Rh5BG118200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000331
Physical Location & Seq
Forward (+)
11143051 .. 11143329
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG118200.1

Sequence Viewer

Length: 279 bp
ATGGCGCAAAGTCTGCAACTCTGCAAGGACCCTCTCATCTGGCGCAAGATTGACATGCGCAACGATGGCGATCTCGAAGACATAGACTACGACTTGGAGGAGATGTGCCGCCACGCCGTTAATCGGAGCTCTGGTAATCTGGTCGATATTAACATTGAGTACTTCGGCACCGATGAGCTGCTTGAGTATATCACTGATAGAGTGATAGGTATGAACTTGTTTGTGTTGGATGTTTTGATCTGTTTAGAATTTCTTGGTGAGTTTGATTGGATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

92

Amino Acids

10.86

Weight (kDa)

4.05

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 123
AluBI AGCT 2 cut(s) 129, 178
AluI AGCT 2 cut(s) 129, 178
Alw21I GWGCWC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 3 cut(s) 7, 45, 60
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 109, 179
BlsI GCNGC 2 cut(s) 110, 180
BmcAI AGTACT 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 30, 169
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 69
BsaXI ACNNNNNCTCC 4 cut(s) 89, 118, 119, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 69
BseGI GGATG 2 cut(s) 235, 276
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 70, 237
BspACI CCGC 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 30, 169
BspT107I GGYRCC 1 cut(s) 167
BssMI GATC 2 cut(s) 70, 237
BstAPI GCANNNNNTGC 1 cut(s) 13
BstF5I GGATG 2 cut(s) 235, 276
BstHHI GCGC 3 cut(s) 7, 45, 60
BstKTI GATC 2 cut(s) 73, 240
BstMBI GATC 2 cut(s) 70, 237
BstMWI GCNNNNNNNGC 2 cut(s) 13, 66
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 84
BtsCI GGATG 2 cut(s) 235, 276
BtsIMutI CAGTG 1 cut(s) 192
CfoI GCGC 3 cut(s) 7, 45, 60
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 55
CviJI RGCY 2 cut(s) 129, 178
CviKI_1 RGCY 2 cut(s) 129, 178
CviQI GTAC 1 cut(s) 160
DpnI GATC 2 cut(s) 72, 239
DpnII GATC 2 cut(s) 70, 237
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 83, 189, 212
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 109, 179
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 109, 179
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 3 cut(s) 6, 44, 59
GluI GCNGC 2 cut(s) 109, 179
HhaI GCGC 3 cut(s) 7, 45, 60
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 3 cut(s) 5, 43, 58
HinP1I GCGC 3 cut(s) 5, 43, 58
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 16, 24
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 66
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 3 cut(s) 5, 43, 58
Kzo9I GATC 2 cut(s) 70, 237
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 3 cut(s) 25, 117, 125
Lsp1109I GCAGC 1 cut(s) 165
MalI GATC 2 cut(s) 72, 239
MboI GATC 2 cut(s) 70, 237
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 2 cut(s) 42, 91
MseI TTAA 3 cut(s) 120, 150, 277
MwoI GCNNNNNNNGC 2 cut(s) 13, 66
NdeII GATC 2 cut(s) 70, 237
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 30, 169
NsbI TGCGCA 1 cut(s) 59
NspI RCATGY 1 cut(s) 58
PkrI GCNGC 2 cut(s) 110, 180
PpuMI RGGWCCY 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 30, 169
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 120, 150, 277
SatI GCNGC 2 cut(s) 109, 179
Sau3AI GATC 2 cut(s) 70, 237
Sau96I GGNCC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 161
SduI GDGCHC 1 cut(s) 131
SetI ASST 3 cut(s) 131, 180, 211
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 248
SsiI CCGC 1 cut(s) 109
SstI GAGCTC 1 cut(s) 131
TaqI TCGA 2 cut(s) 75, 144
TasI AATT 1 cut(s) 248
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 3 cut(s) 120, 150, 277
Tru9I TTAA 3 cut(s) 120, 150, 277
TscAI CASTG 1 cut(s) 199
TseI GCWGC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.