Rmu_sc0039033.1_g000001

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039033.1
OG0000331
Physical Location & Seq
Reverse (-)
1 .. 695
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039033.1_g000001.1.cds

Sequence Viewer

Length: 338 bp
atggccaaatccacctaccaaacctaccggcgccgaactcgaagctaccggaactggctggagctcccggacgacgtcaccgcttccattctctcccgcctcggcgccatcgaaatcctgacgcgagctcagaaggtctgcatgccgtggcgcaaaatctgcaaggaccgtttgatgtggcgcaccatcgacatgagaaacgacggctttctccgcgattacgacttcgacttggacaagctgtgccgccacggcgttgatcggagctccggttgtcttgtcgatatcaatgtcgaacacttcggcaccgatgagctactcaagtatatcactaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

112

Amino Acids

13.35

Weight (kDa)

9.0

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 3 cut(s) 30, 104, 305
AccII CGCG 2 cut(s) 124, 216
AciI CCGC 4 cut(s) 81, 97, 214, 247
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 3 cut(s) 31, 75, 105
AluBI AGCT 6 cut(s) 45, 64, 128, 241, 267, 316
AluI AGCT 6 cut(s) 45, 64, 128, 241, 267, 316
Alw21I GWGCWC 3 cut(s) 66, 130, 269
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 4 cut(s) 33, 107, 153, 183
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 30, 104, 305
BanII GRGCYC 3 cut(s) 66, 130, 269
Bbv12I GWGCWC 3 cut(s) 66, 130, 269
BccI CCATC 2 cut(s) 116, 194
BceAI ACGGC 3 cut(s) 130, 220, 268
BcnI CCSGG 1 cut(s) 68
BfoI RGCGCY 2 cut(s) 34, 108
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 3 cut(s) 32, 106, 307
BmrFI CCNGG 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 68
BsaHI GRCGYC 3 cut(s) 31, 75, 105
BsaJI CCNNGG 3 cut(s) 100, 146, 250
BsaWI WCCGGW 2 cut(s) 48, 269
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 100, 146, 250
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 124, 216
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 3 cut(s) 30, 104, 305
BsiHKAI GWGCWC 3 cut(s) 66, 130, 269
BsiSI CCGG 4 cut(s) 28, 49, 68, 270
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 66, 130, 269
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 4 cut(s) 81, 97, 214, 247
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 2 cut(s) 124, 216
BspLI GGNNCC 3 cut(s) 32, 106, 307
BspT107I GGYRCC 3 cut(s) 30, 104, 305
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 3 cut(s) 100, 146, 250
BssMI GATC 1 cut(s) 259
BssNI GRCGYC 3 cut(s) 31, 75, 105
Bst4CI ACNGT 1 cut(s) 170
BstACI GRCGYC 3 cut(s) 31, 75, 105
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 126, 143
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 146, 250
BstFNI CGCG 2 cut(s) 124, 216
BstH2I RGCGCY 2 cut(s) 34, 108
BstHHI GCGC 4 cut(s) 33, 107, 153, 183
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 159, 213, 252
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 2 cut(s) 124, 216
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 146, 250
Cac8I GCNNGC 2 cut(s) 126, 143
CfoI GCGC 4 cut(s) 33, 107, 153, 183
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 166
CseI GACGC 1 cut(s) 130
CviAII CATG 2 cut(s) 142, 193
CviJI RGCY 9 cut(s) 5, 45, 58, 64, 128, 207, 241, 267, 316
CviKI_1 RGCY 9 cut(s) 5, 45, 58, 64, 128, 207, 241, 267, 316
DdeI CTNAG 1 cut(s) 129
DinI GGCGCC 2 cut(s) 32, 106
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 3 cut(s) 64, 128, 267
Eco24I GRGCYC 3 cut(s) 66, 130, 269
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 3 cut(s) 64, 128, 267
EcoICRI GAGCTC 3 cut(s) 64, 128, 267
EcoRV GATATC 1 cut(s) 286
EcoT38I GRGCYC 3 cut(s) 66, 130, 269
EgeI GGCGCC 2 cut(s) 32, 106
EheI GGCGCC 2 cut(s) 32, 106
FaeI CATG 2 cut(s) 145, 196
FaiI YATR 3 cut(s) 143, 194, 327
FatI CATG 2 cut(s) 141, 192
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 247
FriOI GRGCYC 3 cut(s) 66, 130, 269
Fsp4HI GCNGC 1 cut(s) 247
GlaI GCGC 4 cut(s) 32, 106, 152, 182
GluI GCNGC 1 cut(s) 247
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 2 cut(s) 34, 108
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 28, 49, 68, 270
HgaI GACGC 1 cut(s) 130
HhaI GCGC 4 cut(s) 33, 107, 153, 183
Hin1I GRCGYC 3 cut(s) 31, 75, 105
Hin1II CATG 2 cut(s) 145, 196
Hin6I GCGC 4 cut(s) 31, 105, 151, 181
HinP1I GCGC 4 cut(s) 31, 105, 151, 181
HpaII CCGG 4 cut(s) 28, 49, 68, 270
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 132, 264
Hpy188III TCNNGA 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 77, 206
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 141, 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 213, 252
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 3 cut(s) 31, 75, 105
Hsp92II CATG 2 cut(s) 145, 196
HspAI GCGC 4 cut(s) 31, 105, 151, 181
KasI GGCGCC 2 cut(s) 30, 104
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 4 cut(s) 61, 69, 264, 272
LpnPI CCDG 7 cut(s) 40, 41, 44, 62, 81, 131, 283
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MhlI GDGCHC 3 cut(s) 66, 130, 269
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 2 cut(s) 31, 105
MnlI CCTC 1 cut(s) 110
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 28, 49, 68, 270
MspR9I CCNGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 124, 216
MwoI GCNNNNNNNGC 3 cut(s) 159, 213, 252
NarI GGCGCC 2 cut(s) 31, 105
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 145, 196
NlaIV GGNNCC 3 cut(s) 32, 106, 307
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 1 cut(s) 248
PluTI GGCGCC 2 cut(s) 34, 108
Psp124BI GAGCTC 3 cut(s) 66, 130, 269
PspN4I GGNNCC 3 cut(s) 32, 106, 307
PspPI GGNCC 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 3 cut(s) 66, 130, 269
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 3 cut(s) 66, 130, 269
SfoI GGCGCC 2 cut(s) 32, 106
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 145
SsiI CCGC 4 cut(s) 81, 97, 214, 247
SspDI GGCGCC 2 cut(s) 30, 104
SstI GAGCTC 3 cut(s) 66, 130, 269
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 78
TaqI TCGA 6 cut(s) 40, 111, 189, 228, 282, 294
TauI GCSGC 1 cut(s) 249
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 166
XceI RCATGY 1 cut(s) 145
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.