FvH4_3g09562

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000331
Physical Location & Seq
Forward (+)
5576569 .. 5577342
774 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09562.t1

Sequence Viewer

Length: 309 bp
ATGGCCAAATCCTCGGAAGGACGAAAGAGAATCTGCCGAAACTGGAAGGATCTCCCTGAAAATGCCACTGCTTCGATACTCTCACGGCTCGGAGCGATCGAGATCATTGAGAGCGCACAGAAGATGTGCCGCCACGCCGTGGATCGGAGCTCCGGTAATCTGGTCTATGTTAACATCGAGTACTTCGGCACCGATGACCTGCTTGAGTATATCACTGATAGTTCGCGTGGAATCGGACGTCTGCGCTTATTGTGTTGTGATGACATCTCAGATGGGGGATTGATTAAAGTAGCTTCAAAACTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

103

Amino Acids

11.31

Weight (kDa)

7.65

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 241
Acc36I ACCTGC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 1 cut(s) 226
AciI CCGC 1 cut(s) 130
AclWI GGATC 2 cut(s) 57, 150
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 139, 144
AgsI TTSAA 1 cut(s) 297
AluBI AGCT 2 cut(s) 150, 293
AluI AGCT 2 cut(s) 150, 293
Alw21I GWGCWC 1 cut(s) 152
AlwI GGATC 2 cut(s) 57, 150
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 2 cut(s) 116, 246
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BccI CCATC 1 cut(s) 266
BceAI ACGGC 2 cut(s) 101, 122
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmcAI AGTACT 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 12, 138
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 144
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 12, 138
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 139, 144
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 139, 144
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 4 cut(s) 49, 96, 102, 142
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 281
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 57, 150
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 12, 138
BssMI GATC 4 cut(s) 49, 96, 102, 142
BssNI GRCGYC 1 cut(s) 238
BstACI GRCGYC 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 268
BstDSI CCRYGG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 226
BstHHI GCGC 2 cut(s) 116, 246
BstKTI GATC 4 cut(s) 52, 99, 105, 145
BstMBI GATC 4 cut(s) 49, 96, 102, 142
BstMCI CGRYCG 1 cut(s) 99
BstUI CGCG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 213
BveI ACCTGC 1 cut(s) 207
CfoI GCGC 2 cut(s) 116, 246
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 4 cut(s) 5, 88, 150, 293
CviKI_1 RGCY 4 cut(s) 5, 88, 150, 293
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 268
DpnI GATC 4 cut(s) 51, 98, 104, 144
DpnII GATC 4 cut(s) 49, 96, 102, 142
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 152
FaiI YATR 2 cut(s) 168, 210
Fnu4HI GCNGC 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 130
GlaI GCGC 2 cut(s) 115, 245
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 153
HhaI GCGC 2 cut(s) 116, 246
Hin1I GRCGYC 1 cut(s) 238
Hin6I GCGC 2 cut(s) 114, 244
HinP1I GCGC 2 cut(s) 114, 244
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 30, 231
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 5 cut(s) 16, 92, 147, 236, 271
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 11, 40
HpyCH4IV ACGT 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 238
HspAI GCGC 2 cut(s) 114, 244
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 49, 96, 102, 142
LmnI GCTCC 3 cut(s) 92, 147, 155
LpnPI CCDG 5 cut(s) 28, 69, 146, 166, 212
MaeII ACGT 1 cut(s) 238
MalI GATC 4 cut(s) 51, 98, 104, 144
MboI GATC 4 cut(s) 49, 96, 102, 142
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 152
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 22
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 171, 285
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 226
NdeII GATC 4 cut(s) 49, 96, 102, 142
NlaIV GGNNCC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 2 cut(s) 30, 231
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 131
Ple19I CGATCG 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 49
PvuI CGATCG 1 cut(s) 99
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 171, 285
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 4 cut(s) 49, 96, 102, 142
ScaI AGTACT 1 cut(s) 182
SduI GDGCHC 1 cut(s) 152
SetI ASST 4 cut(s) 152, 201, 241, 295
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 1 cut(s) 130
SstI GAGCTC 1 cut(s) 152
TaiI ACGT 1 cut(s) 241
TaqI TCGA 3 cut(s) 74, 99, 177
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 30, 231
Tru1I TTAA 2 cut(s) 171, 285
Tru9I TTAA 2 cut(s) 171, 285
TscAI CASTG 2 cut(s) 73, 220
TspRI CASTG 2 cut(s) 73, 220
Van91I CCANNNNNTGG 1 cut(s) 139
ZraI GACGTC 1 cut(s) 239
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.