Rh5AG119300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000331
Physical Location & Seq
Forward (+)
11089796 .. 11091515
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG119300.1

Sequence Viewer

Length: 453 bp
ATGTCCTCACCTTCATCTCCAAAACGACCATGCGGAGCCCCGATCCGAAACTGGACGGAGCTCCCGGAGGACGTCACGGCGGCGATCCTCTCCCGTCTCGGAGCCATCGACATCCTCGAGACGGCTCAGAAGGTCTGCAAGACGTGGTACAGAGTCTGCAAGGACCCTCTCATGTGGCGCACCGTCGACTTCCGCGACGATGATCTCCACAAAGTTCATGACTTGGGGAAGATGTGCCGCTACGCCGTTGATCGGAGCGATGGGAAATTGGCCAGTATCAATCTCGATTCCTTCGCCACCGATGAGCTCCTCAAGTACATCACTGATAGCGCACACACAAATACAGACCTCACAAATGTGTTTTCTCTGATGATGCAGATGGTGAAGTCTTCCCCTGGAATGGTTTCGTTGAGTTTGAGGATTTCTATTACTTTTTATGAAACTGGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

6.27

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 18 - 65 1.8e-11 F-box-like
F-box PF00646 18 - 60 1.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 195
AciI CCGC 4 cut(s) 33, 80, 193, 238
AclWI GGATC 2 cut(s) 37, 79
AcoI YGGCCR 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 149, 317
AfiI CCNNNNNNNGG 3 cut(s) 121, 252, 400
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 394
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 2 cut(s) 61, 307
AluI AGCT 2 cut(s) 61, 307
Alw21I GWGCWC 2 cut(s) 63, 309
Alw26I GTCTC 2 cut(s) 101, 113
AlwI GGATC 2 cut(s) 37, 79
AlwNI CAGNNNCTG 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 403
AspLEI GCGC 2 cut(s) 180, 332
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 272
BanII GRGCYC 3 cut(s) 40, 63, 309
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 63, 309
BccI CCATC 3 cut(s) 113, 254, 373
BceAI ACGGC 3 cut(s) 93, 138, 230
BciT130I CCWGG 1 cut(s) 396
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 101, 113
BfaI CTAG 1 cut(s) 451
BisI GCNGC 2 cut(s) 81, 238
BlsI GCNGC 2 cut(s) 82, 239
Bme1390I CCNGG 2 cut(s) 65, 396
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 37, 103, 165
BmrFI CCNGG 2 cut(s) 65, 396
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 252, 400
Bse1I ACTGG 3 cut(s) 56, 273, 448
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 121, 252, 400
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 3 cut(s) 56, 273, 448
BseRI GAGGAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 63, 309
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 121, 252, 400
BsmAI GTCTC 2 cut(s) 101, 113
BsmBI CGTCTC 2 cut(s) 101, 113
BsnI GGCC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 3 cut(s) 40, 63, 309
Bsp143I GATC 5 cut(s) 42, 84, 202, 250, 447
BspACI CCGC 4 cut(s) 33, 80, 193, 238
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 37, 103, 165
BspPI GGATC 2 cut(s) 37, 79
BsrI ACTGG 3 cut(s) 56, 273, 448
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 5 cut(s) 42, 84, 202, 250, 447
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 2 cut(s) 180, 332
BstKTI GATC 5 cut(s) 45, 87, 205, 253, 450
BstMAI GTCTC 2 cut(s) 101, 113
BstMBI GATC 5 cut(s) 42, 84, 202, 250, 447
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 63, 394
BstUI CGCG 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuRI GGCC 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 156
CciI TCATGA 1 cut(s) 217
CfoI GCGC 2 cut(s) 180, 332
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 148, 316
CviAII CATG 3 cut(s) 30, 172, 218
CviJI RGCY 6 cut(s) 38, 61, 104, 125, 272, 307
CviKI_1 RGCY 6 cut(s) 38, 61, 104, 125, 272, 307
CviQI GTAC 2 cut(s) 148, 316
DdeI CTNAG 1 cut(s) 126
DpnI GATC 5 cut(s) 44, 86, 204, 252, 449
DpnII GATC 5 cut(s) 42, 84, 202, 250, 447
EaeI YGGCCR 1 cut(s) 270
Ecl136II GAGCTC 2 cut(s) 61, 307
Eco24I GRGCYC 3 cut(s) 40, 63, 309
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 2 cut(s) 61, 307
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 2 cut(s) 61, 307
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 394
EcoT38I GRGCYC 3 cut(s) 40, 63, 309
Esp3I CGTCTC 2 cut(s) 101, 113
FaeI CATG 3 cut(s) 33, 175, 221
FaiI YATR 4 cut(s) 31, 173, 219, 438
FatI CATG 3 cut(s) 29, 171, 217
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 81, 238
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 3 cut(s) 40, 63, 309
Fsp4HI GCNGC 2 cut(s) 81, 238
FspBI CTAG 1 cut(s) 451
GlaI GCGC 2 cut(s) 179, 331
GluI GCNGC 2 cut(s) 81, 238
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 65
HhaI GCGC 2 cut(s) 180, 332
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 33, 175, 221
Hin6I GCGC 2 cut(s) 178, 330
HinP1I GCGC 2 cut(s) 178, 330
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 153, 287
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 5 cut(s) 47, 101, 129, 255, 369
Hpy188III TCNNGA 3 cut(s) 118, 218, 284
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 2 cut(s) 188, 200
HpyAV CCTTC 3 cut(s) 21, 124, 301
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 2 cut(s) 72, 143
HpyCH4V TGCA 3 cut(s) 138, 159, 376
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 72, 143
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 33, 175, 221
HspAI GCGC 2 cut(s) 178, 330
Kzo9I GATC 5 cut(s) 42, 84, 202, 250, 447
LmnI GCTCC 6 cut(s) 35, 58, 66, 101, 255, 312
LpnPI CCDG 6 cut(s) 37, 78, 286, 381, 408, 429
LweI GCATC 1 cut(s) 363
MaeI CTAG 1 cut(s) 451
MaeII ACGT 2 cut(s) 72, 143
MaeIII GTNAC 1 cut(s) 73
MalI GATC 5 cut(s) 44, 86, 204, 252, 449
MboI GATC 5 cut(s) 42, 84, 202, 250, 447
MboII GAAGA 2 cut(s) 241, 381
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 3 cut(s) 40, 63, 309
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 8 cut(s) 16, 61, 98, 125, 177, 320, 359, 411
Mox20I TGGCCA 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 403
MscI TGGCCA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 1 cut(s) 195
NciI CCSGG 1 cut(s) 65
NdeII GATC 5 cut(s) 42, 84, 202, 250, 447
NlaIII CATG 3 cut(s) 33, 175, 221
NlaIV GGNNCC 3 cut(s) 37, 103, 165
NmuCI GTSAC 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 356
PaeR7I CTCGAG 1 cut(s) 116
PagI TCATGA 1 cut(s) 217
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 114, 192
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 2 cut(s) 82, 239
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 163
Psp124BI GAGCTC 2 cut(s) 63, 309
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 3 cut(s) 37, 103, 165
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 447
RsaI GTAC 2 cut(s) 149, 317
RsaNI GTAC 2 cut(s) 148, 316
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 2 cut(s) 63, 309
SalI GTCGAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 81, 238
Sau3AI GATC 5 cut(s) 42, 84, 202, 250, 447
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 65, 396
SduI GDGCHC 3 cut(s) 40, 63, 309
SetI ASST 7 cut(s) 13, 63, 75, 135, 146, 309, 351
SfaNI GCATC 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 116, 311
SmoI CTYRAG 2 cut(s) 116, 311
Sse9I AATT 1 cut(s) 266
SsiI CCGC 4 cut(s) 33, 80, 193, 238
SspMI CTAG 1 cut(s) 451
SstI GAGCTC 2 cut(s) 63, 309
StyD4I CCNGG 2 cut(s) 63, 394
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 2 cut(s) 75, 146
TaqI TCGA 4 cut(s) 108, 117, 186, 285
TasI AATT 1 cut(s) 266
TatI WGTACW 1 cut(s) 315
TauI GCSGC 2 cut(s) 83, 240
TfiI GAWTC 1 cut(s) 287
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 206, 453
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 1 cut(s) 451
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.