGAGGAAAATTATTGATTCTTGTACTAATCTCGAGTCACTTGATTTGCGTTGCTGTTACCATCTTAATCTAGCAGAAGATTTGGGAAGATGTGCTGAACAAATTAAAAGCTTGCGGCTTCCCAACGATTCCGTTGACGACATGGACTATCTTTCTTCAACTACAGTTAATTGTCACATAGCACCTTATAAGGATGACTACTTAGATTTTGATGAGGAGGAGGATGACGACTCAGAGTTTGATGATGAGGAGGACTACATAGATATTAAGGCTCTGATCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

4.26

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AciI CCGC 1 cut(s) 271
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 1 cut(s) 315
AluBI AGCT 2 cut(s) 127, 267
AluI AGCT 2 cut(s) 127, 267
Ama87I CYCGRG 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AvaI CYCGRG 1 cut(s) 188
BccI CCATC 2 cut(s) 146, 225
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 188
BpuEI CTTGAG 3 cut(s) 70, 107, 178
BseGI GGATG 2 cut(s) 355, 385
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 3 cut(s) 386, 389, 419
BsiHKCI CYCGRG 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 1 cut(s) 432
BspACI CCGC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 401
BssMI GATC 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 3 cut(s) 26, 358, 388
BstF5I GGATG 2 cut(s) 355, 385
BstKTI GATC 1 cut(s) 435
BstMBI GATC 1 cut(s) 432
BstSFI CTRYAG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 355, 385
Cac8I GCNNGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 298
CviJI RGCY 7 cut(s) 25, 127, 142, 156, 267, 274, 428
CviKI_1 RGCY 7 cut(s) 25, 127, 142, 156, 267, 274, 428
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 3 cut(s) 26, 358, 388
DpnI GATC 1 cut(s) 434
DpnII GATC 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 188
FaeI CATG 1 cut(s) 301
FaiI YATR 5 cut(s) 92, 299, 335, 345, 416
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 362, 392
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 301
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 2 cut(s) 125, 265
HinfI GANTC 4 cut(s) 173, 191, 284, 386
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 134, 391, 432
Hpy188III TCNNGA 2 cut(s) 96, 188
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 3 cut(s) 26, 358, 388
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 1 cut(s) 432
LpnPI CCDG 1 cut(s) 92
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 192, 212, 329
MalI GATC 1 cut(s) 434
MboI GATC 1 cut(s) 432
MboII GAAGA 3 cut(s) 245, 255, 303
MluCI AATT 3 cut(s) 165, 258, 325
MlyI GAGTC 2 cut(s) 200, 380
MmeI TCCRAC 1 cut(s) 112
MseI TTAA 4 cut(s) 222, 261, 324, 423
NdeII GATC 1 cut(s) 432
NlaIII CATG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 192, 329
PaeR7I CTCGAG 1 cut(s) 188
PfeI GAWTC 2 cut(s) 173, 284
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 199, 380
PpsI GAGTC 2 cut(s) 199, 380
PsiI TTATAA 1 cut(s) 345
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 4 cut(s) 222, 261, 324, 423
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 432
SchI GAGTC 2 cut(s) 200, 380
SetI ASST 5 cut(s) 21, 123, 129, 269, 343
SfcI CTRYAG 1 cut(s) 318
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 4 cut(s) 49, 122, 157, 188
SmoI CTYRAG 4 cut(s) 49, 122, 157, 188
Sse9I AATT 3 cut(s) 165, 258, 325
SsiI CCGC 1 cut(s) 271
SspMI CTAG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 42, 189, 435
TasI AATT 3 cut(s) 165, 258, 325
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 2 cut(s) 173, 284
Tru1I TTAA 4 cut(s) 222, 261, 324, 423
Tru9I TTAA 4 cut(s) 222, 261, 324, 423
TseFI GTSAC 2 cut(s) 192, 329
Tsp45I GTSAC 2 cut(s) 192, 329
TspGWI ACGGA 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.