Rmu_sc0000658.1_g000012

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000658.1
OG0000331
Physical Location & Seq
Reverse (-)
43773 .. 44249
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000658.1_g000012.1.cds

Sequence Viewer

Length: 477 bp
atggccgaatccggccgatgccgaaagcgaaactggacggaactccctgacgagttaacggcggcgattctttcacggctgggagtgatggagatcctagagagcgctcagaaagtttgcatgaagtggcgtaaaatctccaaggaccctctcttctggcgcaaaatcgacatgcgcaacgatggtgatcttgatgactgggactatgtgtccatgttccgccacgtcgttgatcggagctccggtaatgtcgtcgatatcaatatcgagcacttcggcaccgacaaactactcacctttatcaccgaaaggtacttcattcttttcctatcaaacaccagggctttagaaattagaaatatttttcgctcaatttcggagtattattatcctgtggtgtttgtttgttatgtgatggttaaactggttataaggcttgtattactgtggagtaatcatagctctgtatttgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

158

Amino Acids

18.77

Weight (kDa)

7.72

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000331)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03625 AT4G03630 AT4G05460 AT4G05470 AT4G05475 AT4G05490 AT4G05497
fragaria_vesca FvH4_1g14800 FvH4_2g13770 FvH4_2g19530 FvH4_3g09530 FvH4_3g09530 FvH4_3g09552 FvH4_3g09562 FvH4_3g09640 FvH4_6g48070 FvH4_7g32622 FvH4_7g32650 FvH4_7g32650
malus_domestica MD01G1164600.v1.1 MD05G1060300.v1.1 MD05G1276900.v1.1 MD05G1277000.v1.1 MD13G1280000.v1.1
prunus_persica Prupe.4G087700_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087800_v2.0.a1 Prupe.4G087900_v2.0.a1
pyrus_communis pycom05g25780 pycom05g25800
rosa_chinensis RchiOBHm_Chr2g0103761 RchiOBHm_Chr2g0167391 RchiOBHm_Chr5g0015131 RchiOBHm_Chr5g0015151 RchiOBHm_Chr5g0015251 RchiOBHm_Chr5g0015321
rosa_laevigata RLG00000010446 RLG00000017256 RLG00000021713 RLG00000021727 RLG00000032174 RLG00000032175 RLG00000032181 RLG00000032186 RLG00000032190 RLG00000032192
rosa_multiflora Rmu_co8228227.1_g000001 Rmu_co8274851.1_g000001 Rmu_co8371751.1_g000001 Rmu_co8379153.1_g000001 Rmu_co8502117.1_g000002 Rmu_sc0000658.1_g000005 Rmu_sc0000658.1_g000012 Rmu_sc0001840.1_g000005 Rmu_sc0001845.1_g000001 Rmu_sc0002209.1_g000007 Rmu_sc0002209.1_g000013 Rmu_sc0002209.1_g000025 Rmu_sc0024563.1_g000001 Rmu_sc0039033.1_g000001
rosa_roxburghii Rroxscaffold_1G00061130 Rroxscaffold_1G00061210 Rroxscaffold_1G00061260 Rroxscaffold_1G00061390 Rroxscaffold_1G00061400 Rroxscaffold_2G00083550 Rroxscaffold_2G00139420
rosa_rugosa Rorug02G0117000 Rorug02G0530100 Rorug05G0024500 Rorug05G0024500 Rorug05G0025100 Rorug05G0025200 Rorug05G0026000 Rorug05G0026700 Rorug06G0384500
rosa_samantha Rh2AG165900 Rh2AG596900 Rh2AG597000 Rh2BG173200 Rh2BG608400 Rh2CG171900 Rh2CG579200 Rh2DG171400 Rh2DG306300 Rh5AG118900 Rh5AG119200 Rh5AG119300 Rh5AG119600 Rh5AG120000 Rh5AG120100 Rh5BG117000 Rh5BG117100 Rh5BG117200 Rh5BG117600 Rh5BG117700 Rh5BG118200 Rh5BG119000 Rh5CG127900 Rh5CG128000 Rh5CG128700 Rh5CG129500 Rh5DG115800 Rh5DG116000 Rh5DG117000 Rh5DG117400 Rh5DG117900 Rh6BG508700 Rh6BG508800
rosa_wichuraiana Rw2G013010 Rw5G010280 Rw5G010370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
Acc16I TGCGCA 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 2 cut(s) 62, 220
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 2 cut(s) 3, 13
AfaI GTAC 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 106
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 2 cut(s) 240, 462
AluI AGCT 2 cut(s) 240, 462
Alw21I GWGCWC 2 cut(s) 242, 273
AlwI GGATC 1 cut(s) 88
Aor51HI AGCGCT 1 cut(s) 106
AoxI GGCC 2 cut(s) 3, 13
AspLEI GCGC 3 cut(s) 107, 162, 177
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 197, 286, 295
AvaII GGWCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 242, 273
BccI CCATC 3 cut(s) 82, 176, 409
BceAI ACGGC 2 cut(s) 75, 92
BciT130I CCWGG 1 cut(s) 340
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 147, 280
BmrFI CCNGG 1 cut(s) 340
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 208
BsaBI GATNNNNATC 2 cut(s) 92, 186
BsaJI CCNNGG 2 cut(s) 141, 339
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bse1I ACTGG 3 cut(s) 38, 203, 429
Bse8I GATNNNNATC 2 cut(s) 92, 186
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 2 cut(s) 141, 339
BseJI GATNNNNATC 2 cut(s) 92, 186
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 3 cut(s) 38, 203, 429
BseX3I CGGCCG 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 5, 15
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 2 cut(s) 242, 273
BsiSI CCGG 2 cut(s) 12, 243
BslFI GGGAC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 5, 15
Bsp1286I GDGCHC 2 cut(s) 242, 273
Bsp143I GATC 3 cut(s) 93, 187, 232
BspACI CCGC 2 cut(s) 62, 220
BspANI GGCC 2 cut(s) 5, 15
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 147, 280
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 278
BsrI ACTGG 3 cut(s) 38, 203, 429
BssECI CCNNGG 2 cut(s) 141, 339
BssMI GATC 3 cut(s) 93, 187, 232
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 3 cut(s) 107, 162, 177
BstKTI GATC 3 cut(s) 96, 190, 235
BstMBI GATC 3 cut(s) 93, 187, 232
BstMCI CGRYCG 1 cut(s) 16
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BstZI CGGCCG 1 cut(s) 13
BsuRI GGCC 2 cut(s) 5, 15
BtrI CACGTC 1 cut(s) 226
CfoI GCGC 3 cut(s) 107, 162, 177
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 121, 172, 214
CviJI RGCY 7 cut(s) 5, 15, 79, 240, 344, 436, 462
CviKI_1 RGCY 7 cut(s) 5, 15, 79, 240, 344, 436, 462
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 95, 189, 234
DpnII GATC 3 cut(s) 93, 187, 232
DriI GACNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 2 cut(s) 3, 13
EagI CGGCCG 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 106
Eco52I CGGCCG 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 338
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 124, 175, 217
FaiI YATR 7 cut(s) 122, 173, 207, 215, 411, 431, 459
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 120, 171, 213
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 98
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 3 cut(s) 106, 161, 176
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 5, 15
HapII CCGG 2 cut(s) 12, 243
HhaI GCGC 3 cut(s) 107, 162, 177
Hin1II CATG 3 cut(s) 124, 175, 217
Hin6I GCGC 3 cut(s) 105, 160, 175
HinP1I GCGC 3 cut(s) 105, 160, 175
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 8, 67
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 2 cut(s) 12, 243
HphI GGTGA 3 cut(s) 197, 286, 295
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 111, 237, 379
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 230, 257
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 124, 175, 217
HspAI GCGC 3 cut(s) 105, 160, 175
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 93, 187, 232
LmnI GCTCC 2 cut(s) 237, 245
LweI GCATC 1 cut(s) 8
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 225
MalI GATC 3 cut(s) 95, 189, 234
MboI GATC 3 cut(s) 93, 187, 232
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 242, 273
MluCI AATT 2 cut(s) 351, 372
MnlI CCTC 1 cut(s) 159
MseI TTAA 2 cut(s) 56, 420
MspI CCGG 2 cut(s) 12, 243
MspR9I CCNGG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 340
NdeII GATC 3 cut(s) 93, 187, 232
NlaIII CATG 3 cut(s) 124, 175, 217
NlaIV GGNNCC 2 cut(s) 147, 280
NsbI TGCGCA 1 cut(s) 176
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 2 cut(s) 8, 67
PkrI GCNGC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 145
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 147, 280
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 56, 420
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 93, 187, 232
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 2 cut(s) 242, 273
SetI ASST 5 cut(s) 228, 242, 299, 314, 464
SfaNI GCATC 1 cut(s) 8
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 351, 372
SsiI CCGC 2 cut(s) 62, 220
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 447
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 168, 255, 267
TasI AATT 2 cut(s) 351, 372
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 8, 67
Tru1I TTAA 2 cut(s) 56, 420
Tru9I TTAA 2 cut(s) 56, 420
TspDTI ATGAA 2 cut(s) 137, 307
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 145
XceI RCATGY 1 cut(s) 175
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.